Opened 10 years ago

Closed 10 years ago

Last modified 10 years ago

#178 closed defect (fixed)

Error selecting an atom with the mouse

Reported by: Tom Goddard Owned by: pett
Priority: major Milestone:
Component: Core Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: chimera

Description

Traceback (most recent call last):
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 34, in <lambda>
lambda e: self.dispatch_mouse_event(e, "left", "mouse_up"))
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 75, in dispatch_mouse_event
f(MouseEvent(event))
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 228, in mouse_up
mouse_select(event, self.session, self.view)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 197, in mouse_select
pick = view.first_intercept(x,y)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py", line 726, in first_intercept
p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box')
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 815, in first_intercept
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 831, in first_intercept_children
p = d.first_intercept(cxyz1, cxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 724, in first_intercept
pa = self._atom_first_intercept(xyz1, xyz2)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 763, in _atom_first_intercept
atom = self.atoms[anum]
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py", line 109, in getitem
return object_map(self._pointers[i], self._object_class)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py", line 698, in object_map
_object_map[p] = o = object_type(p)
File "<string>", line 1, in init
NameError: name 'set_c_pointer' is not defined
Traceback (most recent call last):
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py", line 2908, in <lambda>
lambda event: event.callable(*event.args, event.kw) )
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py", line 63, in <lambda>
or s.mouse_modes.mouse_pause_tracking())
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 115, in mouse_pause_tracking
self.mouse_pause()
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 129, in mouse_pause
m.pause(self.mouse_pause_position)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 337, in pause
p = self.view.first_intercept(x,y)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py", line 726, in first_intercept
p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box')
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 815, in first_intercept
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 831, in first_intercept_children
p = d.first_intercept(cxyz1, cxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 724, in first_intercept
pa = self._atom_first_intercept(xyz1, xyz2)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 763, in _atom_first_intercept
atom = self.atoms[anum]
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py", line 109, in getitem
return object_map(self._pointers[i], self._object_class)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py", line 698, in object_map
_object_map[p] = o = object_type(p)
File "<string>", line 1, in init
NameError: name 'set_c_pointer' is not defined
Traceback (most recent call last):
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py", line 2908, in <lambda>
lambda event: event.callable(*event.args, event.kw) )
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py", line 63, in <lambda>
or s.mouse_modes.mouse_pause_tracking())
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 115, in mouse_pause_tracking
self.mouse_pause()
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 129, in mouse_pause
m.pause(self.mouse_pause_position)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 337, in pause
p = self.view.first_intercept(x,y)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py", line 726, in first_intercept
p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box')
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 815, in first_intercept
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 831, in first_intercept_children
p = d.first_intercept(cxyz1, cxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 724, in first_intercept
pa = self._atom_first_intercept(xyz1, xyz2)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 763, in _atom_first_intercept
atom = self.atoms[anum]
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py", line 109, in getitem
return object_map(self._pointers[i], self._object_class)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py", line 698, in object_map
_object_map[p] = o = object_type(p)
File "<string>", line 1, in init
NameError: name 'set_c_pointer' is not defined
Traceback (most recent call last):
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py", line 2908, in <lambda>
lambda event: event.callable(*event.args, event.kw) )
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py", line 63, in <lambda>
or s.mouse_modes.mouse_pause_tracking())
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 115, in mouse_pause_tracking
self.mouse_pause()
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 129, in mouse_pause
m.pause(self.mouse_pause_position)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 337, in pause
p = self.view.first_intercept(x,y)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py", line 726, in first_intercept
p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box')
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 815, in first_intercept
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 831, in first_intercept_children
p = d.first_intercept(cxyz1, cxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 724, in first_intercept
pa = self._atom_first_intercept(xyz1, xyz2)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 763, in _atom_first_intercept
atom = self.atoms[anum]
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py", line 109, in getitem
return object_map(self._pointers[i], self._object_class)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py", line 698, in object_map
_object_map[p] = o = object_type(p)
File "<string>", line 1, in init
NameError: name 'set_c_pointer' is not defined
Traceback (most recent call last):
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py", line 2908, in <lambda>
lambda event: event.callable(*event.args, event.kw) )
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py", line 63, in <lambda>
or s.mouse_modes.mouse_pause_tracking())
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 115, in mouse_pause_tracking
self.mouse_pause()
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 129, in mouse_pause
m.pause(self.mouse_pause_position)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 337, in pause
p = self.view.first_intercept(x,y)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py", line 726, in first_intercept
p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box')
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 815, in first_intercept
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 831, in first_intercept_children
p = d.first_intercept(cxyz1, cxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 724, in first_intercept
pa = self._atom_first_intercept(xyz1, xyz2)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 763, in _atom_first_intercept
atom = self.atoms[anum]
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py", line 109, in getitem
return object_map(self._pointers[i], self._object_class)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py", line 698, in object_map
_object_map[p] = o = object_type(p)
File "<string>", line 1, in init
NameError: name 'set_c_pointer' is not defined
Traceback (most recent call last):
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py", line 2908, in <lambda>
lambda event: event.callable(*event.args, event.kw) )
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py", line 63, in <lambda>
or s.mouse_modes.mouse_pause_tracking())
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 115, in mouse_pause_tracking
self.mouse_pause()
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 129, in mouse_pause
m.pause(self.mouse_pause_position)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 337, in pause
p = self.view.first_intercept(x,y)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py", line 726, in first_intercept
p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box')
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 815, in first_intercept
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 831, in first_intercept_children
p = d.first_intercept(cxyz1, cxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 724, in first_intercept
pa = self._atom_first_intercept(xyz1, xyz2)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 763, in _atom_first_intercept
atom = self.atoms[anum]
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py", line 109, in getitem
return object_map(self._pointers[i], self._object_class)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py", line 698, in object_map
_object_map[p] = o = object_type(p)
File "<string>", line 1, in init
NameError: name 'set_c_pointer' is not defined
Traceback (most recent call last):
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py", line 2908, in <lambda>
lambda event: event.callable(*event.args, event.kw) )
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py", line 63, in <lambda>
or s.mouse_modes.mouse_pause_tracking())
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 115, in mouse_pause_tracking
self.mouse_pause()
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 129, in mouse_pause
m.pause(self.mouse_pause_position)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 337, in pause
p = self.view.first_intercept(x,y)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py", line 726, in first_intercept
p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box')
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 815, in first_intercept
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 831, in first_intercept_children
p = d.first_intercept(cxyz1, cxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 724, in first_intercept
pa = self._atom_first_intercept(xyz1, xyz2)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 763, in _atom_first_intercept
atom = self.atoms[anum]
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py", line 109, in getitem
return object_map(self._pointers[i], self._object_class)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py", line 698, in object_map
_object_map[p] = o = object_type(p)
File "<string>", line 1, in init
NameError: name 'set_c_pointer' is not defined
Traceback (most recent call last):
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py", line 2908, in <lambda>
lambda event: event.callable(*event.args, event.kw) )
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py", line 63, in <lambda>
or s.mouse_modes.mouse_pause_tracking())
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 115, in mouse_pause_tracking
self.mouse_pause()
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 129, in mouse_pause
m.pause(self.mouse_pause_position)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 337, in pause
p = self.view.first_intercept(x,y)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py", line 726, in first_intercept
p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box')
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 815, in first_intercept
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 831, in first_intercept_children
p = d.first_intercept(cxyz1, cxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 724, in first_intercept
pa = self._atom_first_intercept(xyz1, xyz2)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 763, in _atom_first_intercept
atom = self.atoms[anum]
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py", line 109, in getitem
return object_map(self._pointers[i], self._object_class)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py", line 698, in object_map
_object_map[p] = o = object_type(p)
File "<string>", line 1, in init
NameError: name 'set_c_pointer' is not defined
Traceback (most recent call last):
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py", line 2908, in <lambda>
lambda event: event.callable(*event.args, event.kw) )
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py", line 63, in <lambda>
or s.mouse_modes.mouse_pause_tracking())
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 115, in mouse_pause_tracking
self.mouse_pause()
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 129, in mouse_pause
m.pause(self.mouse_pause_position)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py", line 337, in pause
p = self.view.first_intercept(x,y)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py", line 726, in first_intercept
p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box')
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 815, in first_intercept
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py", line 831, in first_intercept_children
p = d.first_intercept(cxyz1, cxyz2, exclude)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 724, in first_intercept
pa = self._atom_first_intercept(xyz1, xyz2)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py", line 763, in _atom_first_intercept
atom = self.atoms[anum]
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py", line 109, in getitem
return object_map(self._pointers[i], self._object_class)
File "/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py", line 698, in object_map
_object_map[p] = o = object_type(p)
File "<string>", line 1, in init
NameError: name 'set_c_pointer' is not defined

Change History (2)

comment:1 by pett, 10 years ago

Resolution: → fixed
Status: new → closed

comment:2 by pett, 10 years ago

Component: Molecular Data → Core
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