![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 10 years ago
Closed 9 years ago
#184 closed defect (worksforme)
seg vault deleting atoms
| Reported by: | Greg Couch | Owned by: | Eric Pettersen |
|---|---|---|---|
| Priority: | blocker | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | Tom Goddard, Greg Couch | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | chimera |
Description
Starting ChimeraX and executing the test program gives a segmentation fault:
gregc@whimsey:~/src/chimerax$ ChimeraX.app/bin/ChimeraX Vector smash protection is enabled. Fatal Python error: Segmentation fault Thread 0x00007f5971850700 (most recent call first): File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/threading.py", line 297 in wait File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/threading.py", line 556 in wait File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/threading.py", line 1187 in run File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/threading.py", line 923 in _bootstrap_inner File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/threading.py", line 891 in _bootstrap Current thread 0x00007f5a1c1bd700 (most recent call first): File "<string>", line 5 in delete File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/core/commands/delete.py", line 12 in delete File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/core/commands/cli.py", line 1714 in execute File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/core/commands/run.py", line 22 in run File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/test/test.py", line 102 in run_commands File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/core/commands/cli.py", line 1714 in execute File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/cmd_line/gui.py", line 121 in on_enter File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/wx/core.py", line 1893 in MainLoop File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/core/ui/gui.py", line 98 in event_loop File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/ChimeraX_main.py", line 414 in init File "__main__.py", line 3 in <module> Segmentation fault (core dumped)
Change History (3)
comment:1 by , 10 years ago
comment:3 by , 9 years ago
| Resolution: | → worksforme |
|---|---|
| Status: | new → closed |
Lost test program :-( But haven't had any problems recently.
Note:
See TracTickets
for help on using tickets.
Fixed. Was trying to access one of the bond's atoms in ~Bond to mark structure categories as dirty, and that atom was already dead. Moved that code to AtomicStructure's delete_bond method.