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Timeline
Dec 1, 2017:
- 10:07 AM Ticket #943 (RFE: show defaults in command usage) created by
- Seems like it would be useful if the "usage" information in the Log …
- 8:06 AM Ticket #942 (No balloons on assemblies) created by
- If I open a structure (e.g. 1r94) I get label balloons when I hover …
Nov 30, 2017:
- 6:21 PM Ticket #941 (would like glycan residue classification) created by
- Would like alternative to/replacement for Residue::polymer_type() that …
- 3:14 PM Ticket #940 (Use newer OpenSSL on Mac OS X) created by
- On High Sierra, Apple's library that we use for OpenSSL with Python no …
- 2:57 PM 2017-11-30 created by
- 2:02 PM DeveloperMeetings edited by
- (diff)
- 1:54 PM Ticket #884 (need more tether positions on ribbon) closed by
- fixed: The backbone positions can only be calculated as part of rebuilding …
- 1:49 PM Ticket #939 (Need command to report various file locations) created by
- There should be a command that reports the folder location for various …
- 1:32 PM Ticket #938 (nucleotides ballons don't obey preferences for residue id) created by
- ChimeraX dynamically changes how the residue name appears based on the …
- 4:04 AM Ticket #937 (Allow color command to color by atom properties) created by
- Something I've been missing having available in ChimeraX... I've made …
Nov 29, 2017:
- 12:48 PM Ticket #936 (BiggerErrorDialog generates warning output in log on Windows) closed by
- fixed: Fixed in PyQt 5.9.2 with Qt 5.9.3
- 12:48 PM Ticket #936 (BiggerErrorDialog generates warning output in log on Windows) created by
- When an code exception occurs on Windows, the following warning is …
- 12:29 PM Ticket #933 (Would like shift with non-uniform scaling for instances) closed by
- not a bug: Good point. Request withdrawn.
- 12:27 PM Ticket #934 (bug) closed by
- not a bug: Hi Carrie, As per the limitations listed on the ChimeraX download …
- 9:42 AM Ticket #935 (Can't pick global pseudobond after moving model) closed by
- fixed: Fixed. Global pseudobond picking was only working correctly if models …
- 9:41 AM Ticket #935 (Can't pick global pseudobond after moving model) created by
- Ctrl-click on a distance monitor pseudobond (global pseudobond) after …
- 9:12 AM Ticket #934 (bug) created by
- […]
Nov 28, 2017:
- 8:32 PM Ticket #933 (Would like shift with non-uniform scaling for instances) created by
- Would like non-uniform scaling support with a shift (analogous to the …
- 5:40 PM Ticket #801 (Unpredictable keyword completion) closed by
- fixed: Fixed. Needed sort possible completions by number of words. Note …
- 11:04 AM Ticket #932 (AddH crashes when PDB file does not contain SEQRES records) closed by
- fixed: Thanks for pointing out these problems. Since chain.from_seqres is …
- 9:05 AM Ticket #801 (Unpredictable keyword completion) reopened by
- In current daily build (2017-11-28) "col" is interpreted as …
- 2:51 AM Ticket #932 (AddH crashes when PDB file does not contain SEQRES records) created by
- A couple of object/property names not changed in the move from …
Nov 27, 2017:
- 5:56 PM Ticket #542 (Test ticket) closed by
- fixed
- 5:56 PM Ticket #542 (Test ticket) reopened by
- 5:25 PM Ticket #931 (atom balloons show on top of help widget) closed by
- fixed
- 5:25 PM Ticket #931 (atom balloons show on top of help widget) reopened by
- 5:25 PM Ticket #931 (atom balloons show on top of help widget) closed by
- fixed
- 4:58 PM Ticket #931 (atom balloons show on top of help widget) created by
- Repeat by opening a structure and positioning the user's guide in a …
- 3:23 PM Ticket #930 (IHM crosslink models under the restraint group model are surprisingly ...) created by
- Using "crosslinks histogram" with restraints model number gave "no …
- 1:16 PM Ticket #929 (Need X3D output for 2d and 3d labels) created by
- 2d labels should be on top of the 3d scene (like a HUD).
- 1:15 PM Ticket #928 (Would like labels at arbitrary 3D coordinates) created by
- This would be useful in many cases: for arbitrary locations within a …
Nov 22, 2017:
- 3:28 PM Ticket #576 (Use SSBOND records) closed by
- fixed: The SSBONDs were being processed immediately, before any ATOM records. …
Nov 21, 2017:
- 5:32 PM Ticket #927 (label model color not used) closed by
- fixed: Fixed. If a new label is added after changing the parent model label, …
- 5:28 PM Ticket #926 (label repositioning erratic) closed by
- fixed: Fixed.
- 3:55 PM ChangeLog edited by
- (diff)
- 3:54 PM ChangeLog edited by
- (diff)
- 3:21 PM Ticket #927 (label model color not used) created by
- In the model panel, the label model color isn't initialized to …
- 3:18 PM Ticket #926 (label repositioning erratic) created by
- During the playback of a coordset, atom label positions don't move to …
- 12:47 PM ChangeLog edited by
- (diff)
- 9:48 AM Ticket #925 (Severe degradation in threaded performance on Linux) created by
- This seems to have happened at least a few months ago, but I've only …
- 2:38 AM Ticket #924 (Clipper plugin not pulling dependency from PyPI) created by
- Linux builds of the core of Clipper-Python are now on PyPI (at …
Nov 20, 2017:
- 4:18 PM Ticket #921 (Memory leak in core.commands.cofr.PivotIndicator) closed by
- fixed: Fixed.
- 9:42 AM Ticket #923 (ViewDockX bundle) created by
- Migrate ViewDockX prototype into main ChimeraX source tree
- 9:41 AM Ticket #922 (Revise tutorials for new data format and bundle APIs) created by
- Need to document APIs referenced in tutorials and annotate methods as …
- 6:02 AM Ticket #921 (Memory leak in core.commands.cofr.PivotIndicator) created by
- ... leading to one of the more initially head-scratching stack traces …
Nov 16, 2017:
- 2:35 PM Ticket #531 (Sequences and alignments) closed by
- fixed: Implemented
Nov 15, 2017:
- 4:57 PM Ticket #920 (coloring volume surf gives TypeError unsupported operand type(s) for ...) closed by
- fixed: Fixed. I fixed this yesterday but forgot to git push the changes. …
- 4:43 PM Ticket #831 (Allow methods to access current changes to a specific Structure) closed by
- fixed: Per-structure change triggers are now implemented.
- 4:29 PM ChangeLog edited by
- (diff)
- 4:28 PM ChangeLog edited by
- (diff)
- 4:27 PM ChangeLog edited by
- (diff)
- 4:26 PM ChangeLog edited by
- (diff)
- 3:48 PM Ticket #920 (coloring volume surf gives TypeError unsupported operand type(s) for ...) created by
- Coloring an isosurfaces gives error: color #2 purple Traceback (most …
Nov 14, 2017:
- 4:53 PM Ticket #916 (RFE updating molecular surface color) closed by
- fixed: Fixed. Made molecular surfaces remember per-atom coloring. I moved a …
- 4:34 AM Ticket #919 (RFE: allow reassignment of chain for residues) created by
- Not particularly urgent, but it would certainly be useful to have this …
Nov 13, 2017:
- 5:48 PM Ticket #915 ("rename" error changing model number in some cases) closed by
- fixed: Fixed. Needed to always rebuild model panel if model IDs change, and …
- 4:01 PM Ticket #918 (Would like X3D output with only triangles) created by
- The problem is that some VRML importers only understand triangles, eg. …
- 2:55 PM Ticket #917 (RFE Log context menu allows switching between help links and execution ...) created by
- Would be convenient for making demos/tutorials to allow saving the Log …
- 2:28 PM Ticket #916 (RFE updating molecular surface color) created by
- As mentioned in (closed) ticket #383: "When a molecular surface …
- 2:14 PM Ticket #915 ("rename" error changing model number in some cases) created by
- Reclassify as desired. If I have two models open, #1 and #2, entering …
- 1:00 PM Ticket #914 (Write mmCIF file) created by
- 1. Write tables that ChimeraX reads (except for tables like "this …
Nov 9, 2017:
- 5:57 PM Ticket #913 (help command with absolute path to html does not work) created by
- help help:/Users/goddard/Desktop/test.html No help found for …
- 5:09 PM Ticket #912 (Saving image, Linux: "Inappropriate ioctl for device") closed by
- fixed: Reproduced. The bug is that Python's os.getlogin() fails on Ubuntu …
- 10:52 AM ChangeLog edited by
- (diff)
- 10:32 AM Ticket #912 (Saving image, Linux: "Inappropriate ioctl for device") created by
- From: "Xie, Dan" Subject: Re: Questions on 4D visualization using …
- 12:00 AM Milestone Alpha 4 completed
- Preferences (session vs global) Undo manager (API for registering undo …
Nov 8, 2017:
- 12:56 PM Ticket #911 ("struts delete" AttributeError: 'PseudobondGroup' object has no ...) closed by
- fixed: Fixed. Wrong code used to delete pseudobonds, only happened when a …
- 12:24 PM Ticket #911 ("struts delete" AttributeError: 'PseudobondGroup' object has no ...) created by
- open 5ego hide struts @c5',ca Created 47 struts for @c5',ca, max …
Nov 6, 2017:
- 1:53 PM Ticket #888 (element specifier "O" causes problems in "select" cmd, gets mixed up ...) closed by
- fixed: Bring back November 9, 2015 change where the case of what the user …
- 12:27 PM Ticket #910 ("rungs" hiding options seem to have problems) created by
- Not that one would use the "rungs" setting to NOT hide atoms often, …
- 12:09 PM Ticket #909 (Closing a labeled pseudobond model causes an error) closed by
- fixed: Fixed. The ~hbond command deleted the pseudobond group showing the …
- 12:04 PM Ticket #907 (after label-color change, labels update back to old color) closed by
- fixed
- 11:42 AM Ticket #909 (Closing a labeled pseudobond model causes an error) created by
- open 1zik 1gcn hb #1 restrict #2 show t rev t label color yellow move …
Nov 5, 2017:
- 9:33 AM Ticket #908 (Stringdb bug) created by
- […]
- 9:03 AM Ticket #907 (after label-color change, labels update back to old color) created by
- open 1zik 1gcn hb #1 restrict #2 show t rev t label color yellow move …
Nov 3, 2017:
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