Opened 8 years ago

Closed 8 years ago

#920 closed defect (fixed)

coloring volume surf gives TypeError unsupported operand type(s) for +=: 'NoneType' and 'int'

Reported by: Elaine Meng Owned by: Tom Goddard
Priority: major Milestone:
Component: Volume Data Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by Elaine Meng)

Coloring an isosurfaces gives error:

color #2 purple
Traceback (most recent call last):
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/cmd_line/tool.py", line 201, in execute
cmd.run(cmd_text)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 2550, in run
result = ci.function(session, kw_args)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/color.py", line 159, in color
ns += len(mlist)
TypeError: unsupported operand type(s) for +=: 'NoneType' and 'int'

Attachments (1)

amino-coloring.cxc (446 bytes ) - added by Elaine Meng 8 years ago.

Download all attachments as: .zip

Change History (4)

comment:1 by Elaine Meng, 8 years ago

Description: modified (diff)
Summary: recoloring surf after bumps-coloring gives TypeError unsupported operand type(s) for +=: 'NoneType' and 'int'coloring volume surf gives TypeError unsupported operand type(s) for +=: 'NoneType' and 'int'

At first I blamed previous bump-coloring but now I see that simply opening a volume and then changing its color causes the error. Coloring molecular surface does not have this problem.

by Elaine Meng, 8 years ago

Attachment: amino-coloring.cxc added

comment:2 by Elaine Meng, 8 years ago

Actually coloring molscular surface can have this problem. Haven't figured out the prerequisites but opening the attached coloring command file seems to do it reliably.

comment:3 by Tom Goddard, 8 years ago

Resolution: fixed
Status: assignedclosed

Fixed.

I fixed this yesterday but forgot to git push the changes. The bug was introduced when I changed molecular surfaces to remember atom colors 2 days ago.

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