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Timeline
Nov 22, 2017:
- 3:28 PM Ticket #576 (Use SSBOND records) closed by
- fixed: The SSBONDs were being processed immediately, before any ATOM records. …
Nov 21, 2017:
- 5:32 PM Ticket #927 (label model color not used) closed by
- fixed: Fixed. If a new label is added after changing the parent model label, …
- 5:28 PM Ticket #926 (label repositioning erratic) closed by
- fixed: Fixed.
- 3:55 PM ChangeLog edited by
- (diff)
- 3:54 PM ChangeLog edited by
- (diff)
- 3:21 PM Ticket #927 (label model color not used) created by
- In the model panel, the label model color isn't initialized to …
- 3:18 PM Ticket #926 (label repositioning erratic) created by
- During the playback of a coordset, atom label positions don't move to …
- 12:47 PM ChangeLog edited by
- (diff)
- 9:48 AM Ticket #925 (Severe degradation in threaded performance on Linux) created by
- This seems to have happened at least a few months ago, but I've only …
- 2:38 AM Ticket #924 (Clipper plugin not pulling dependency from PyPI) created by
- Linux builds of the core of Clipper-Python are now on PyPI (at …
Nov 20, 2017:
- 4:18 PM Ticket #921 (Memory leak in core.commands.cofr.PivotIndicator) closed by
- fixed: Fixed.
- 9:42 AM Ticket #923 (ViewDockX bundle) created by
- Migrate ViewDockX prototype into main ChimeraX source tree
- 9:41 AM Ticket #922 (Revise tutorials for new data format and bundle APIs) created by
- Need to document APIs referenced in tutorials and annotate methods as …
- 6:02 AM Ticket #921 (Memory leak in core.commands.cofr.PivotIndicator) created by
- ... leading to one of the more initially head-scratching stack traces …
Nov 16, 2017:
- 2:35 PM Ticket #531 (Sequences and alignments) closed by
- fixed: Implemented
Nov 15, 2017:
- 4:57 PM Ticket #920 (coloring volume surf gives TypeError unsupported operand type(s) for ...) closed by
- fixed: Fixed. I fixed this yesterday but forgot to git push the changes. …
- 4:43 PM Ticket #831 (Allow methods to access current changes to a specific Structure) closed by
- fixed: Per-structure change triggers are now implemented.
- 4:29 PM ChangeLog edited by
- (diff)
- 4:28 PM ChangeLog edited by
- (diff)
- 4:27 PM ChangeLog edited by
- (diff)
- 4:26 PM ChangeLog edited by
- (diff)
- 3:48 PM Ticket #920 (coloring volume surf gives TypeError unsupported operand type(s) for ...) created by
- Coloring an isosurfaces gives error: color #2 purple Traceback (most …
Nov 14, 2017:
- 4:53 PM Ticket #916 (RFE updating molecular surface color) closed by
- fixed: Fixed. Made molecular surfaces remember per-atom coloring. I moved a …
- 4:34 AM Ticket #919 (RFE: allow reassignment of chain for residues) created by
- Not particularly urgent, but it would certainly be useful to have this …
Nov 13, 2017:
- 5:48 PM Ticket #915 ("rename" error changing model number in some cases) closed by
- fixed: Fixed. Needed to always rebuild model panel if model IDs change, and …
- 4:01 PM Ticket #918 (Would like X3D output with only triangles) created by
- The problem is that some VRML importers only understand triangles, eg. …
- 2:55 PM Ticket #917 (RFE Log context menu allows switching between help links and execution ...) created by
- Would be convenient for making demos/tutorials to allow saving the Log …
- 2:28 PM Ticket #916 (RFE updating molecular surface color) created by
- As mentioned in (closed) ticket #383: "When a molecular surface …
- 2:14 PM Ticket #915 ("rename" error changing model number in some cases) created by
- Reclassify as desired. If I have two models open, #1 and #2, entering …
- 1:00 PM Ticket #914 (Write mmCIF file) created by
- 1. Write tables that ChimeraX reads (except for tables like "this …
Nov 9, 2017:
- 5:57 PM Ticket #913 (help command with absolute path to html does not work) created by
- help help:/Users/goddard/Desktop/test.html No help found for …
- 5:09 PM Ticket #912 (Saving image, Linux: "Inappropriate ioctl for device") closed by
- fixed: Reproduced. The bug is that Python's os.getlogin() fails on Ubuntu …
- 10:52 AM ChangeLog edited by
- (diff)
- 10:32 AM Ticket #912 (Saving image, Linux: "Inappropriate ioctl for device") created by
- From: "Xie, Dan" Subject: Re: Questions on 4D visualization using …
- 12:00 AM Milestone Alpha 4 completed
- Preferences (session vs global) Undo manager (API for registering undo …
Nov 8, 2017:
- 12:56 PM Ticket #911 ("struts delete" AttributeError: 'PseudobondGroup' object has no ...) closed by
- fixed: Fixed. Wrong code used to delete pseudobonds, only happened when a …
- 12:24 PM Ticket #911 ("struts delete" AttributeError: 'PseudobondGroup' object has no ...) created by
- open 5ego hide struts @c5',ca Created 47 struts for @c5',ca, max …
Nov 6, 2017:
- 1:53 PM Ticket #888 (element specifier "O" causes problems in "select" cmd, gets mixed up ...) closed by
- fixed: Bring back November 9, 2015 change where the case of what the user …
- 12:27 PM Ticket #910 ("rungs" hiding options seem to have problems) created by
- Not that one would use the "rungs" setting to NOT hide atoms often, …
- 12:09 PM Ticket #909 (Closing a labeled pseudobond model causes an error) closed by
- fixed: Fixed. The ~hbond command deleted the pseudobond group showing the …
- 12:04 PM Ticket #907 (after label-color change, labels update back to old color) closed by
- fixed
- 11:42 AM Ticket #909 (Closing a labeled pseudobond model causes an error) created by
- open 1zik 1gcn hb #1 restrict #2 show t rev t label color yellow move …
Nov 5, 2017:
- 9:33 AM Ticket #908 (Stringdb bug) created by
- […]
- 9:03 AM Ticket #907 (after label-color change, labels update back to old color) created by
- open 1zik 1gcn hb #1 restrict #2 show t rev t label color yellow move …
Nov 3, 2017:
Nov 2, 2017:
- 5:54 PM Ticket #890 (save image/supersample possible bug?) closed by
- can't reproduce: Thanks for running all the tests. Unfortunately the only other …
- 3:50 PM ChangeLog edited by
- (diff)
- 2:40 PM 2017-11-02 created by
- 2:11 PM DeveloperMeetings edited by
- (diff)
Nov 1, 2017:
- 1:40 PM Ticket #769 (Implement findclash) closed by
- fixed: Implemented as "clashes" and "contacts" commands, though "contacts" …
Oct 30, 2017:
- 12:24 PM Ticket #905 (Sequence Viewer Bug on Ubuntu 16.04) closed by
- fixed: Hi Forson, It may be hard to see in all that red text, but part of …
- 11:56 AM Ticket #906 (addh does not use transformed position of model) closed by
- fixed: Optimization of not using scene coords unless necessary wasn't being …
- 11:01 AM Ticket #906 (addh does not use transformed position of model) created by
- open 1zik open 1gcn move y -20 mod #2 addh #2 hb f ... hydrogens …
Oct 28, 2017:
Oct 27, 2017:
- 5:30 PM Ticket #827 (Structure file I/O issues) closed by
- fixed: The new addh code protonates the 2DT residues of 2ajq correctly.
- 4:02 PM Ticket #904 (stitch chain fragments together) created by
- polymeric fragments with the same chain ID should remain separate …
Oct 26, 2017:
- 1:20 PM Ticket #903 (Conflict with system library version) closed by
- fixed: Should be fixed in today's daily build.
- 10:12 AM ChangeLog edited by
- (diff)
- 2:23 AM Ticket #903 (Conflict with system library version) created by
- […]
Oct 25, 2017:
- 1:05 PM Ticket #902 (closing trajectory model with coordset slider shown gives NameError: ...) closed by
- fixed: Fixed.
- 11:20 AM Ticket #902 (closing trajectory model with coordset slider shown gives NameError: ...) created by
- Closing the slider (clicking the "x") WITHOUT closing the trajectory …
Oct 24, 2017:
- 4:10 PM Ticket #901 (coordset slider not synchronized with command playback) closed by
- fixed: Fixed.
- 3:26 PM Ticket #899 (trying to save session with morph results nukes ChimeraX) closed by
- fixed: Computation of the pointer offset for per-coord-set pseudobond groups …
- 12:29 PM Ticket #901 (coordset slider not synchronized with command playback) created by
- I'm not sure it ever did, but I just noticed that the slider doesn't …
- 12:19 PM ChangeLog edited by
- (diff)
- 11:41 AM Ticket #896 (hbonds "reveal true" after "hide" shows disconnected atoms) closed by
- fixed: Fixed by having "hide" not implicitly add "bonds" as a target
- 11:33 AM Ticket #900 (morph command IndexError: vector) closed by
- fixed: Fixed as part of #899.
- 11:31 AM Ticket #900 (morph command IndexError: vector) created by
- open 2fvy open 2fw0 mm #2 to #1 morph #1 #2 Traceback (most recent …
Oct 23, 2017:
- 6:24 PM Ticket #854 (status line text scaling incorrect on Linux and WIndows) closed by
- fixed: Fixed. Resize event handling was updating the status bar opengl …
- 5:42 PM Ticket #897 (matchmaker AttributeError: 'PseudobondGroup' object has no attribute ...) closed by
- fixed: Starting Structure change tracking wasn't also turning on the …
- 5:38 PM Ticket #898 (tried to save marker with label to file, got AttributeError: ...) closed by
- fixed: Fixed. Specifying model #3 also included the labels model #3.1. Made …
- 4:20 PM Ticket #899 (trying to save session with morph results nukes ChimeraX) created by
- I tried this twice. Nuked ChimeraX both times. open 2fvy open 2fw0 …
- 4:02 PM Ticket #898 (tried to save marker with label to file, got AttributeError: ...) created by
- I added a marker, labeled it, and tried to save it to a file to see …
- 3:55 PM Ticket #897 (matchmaker AttributeError: 'PseudobondGroup' object has no attribute ...) created by
- open 2mnr open 4enl mm #2 to #1 Error processing trigger "changes" …
- 3:48 PM Ticket #896 (hbonds "reveal true" after "hide" shows disconnected atoms) created by
- Something to do with "hide" hiding all bonds (now that they are …
- 3:06 PM Ticket #895 (Open file problem - NEVER MIND) closed by
- not a bug: Followup to #894
- 3:05 PM Ticket #894 (Open cxs file error) closed by
- not a bug: As per follow-on mail, should have been '.cxc', not '.cxs'
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