Opened 8 years ago

Closed 8 years ago

#905 closed defect (fixed)

Sequence Viewer Bug on Ubuntu 16.04

Reported by: forson.gao15@… Owned by: pett
Priority: normal Milestone:
Component: Sequence Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

Steps to reproduce

On Ubuntu 16.04:

Open a PDB file

Tools -> Sequence -> Sequence Viewer


chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Sequence Viewer in bundle ChimeraX-SEQ-VIEW:
Running MAV from tools menu not implemented; instead, open alignment using 'open' command or File->Open

File "/home/forson/.local/share/chimerax/lib/python3.6/site-packages/chimerax/core/toolshed/info.py", line 478, in start_tool
"start_tool() failed for tool %s in bundle %s:\n%s" % (tool_name, self.name, str(e)))

See log for complete Python traceback.

If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu<mailto:chimerax-bugs@cgl.ucsf.edu> and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created.

Change History (2)

comment:1 by pett, 8 years ago

Component: UnassignedSequence
Owner: set to pett
Platform: all
Project: ChimeraX
Status: newaccepted

comment:2 by pett, 8 years ago

Resolution: fixed
Status: acceptedclosed

Hi Forson,

It may be hard to see in all that red text, but part of the message says: "Running MAV from tools menu not implemented; instead, open alignment using 'open' command or File->Open". Which is what you should do. Nonetheless, I recognize that this behavior is not optimal, so I have removed it from the Tools menu as of tomorrow's build.

--Eric

Eric Pettersen
UCSF Computer Graphics Lab

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