![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 67 minutes ago
#20842 assigned defect
Modeller and seqalign invalid escape sequences
| Reported by: | Tom Goddard | Owned by: | Eric Pettersen |
|---|---|---|---|
| Priority: | moderate | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The ChimeraX test suite is complaining in nightly builds about a couple instances of invalid escape sequences in strings like \. and \s that will "not work in the future". Not sure how they won't work, maybe they mean it will be a hard syntax error when importing the file. At any rate it would be good to change them to the correct
. and
s so the test suite output is not littered.
tests/test_imports_app.py::test_imports[chimerax.modeller.common]
/Users/runner/work/ChimeraX/ChimeraX/chimerax/modeller/common.py:607: SyntaxWarning: "\." is an invalid escape sequence. Such sequences will not work in the future. Did you mean "
."? A raw string is also an option.
generated_model_pattern = re.compile('.*\.B.*\.pdb') # aka *.B*.pdb
tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
/Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:47: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "
s"? A raw string is also an option.
'MSF:\s*(\S*)\s*' # length?
tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
/Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:48: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "
s"? A raw string is also an option.
'Type:\s*(\S*)\s*' # type
tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
/Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:49: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "
s"? A raw string is also an option.
'(.*)\s*' # date/time
tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
/Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:50: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "
s"? A raw string is also an option.
'Check:\s*(\S*)\s*' # checksum
tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
/Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:51: SyntaxWarning: "\." is an invalid escape sequence. Such sequences will not work in the future. Did you mean "
."? A raw string is also an option.
'\.\.') # signature
tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
/Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:53: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "
s"? A raw string is also an option.
'MSF:\s*(\S*)\s*' # length?
tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
/Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:56: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "
s"? A raw string is also an option.
'Check:\s*(\S*)\s*' # checksum
tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
/Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:57: SyntaxWarning: "\." is an invalid escape sequence. Such sequences will not work in the future. Did you mean "
."? A raw string is also an option.
'\.\.') # signature
tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
/Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:60: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "
s"? A raw string is also an option.
'Len:\s*(\S*)\s*' # length
tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
/Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:61: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "
s"? A raw string is also an option.
'Check:\s*(\S*)\s*' # checksum
tests/test_imports_app.py::test_imports[chimerax.seqalign.io.readMSF]
/Users/runner/work/ChimeraX/ChimeraX/chimerax/seqalign/io/readMSF.py:62: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "
s"? A raw string is also an option.
'Weight:\s*(\S*)\s*') # weight
