![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Dec 2, 2025: Today
- 1:06 PM PrivacyAndSecurity edited by
- (diff)
- 12:05 PM Ticket #19468 (alphafold search: 'AtomicStructure' object has no attribute ...) closed by
- wontfix: The command "alphafold predict #1/A" appears to have produced a …
- 11:06 AM Dev2025-12-8 created by
- 11:05 AM DeveloperMeetings edited by
- (diff)
- 11:01 AM Ticket #19463 (Crash in swap_buffers waking from sleep on Mac) closed by
- duplicate: Python traceback shows it is in expose event drawing status line …
- 10:38 AM ChangeLog edited by
- (diff)
- 9:53 AM Ticket #19469 (ChimeraX bug report: black display on Linux) created by
- […] 948e8a41-d879-48de-9c8a-6e5dec028dcc.png
- 9:30 AM Ticket #19468 (alphafold search: 'AtomicStructure' object has no attribute ...) created by
- […]
- 8:59 AM Ticket #19467 (SEQCROW: 'ArtistList' object has no attribute 'remove') created by
- […]
- 3:08 AM Ticket #19466 (ISOLDE: problems refining UTP and CTP) created by
- […]
- 1:51 AM Ticket #19465 (Crash closing tool) created by
- […]
- 1:13 AM Ticket #19464 (Fw: Problem opening local small-molecule CIF file) created by
- […]
Dec 1, 2025: Yesterday
- 9:55 PM Ticket #19463 (Crash in swap_buffers waking from sleep on Mac) created by
- […]
- 7:50 PM Ticket #19462 (Find Cavities not disposing of deleted structures) created by
- […]
- 7:12 PM PrivacyAndSecurity edited by
- (diff)
- 6:44 PM PrivacyAndSecurity created by
- 5:41 PM WikiStart edited by
- (diff)
- 5:31 PM Ticket #19453 (MemoryError saving session) closed by
- fixed: I added an error message when saving a session file gets out of memory …
- 4:28 PM Ticket #19446 (alphafold contacts: atom KeyError) closed by
- can't reproduce: I tested a boltz 2 prediction of phosphorylated 9gi8 homodimer and …
- 4:14 PM Ticket #19458 (glClear: invalid framebuffer operation) closed by
- duplicate: glClear() error in status line on expose event. External Dell …
- 3:55 PM DeveloperMeetings edited by
- (diff)
- 3:54 PM Dev2025-12-1 edited by
- (diff)
- 3:00 PM Ticket #19461 (Crash deleting atoms/bonds) closed by
- worksforme
- 3:00 PM Ticket #19461 (Crash deleting atoms/bonds) reopened by
- 3:00 PM Ticket #19461 (Crash deleting atoms/bonds) closed by
- can't reproduce: The same structures/commands worked for me.
- 2:48 PM Ticket #19460 (H-Bonds: More than 2 coplanar positions specified) closed by
- can't reproduce: Hi Shabir, We don't really have the capability to diagnose problems …
- 2:41 PM Ticket #19459 (Crash in event loop) closed by
- can't reproduce
- 1:59 PM Ticket #19455 (MemoryError saving session including maps) closed by
- can't reproduce: It doesn't look like you have large maps or atomic models open in …
- 1:28 PM Ticket #19444 (Log blank) closed by
- nonchimerax: If you mean the Log panel of ChimeraX is blank, that indicates a …
- 1:24 PM Ticket #19442 (Crash in glBufferSubData changing volume level) closed by
- duplicate: Duplicate of #19441
- 1:23 PM Ticket #19441 (Crash in glBufferSubData changing volume level) closed by
- limitation: Mac M3 OpenGL graphics driver crash. Had 5 1024 x 1024 x 375 int8 …
- 12:03 PM Ticket #19457 (Crash deallocating UserError traceback stack) closed by
- can't reproduce
- 12:00 PM Ticket #19456 (MemoryError saving session including maps) closed by
- duplicate
- 11:53 AM Ticket #19451 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by
- duplicate
- 11:50 AM Ticket #19450 (Crash using open/save dialog) closed by
- can't reproduce
- 11:43 AM Ticket #19449 (KVFinder on old MacOS) closed by
- limitation
- 11:20 AM Ticket #19443 (Crash in connect_structure while opening mmCIF) closed by
- can't reproduce: I don't see the problematic "open" command in the log. Possibly it's …
- 10:25 AM Ticket #19292 (Text entry area nearly invisible in dark mode) closed by
- fixed: Fixed in the current release candidate and in the next daily build. …
- 10:01 AM Dev2025-12-1 edited by
- (diff)
- 8:34 AM Ticket #19461 (Crash deleting atoms/bonds) created by
- […]
- 7:28 AM Ticket #19460 (H-Bonds: More than 2 coplanar positions specified) created by
- […]
- 6:36 AM Ticket #19459 (Crash in event loop) created by
- […]
- 3:15 AM Ticket #19458 (glClear: invalid framebuffer operation) created by
- […]
- 2:24 AM Ticket #19457 (Crash deallocating UserError traceback stack) created by
- […]
Nov 30, 2025:
- 8:05 PM Ticket #19456 (MemoryError saving session including maps) created by
- […]
- 8:04 PM Ticket #19455 (MemoryError saving session including maps) created by
- […]
- 7:25 AM Ticket #19454 (XMAS: find shortest: problem generating CSV/TSV file) created by
- […]
- 2:34 AM Ticket #19453 (MemoryError saving session) created by
- […]
- 1:35 AM Ticket #19452 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
- 1:30 AM Ticket #19451 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
Nov 29, 2025:
Nov 28, 2025:
- 8:48 PM Ticket #19449 (KVFinder on old MacOS) created by
- […]
- 5:36 PM Ticket #19448 (Supported coordinate set looping) created by
- […]
- 9:05 AM Ticket #19447 (Private SMILES fetching) created by
- […] chimerax_openbabel-0.1-py3-none-any.whl
Nov 27, 2025:
- 11:45 PM Ticket #19446 (alphafold contacts: atom KeyError) created by
- […]
- 9:41 AM Ticket #19445 (Web service → ProtocolError) created by
- […]
- 5:30 AM Ticket #19444 (Log blank) created by
- […]
Nov 26, 2025:
- 2:56 PM Ticket #19375 (Animations not calling interpolate_scene) closed by
- fixed: Some over-aggressive optimizations you had in the scene manager's …
- 2:54 PM Ticket #19443 (Crash in connect_structure while opening mmCIF) created by
- […]
- 12:18 PM Ticket #19442 (Crash in glBufferSubData changing volume level) created by
- […]
- 12:13 PM Ticket #19441 (Crash in glBufferSubData changing volume level) created by
- […]
- 11:51 AM Ticket #19440 ('invert' option of 'volume zone' requires 'newMap true') created by
- I would like to invert the display on an existing map for the Phenix …
- 11:13 AM Ticket #19439 (Chain integrity in PDB format) closed by
- fixed: Hi Krista, Thanks for reporting this problem. Please try the …
- 8:24 AM Ticket #19439 (Chain integrity in PDB format) created by
- […] J126_MA.cif
- 3:21 AM Ticket #19438 (Render by Attr select histogram: cannot subtract numpy booleans) created by
- […]
Nov 25, 2025:
- 6:33 PM Ticket #19407 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) closed by
- duplicate: Qt bug.
- 4:06 PM Ticket #19437 (Make it easier to open IHM files with .cif suffixes) closed by
- fixed: Made some improvements which should help a little in opening IHM data. …
- 3:52 PM Ticket #19437 (Make it easier to open IHM files with .cif suffixes) created by
- Brinda Vallat asks if ChimeraX can make it easier to open IHM files …
- 1:58 PM Ticket #19435 (Unable to install Boltz) closed by
- limitation: ChimeraX Boltz cannot be installed on Intel Mac. Unfortunately the …
- 1:28 PM Ticket #18009 (AllMetal3D: wrapped C/C++ object of type QLabel has been deleted) closed by
- duplicate: Duplicate of #17193
- 1:28 PM Ticket #19434 (AllMetal3D: session save: 'AllMetal3D' object has no attribute 'line_edit') closed by
- duplicate: Duplicate of #17193
- 1:24 PM Ticket #19433 (Crash in swap_buffers when status line exposed) closed by
- duplicate
- 1:24 PM Ticket #19432 (Crash on Mac waking from sleep) closed by
- duplicate: The ChimeraX bug report panel said what we know about this crash: …
- 1:19 PM Ticket #19431 (Crash toggling from Rapid Access to 3D graphics) closed by
- can't reproduce: Looks like the same change-GUI-from-a-thread crash
- 1:05 PM Ticket #19430 (Crash toggling from Rapid Access to 3D graphics) closed by
- can't reproduce
- 12:35 PM Ticket #19436 (webcam: Access to camera not granted) closed by
- fixed: Fixed in ChimeraX 1.11 release candidate and daily build (Nov 25 or …
- 12:25 PM Ticket #19436 (webcam: Access to camera not granted) created by
- […]
- 12:01 PM Ticket #19435 (Unable to install Boltz) created by
- […]
- 10:55 AM Dev2025-12-1 edited by
- (diff)
- 10:55 AM Ticket #19434 (AllMetal3D: session save: 'AllMetal3D' object has no attribute 'line_edit') created by
- […]
- 10:54 AM Dev2025-12-1 created by
- 10:53 AM 2025-12-4 created by
- 10:52 AM DeveloperMeetings edited by
- (diff)
- 2:40 AM Ticket #19433 (Crash in swap_buffers when status line exposed) created by
- […]
- 12:46 AM Ticket #19432 (Crash on Mac waking from sleep) created by
- […]
Nov 24, 2025:
- 9:12 PM Ticket #19431 (Crash toggling from Rapid Access to 3D graphics) created by
- […]
- 8:48 PM Ticket #19430 (Crash toggling from Rapid Access to 3D graphics) created by
- […]
- 7:47 PM Ticket #19423 (Black screen after loading session file) closed by
- can't reproduce: Ok, not sure what "close some tabs" means.
- 5:17 PM Ticket #19428 (Crash on Mac waking from sleep) closed by
- duplicate: The ChimeraX bug report panel said what we know about this crash: …
- 5:02 PM Ticket #19429 (Local Modeller unnecessarily asking for license key) created by
- per summary
- 4:58 PM Ticket #19428 (Crash on Mac waking from sleep) created by
- […]
- 4:57 PM Ticket #19427 (Crash computing secondary structure) created by
- […]
- 4:40 PM Ticket #19415 (ui tool show: name 'commas' is not defined) closed by
- fixed: Fix will be in tomorrow's daily build and release candidate
- 4:10 PM Ticket #19425 (Testing anonymous bug reporting with ChimeraX 1.11 release candidate) closed by
- worksforme
- 4:09 PM Ticket #19426 (Testing anonymous bug report from ChimeraX 1.12) closed by
- worksforme
- 4:03 PM Ticket #19426 (Testing anonymous bug report from ChimeraX 1.12) created by
- […]
- 4:02 PM Ticket #19425 (Testing anonymous bug reporting with ChimeraX 1.11 release candidate) created by
- […]
- 3:59 PM Ticket #19424 (Test of bug reporter in ChimeraX 1.11 release candidate) closed by
- fixed: Bug report worked with email address filled in. I did not try with no …
- 3:54 PM Dev2025-11-24 edited by
- (diff)
- 3:53 PM Dev2025-11-24 edited by
- (diff)
- 3:12 PM Ticket #19424 (Test of bug reporter in ChimeraX 1.11 release candidate) created by
- […]
- 3:08 PM Ticket #19423 (Black screen after loading session file) created by
- […]
- 2:12 PM Ticket #19421 (Crash in event loop) closed by
- can't reproduce
- 2:10 PM Ticket #19420 (Crash garbage collecting file dialog) closed by
- can't reproduce: Probably the save dialog with the "image" format
- 2:05 PM Ticket #19419 (alignment widget not properly destroying when tool closed) closed by
- duplicate: Duplicate of #18702
- 11:59 AM Ticket #19418 (Cannot save session) closed by
- not a bug: Hi Carolyn, ChimeraX session files end with a ".cxs" file suffix. So …
- 11:56 AM Ticket #19416 (Expose status bar: glClear: invalid framebuffer operation, macOS 26, ...) closed by
- duplicate: The usual glClear error with macOS 26, using an external Asus display …
- 11:55 AM Ticket #19417 (Segmentations: chimerax misspelled in import statement) closed by
- duplicate
- 11:51 AM Ticket #19402 (ArrayMemoryError saving large image) closed by
- limitation: Out of memory trying to save an absurdly large image 6000 by 5414. …
- 11:45 AM Ticket #19401 (Expose status bar: glClear: invalid framebuffer operation) closed by
- duplicate: This error is a bug in the Qt window toolkit on Mac that ChimeraX uses …
- 11:36 AM Ticket #19412 (ChopChopMF should not declare non-existent ChopChopMF tool in its ...) closed by
- duplicate: Duplicate of #19363
- 11:35 AM Ticket #19411 (ChopChopMF should not declare non-existent ChopChopMF tool in its ...) closed by
- duplicate: Duplicate of #19363
- 11:30 AM Ticket #19406 (Crash in event loop) closed by
- can't reproduce
- 11:28 AM Ticket #19405 (Crash using open/save dialog) closed by
- can't reproduce
- 11:27 AM Ticket #19404 (Crash in event loop) closed by
- can't reproduce
- 10:01 AM ChangeLog edited by
- (diff)
- 9:28 AM Ticket #19422 (The server encountered an internal error or misconfiguration) created by
- […]
- 2:55 AM Ticket #19421 (Crash in event loop) created by
- […]
- 1:53 AM Ticket #19420 (Crash garbage collecting file dialog) created by
- […]
- 12:30 AM Ticket #19419 (alignment widget not properly destroying when tool closed) created by
- […]
Nov 23, 2025:
Nov 22, 2025:
- 11:26 AM Ticket #19408 (Mac Intel build error making dmg, hdiutil cannot detach image) closed by
- fixed: I increased the number of detach retries (from whatever the default …
- 6:34 AM Ticket #19417 (Segmentations: chimerax misspelled in import statement) created by
- […]
- 6:10 AM Ticket #19416 (Expose status bar: glClear: invalid framebuffer operation, macOS 26, ...) created by
- […]
- 2:06 AM Ticket #19415 (ui tool show: name 'commas' is not defined) created by
- […]
Nov 21, 2025:
- 12:16 PM Ticket #19414 (Clipper: MTZ: Cannot determine the correct value for the free ...) created by
- […]
- 11:51 AM Ticket #19413 (Clipper: open MTZ: multiple experimental reflection datasets found) created by
- […]
- 11:51 AM Ticket #19412 (ChopChopMF should not declare non-existent ChopChopMF tool in its ...) created by
- […]
- 11:48 AM Ticket #19411 (ChopChopMF should not declare non-existent ChopChopMF tool in its ...) created by
- […]
- 11:44 AM Ticket #19410 (Make a ChimeraX help chatbot using Google NotebookLM) created by
- In August 2025 Matthias Vorlander made a ChimeraX AI chatbot that …
- 11:24 AM Ticket #19409 (Document the --cmd option) created by
- The --cmd option when starting up ChimeraX does not appear in our …
- 11:19 AM Ticket #19408 (Mac Intel build error making dmg, hdiutil cannot detach image) created by
- The Intel Mac build failed in making a DMG with the following error. …
- 5:22 AM Ticket #19407 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) created by
- […]
- 12:35 AM Ticket #19406 (Crash in event loop) created by
- […]
- 12:32 AM Ticket #19405 (Crash using open/save dialog) created by
- […]
Nov 20, 2025:
- 11:20 PM Ticket #19404 (Crash in event loop) created by
- […]
- 9:18 PM Ticket #18237 (Show white-on-black SVGs for segmentations controls when in dark mode) closed by
- fixed: Fixed as of 0e7156f5a8dd2812b31164b7201138cba0f2824f
- 6:51 PM Dev2025-11-17 edited by
- (diff)
- 6:41 PM 2025-11-20 edited by
- (diff)
- 6:29 PM Ticket #19403 (Add structure coloring controls to mutation scores scatter plot) created by
- Willow suggested adding controls to the mutation scores scatter plot …
- 2:12 PM Ticket #19402 (ArrayMemoryError saving large image) created by
- […]
- 1:53 PM Ticket #19397 (surface dust: ArrayMemoryError) closed by
- nonchimerax: User opened a 0.5 GB map on a Windows 11 machine with 8 GB, showed …
- 12:34 PM Ticket #19401 (Expose status bar: glClear: invalid framebuffer operation) created by
- […]
- 12:19 PM Ticket #19400 (Have Render By Attribute externally controllable) created by
- Allow other code to bring up Render By Attribute showing desired …
- 10:47 AM Ticket #19399 (KVFinder on old MacOS) closed by
- duplicate: Hi Chris, Unfortunately, the underlying pyKVFinder program that …
- 9:02 AM Ticket #19398 (Molecular Dynamics Viewer: list index out of range) closed by
- limitation
- 8:58 AM Ticket #19396 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by
- duplicate
- 4:55 AM Ticket #19399 (KVFinder on old MacOS) created by
- […]
Nov 19, 2025:
- 10:09 PM Ticket #19398 (Molecular Dynamics Viewer: list index out of range) created by
- […]
- 8:25 PM Ticket #19397 (surface dust: ArrayMemoryError) created by
- […]
- 2:17 PM phenix-11-20-25 edited by
- (diff)
- 2:11 PM phenix-11-20-25 edited by
- (diff)
- 2:03 PM phenix-11-20-25 created by
- 1:28 PM Ticket #19396 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by
- […]
- 1:23 PM Features edited by
- (diff)
- 11:32 AM Ticket #19395 (PICKLUSTER treating PseudobondGroups as Structures) closed by
- duplicate: Duplicate of #14628
- 11:22 AM Ticket #19393 (Crash in NSAccessibility routine) closed by
- can't reproduce: Probable Mac Qt bug in NSAccessibility code, crashed in …
- 11:20 AM Ticket #19390 (QDxgiVSyncService not destroyed in time) closed by
- can't reproduce: Qt or graphics problem.
- 11:17 AM Ticket #19387 (Crash creating QWebEngineProfile) closed by
- duplicate: Long standing Qt bug.
- 10:14 AM Ticket #19394 (ffmpeg: Permission denied) closed by
- duplicate: Hi Milos, Thanks for reporting this problem. It is fixed in the …
- 10:08 AM Ticket #19392 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by
- duplicate
- 10:07 AM Ticket #19391 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by
- duplicate
- 10:01 AM Ticket #19389 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by
- duplicate
- 6:05 AM Ticket #19395 (PICKLUSTER treating PseudobondGroups as Structures) created by
- […]
- 6:01 AM Ticket #19394 (ffmpeg: Permission denied) created by
- […]
- 3:30 AM Ticket #19393 (Crash in NSAccessibility routine) created by
- […]
- 1:26 AM Ticket #19392 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
- 1:18 AM Ticket #19391 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
- 1:03 AM Ticket #19390 (QDxgiVSyncService not destroyed in time) created by
- […]
- 12:50 AM Ticket #19389 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
- 12:15 AM Ticket #19388 ('Segmentation' object has no attribute 'data') created by
- […]
Nov 18, 2025:
- 8:15 PM Ticket #19387 (Crash creating QWebEngineProfile) created by
- […]
- 5:56 PM Ticket #19247 (Scenes Add button refuses to add because name matches an existing scene) closed by
- fixed: Available in next build
- 3:48 PM Ticket #19386 (Boltz batch ligand run gives error in nogui mode) closed by
- fixed: Fixed. Don't show ligand table if there is no gui. Unfortunately the …
- 3:29 PM Ticket #19386 (Boltz batch ligand run gives error in nogui mode) created by
- […]
- 12:38 PM Ticket #19385 (Improving AI use of documentation with HTML semantic tags) created by
- The documentation could be enhanced to make it easier for AI agents …
- 10:01 AM Dev2025-11-24 created by
- 10:00 AM 2025-11-20 edited by
- (diff)
- 10:00 AM 2025-11-20 created by
- 10:00 AM DeveloperMeetings edited by
- (diff)
- 9:49 AM Ticket #19384 (glClear: invalid framebuffer operation on statusbar expose) closed by
- duplicate: Three external displays (Dell) connected. OpenGL error in expose …
- 9:46 AM Ticket #19383 (Crash changing window focus in Mac NSAccessiblity) closed by
- can't reproduce: Crash in a QTreeWidget, and apparently in init_type_QFontComboBox. …
- 9:12 AM Ticket #19382 (Crash on Mac waking from sleep in OpenGL swap_buffers) closed by
- duplicate
- 8:10 AM Ticket #19384 (glClear: invalid framebuffer operation on statusbar expose) created by
- […]
- 4:26 AM Ticket #19383 (Crash changing window focus in Mac NSAccessiblity) created by
- […]
Nov 17, 2025:
- 10:50 PM Ticket #19382 (Crash on Mac waking from sleep in OpenGL swap_buffers) created by
- […]
- 2:30 PM Ticket #19184 (Find Cavities problem with insertion codes) closed by
- can't reproduce: The contacting residue info returned by pyKVFinder.grid.constitutional …
- 11:57 AM Ticket #19378 (Crash on Mac waking from sleep) closed by
- duplicate: The ChimeraX bug report panel said what we know about this crash: …
- 11:45 AM Ticket #19381 (ffmpeg: Permission Denied) closed by
- duplicate: Hi Fiona, Thanks for reporting this problem. It is fixed in the …
- 11:41 AM Ticket #19380 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) closed by
- duplicate
- 11:39 AM Ticket #19379 (Crash in Qt destructor during traceback release) closed by
- can't reproduce
- 11:33 AM Ticket #19377 (Thanks for your help) closed by
- not a bug: Hi Jeffrey, you're welcome! Another release coming out soon. :-)
- 11:31 AM Ticket #19376 (Crash deleting atoms after custom script) closed by
- fixed: Hi Zeng, Thanks for reporting this problem. Please try the daily …
- 11:21 AM Ticket #19374 (Crash using open/save dialog) closed by
- can't reproduce
- 11:21 AM Ticket #19381 (ffmpeg: Permission Denied) created by
- […]
- 10:27 AM Ticket #19380 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) created by
- […]
- 2:02 AM Ticket #19379 (Crash in Qt destructor during traceback release) created by
- […]
Nov 16, 2025:
- 2:48 PM Ticket #19378 (Crash on Mac waking from sleep) created by
- […]
- 1:55 PM Ticket #19377 (Thanks for your help) created by
- […]
- 8:10 AM Ticket #19376 (Crash deleting atoms after custom script) created by
- […]
- 7:42 AM Ticket #19375 (Animations not calling interpolate_scene) created by
- In the current daily build, the Animations tool is not calling …
- 6:06 AM Ticket #19374 (Crash using open/save dialog) created by
- […]
- 3:13 AM Ticket #19373 (Out of memory converting Gromacs list of numpy coords to 2D numpy array) created by
- […]
Nov 15, 2025:
Nov 14, 2025:
- 1:52 PM Ticket #17469 (Offer to stop long-running tasks) closed by
- fixed: Now after 30 seconds, realignment jobs will bring up a dialog offering …
- 1:46 PM Ticket #19370 (Structure scene interpolation: KeyError: 'structure') closed by
- fixed: Old scenes could be missing data that the interpolation code relied …
- 12:18 PM Ticket #19371 (Crash while docking tool) closed by
- duplicate: Crashed in QDockWidget::event(). This is probably the same crash I …
- 12:11 PM Ticket #19368 (Crash in garbage collection while PIL is saving image from save dialog) closed by
- can't reproduce: Seems the Python garbage collector tried to delete the Qt file dialog …
- 9:43 AM Ticket #19369 (Some kind of OpenGL or CUDA crash) closed by
- can't reproduce
- 9:40 AM Ticket #19371 (Crash while docking tool) created by
- […]
- 9:37 AM Ticket #19370 (Structure scene interpolation: KeyError: 'structure') created by
- […] scenes2.cxs
- 5:27 AM Ticket #19369 (Some kind of OpenGL or CUDA crash) created by
- […]
Nov 13, 2025:
- 10:23 PM Ticket #19368 (Crash in garbage collection while PIL is saving image from save dialog) created by
- […]
- 5:59 PM Ticket #19086 (Problem mapping features onto UniProt entry) closed by
- fixed: Some features may have no blocks where both ends are known. Fix: …
- 4:02 PM Ticket #18994 (Alignment observer not in list) closed by
- can't reproduce: Scripted the above commands, but bupkis.
- 3:58 PM Ticket #19367 (Replace RCSB ligand-expo URL which is being retired.) created by
- The Ligand Expo RCSB site is being retired and the following URL will …
- 3:49 PM Ticket #19366 (Out of memory saving huge image) closed by
- limitation: Trying to make a large image 10000 x 7000 using Intel graphics which …
- 3:46 PM Ticket #19365 (Spin movie: permission denied) closed by
- nonchimerax: Failed to launch ffmpeg process with PermissionError. Online reports …
- 3:39 PM 2025-11-13 edited by
- (diff)
- 3:33 PM Ticket #19254 (Missing bonds) closed by
- not a bug: Hi, With no explicit bonding information provided (i.e. CONECT/LINK …
- 1:22 PM Ticket #19331 (Truncated session file) closed by
- not a bug: The session reader could conceivably issue a more user-friendly error …
- 1:17 PM Ticket #19130 (Modeller: 'charmap' codec can't encode character) closed by
- can't reproduce: Can't reproduce on my Mac or on a Windows machine. I do get a …
- 1:15 PM Ticket #19366 (Out of memory saving huge image) created by
- […]
- 1:15 PM Ticket #19365 (Spin movie: permission denied) created by
- […]
- 1:15 PM Ticket #19364 (ChimeraX tools not starting and other problems) created by
- […]
- 1:15 PM Ticket #19363 (ChopChopMF should not declare non-existent ChopChopMF tool in its ...) created by
- […]
Nov 12, 2025:
- 10:42 AM Ticket #19331 (Truncated session file) created by
- […]
- 10:34 AM Ticket #19326 (3D graphics white/blank) closed by
- nonchimerax: This is caused by a broken graphics driver. I see you are using a …
- 10:30 AM Ticket #19323 (Mutation Scores not handling InvalidAccessionError) closed by
- fixed: Fixed. Improved error checking for uniprot id argument when fetching …
- 9:26 AM Ticket #19329 (Multiple consecutive Find Cavities: dead models) closed by
- can't reproduce: Possibly fixed by changes on 10/15/25 to immediately hide launcher window.
- 9:25 AM Ticket #19328 (Multiple consecutive Find Cavities: dead models) closed by
- can't reproduce: Possibly fixed by changes on 10/15/25 to immediately hide launcher window.
- 9:24 AM Ticket #19327 (Multiple consecutive Find Cavities: dead models) closed by
- can't reproduce: Possibly fixed by changes on 10/15/25 to immediately hide launcher window.
- 9:19 AM Ticket #19325 (Crash in swap_buffers on Mac waking from sleep) closed by
- duplicate
- 9:17 AM Ticket #19324 (ffmpeg: Permission denied) closed by
- duplicate: Hi Jeffrey, Thanks for reporting this problem. It is fixed in the …
- 8:21 AM Ticket #19330 (glTexImage3D: out of memory after "artiax view xy") created by
- […]
Nov 11, 2025:
- 2:43 PM Ticket #19329 (Multiple consecutive Find Cavities: dead models) created by
- […]
- 2:43 PM Ticket #19328 (Multiple consecutive Find Cavities: dead models) created by
- […]
- 2:42 PM Ticket #19327 (Multiple consecutive Find Cavities: dead models) created by
- […]
- 11:26 AM Dev2025-11-17 created by
- 11:25 AM 2025-11-13 created by
- 11:25 AM DeveloperMeetings edited by
- (diff)
- 9:53 AM Ticket #19326 (3D graphics white/blank) created by
- […]
- 9:08 AM Ticket #19325 (Crash in swap_buffers on Mac waking from sleep) created by
- […]
- 3:32 AM Ticket #19324 (ffmpeg: Permission denied) created by
- […]
Nov 10, 2025:
- 5:39 PM Ticket #18879 (Scenes tool: using Delete leaves name filled in and Update button) closed by
- fixed
- 5:26 PM Ticket #18878 (Somehow model.overall_color is being saved/restored) closed by
- can't reproduce: Thanks for the session, but try as I might I cannot reproduce this. …
- 4:45 PM Ticket #18875 (Scenes involving deleted atoms needs better error handling) closed by
- fixed
- 4:45 PM Ticket #18875 (Scenes involving deleted atoms needs better error handling) reopened by
- 4:45 PM Ticket #18875 (Scenes involving deleted atoms needs better error handling) closed by
- wontfix: If atoms have been deleted, now a warning is issued about deleting …
- 3:37 PM DeveloperMeetings edited by
- (diff)
- 3:37 PM Dev2025-11-9 edited by
- (diff)
- 3:34 PM Dev2025-11-9 edited by
- (diff)
- 2:11 PM Ticket #19323 (Mutation Scores not handling InvalidAccessionError) created by
- […]
- 12:02 PM Ticket #19320 (Save MRC: could not broadcast input array) closed by
- duplicate: This was fixed a month or two ago in the ChimeraX daily builds. This …
- 12:00 PM Ticket #19321 (glClear: invalid framebuffer operation) closed by
- duplicate: This ChimeraX OpenGL error I believe happens on Mac when the computer …
- 11:53 AM Ticket #19319 (AlphaFold JSON drag and drop: pae_path is None) closed by
- fixed: Fixed. User opened AlphaFold 3 structure then split it by chain then …
- 11:39 AM Ticket #19317 (Crash on Mac waking from sleep) closed by
- duplicate: The ChimeraX bug report panel explained what we know about this crash: …
- 10:26 AM Ticket #19318 (Coulombic: residue already deleted) closed by
- can't reproduce: Would need the input file
- 9:11 AM Ticket #19322 (SEQCROW XYZ reader returning None) created by
- […]
- 5:04 AM Ticket #19321 (glClear: invalid framebuffer operation) created by
- […]
Nov 9, 2025:
- 8:51 PM Ticket #19320 (Save MRC: could not broadcast input array) created by
- […]
- 6:49 PM Ticket #19319 (AlphaFold JSON drag and drop: pae_path is None) created by
- […]
Nov 8, 2025:
- 7:13 PM Ticket #19318 (Coulombic: residue already deleted) created by
- […]
- 3:27 PM Ticket #19317 (Crash on Mac waking from sleep) created by
- […]
Nov 7, 2025:
- 1:10 PM Ticket #19316 (ffmpeg: Permission denied) closed by
- duplicate: Hi, Thanks for reporting this problem. It is fixed in the 1.10.1 …
- 11:17 AM Ticket #19314 (Crash moving window between screens) closed by
- duplicate: The ChimeraX bug report panel said what we know about this crash: …
- 11:12 AM Ticket #19311 (glClear: invalid framebuffer operation) closed by
- duplicate
- 10:42 AM Ticket #19316 (ffmpeg: Permission denied) created by
- […]
- 10:40 AM Ticket #19315 (Animation GUI example animations) created by
- Here are example animations that we hope the Animation GUI will be …
- 10:03 AM Ticket #19313 (kvfinder: self._positions is None) closed by
- duplicate: Duplicate of #18297
- 10:02 AM Ticket #19312 (kvfinder: self._positions is None) closed by
- duplicate: Duplicate of #18297
- 9:51 AM Ticket #19310 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by
- duplicate
- 9:50 AM Ticket #19309 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by
- duplicate
- 9:48 AM Ticket #19308 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by
- duplicate
- 9:40 AM Ticket #19314 (Crash moving window between screens) created by
- […]
- 6:45 AM Ticket #19313 (kvfinder: self._positions is None) created by
- […]
- 6:45 AM Ticket #19312 (kvfinder: self._positions is None) created by
- […]
- 12:26 AM Ticket #19311 (glClear: invalid framebuffer operation) created by
- […]
Nov 6, 2025:
- 8:39 PM Ticket #19310 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by
- […]
- 8:38 PM Ticket #19309 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by
- […]
- 8:37 PM Ticket #19308 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by
- […]
- 5:48 PM Ticket #19203 (REST server attempting to encode Atom into response) closed by
- fixed: The JSON was handling the direct return of atomic items, but not if …
- 4:25 PM 2025-11-6 edited by
- (diff)
- 4:24 PM 2025-11-6 edited by
- (diff)
- 4:21 PM DeveloperMeetings edited by
- (diff)
- 3:54 PM Ticket #19304 (glClear: invalid framebuffer operation) closed by
- duplicate: 5th duplicate of same glClear error from same reporter #19289. Mac …
- 3:54 PM Ticket #19306 (ffmpeg: Permission Denied) closed by
- duplicate: Hi Swastik, Thanks for reporting this problem. It is fixed in the …
- 3:51 PM Ticket #19305 (Crash on Mac waking from sleep) closed by
- duplicate
- 3:45 PM Ticket #19307 (Scene needs) created by
- 9/25/25 as you said (this is mainly a note to self), cannot delete …
- 3:45 PM Ticket #19300 (Crash in swap_buffers) closed by
- duplicate: Crash in QOpenGLContext::swapBuffers() after waking from sleep and …
- 3:41 PM Ticket #19299 (Crash on Mac waking from sleep) closed by
- duplicate: The ChimeraX bug report panel said what we know about this crash: …
- 3:39 PM Ticket #19298 (Crash on Mac waking from sleep) closed by
- duplicate: The ChimeraX bug report panel said what we know about this crash: …
- 2:42 PM Ticket #19303 (Crash due to second screen: Cannot change screens) closed by
- can't reproduce
- 2:39 PM Ticket #19302 (sequence align: 'StructureSeq' object has no attribute 'atomspec') closed by
- fixed: Fixed the "sequence align" problem, which might also fix the follow-on …
- 1:54 PM Ticket #19301 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by
- duplicate
- 12:20 PM Ticket #19306 (ffmpeg: Permission Denied) created by
- […]
- 11:34 AM Ticket #19305 (Crash on Mac waking from sleep) created by
- […]
- 6:01 AM Ticket #19304 (glClear: invalid framebuffer operation) created by
- […]
- 4:52 AM Ticket #19303 (Crash due to second screen: Cannot change screens) created by
- […]
- 1:34 AM Ticket #19302 (sequence align: 'StructureSeq' object has no attribute 'atomspec') created by
- […] log_06_11_25.html …
- 1:02 AM Ticket #19301 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by
- […]
Nov 5, 2025:
- 11:39 PM windows-signing edited by
- (diff)
- 11:31 PM Ticket #19300 (Crash in swap_buffers) created by
- […]
- 6:09 PM Ticket #19299 (Crash on Mac waking from sleep) created by
- […]
- 5:39 PM Ticket #18886 (Associated structure with profile grid sequence is slow) closed by
- limitation: Well, this is not particularly simple. The association algorithm …
- 4:20 PM WikiStart edited by
- (diff)
- 3:04 PM Ticket #4168 (Show alternate locations simultaneously) closed by
- fixed: In addition to the previously available "altlocs show" command, the …
- 12:26 PM Ticket #19298 (Crash on Mac waking from sleep) created by
- […]
- 11:30 AM Ticket #19297 (glClear: invalid framebuffer operation) closed by
- duplicate: Same reporter, same bug, #19289. Have seen this before involving usbc …
- 11:28 AM Ticket #19296 (glClear: invalid framebuffer operation) closed by
- duplicate: Same reporter, same bug, #19289. Have seen this before involving usbc …
- 11:27 AM Ticket #19291 (glClear: invalid framebuffer operation) closed by
- duplicate: Same reporter, same bug, #19289. Have seen this before involving usbc …
- 10:30 AM Ticket #19293 (Sequence viewer: lambda needs *args) closed by
- fixed
- 9:35 AM Ticket #19297 (glClear: invalid framebuffer operation) created by
- […]
- 6:02 AM Ticket #19296 (glClear: invalid framebuffer operation) created by
- […]
- 2:18 AM Ticket #19295 (Find Cavities suggestions) created by
- […]
Nov 4, 2025:
- 7:09 PM Ticket #19294 (Mutation score scatterplot mouse position wrong.) closed by
- fixed: Fixed. Updated ChimeraX to use matplotlib 3.10.7 instead of 3.10.5 …
- 7:03 PM Ticket #19294 (Mutation score scatterplot mouse position wrong.) created by
- […]
- 4:35 PM Ticket #19255 (Adding charges to atoms) closed by
- fixed: Confirmed that current x86_64 daily build flatpak works.
- 3:57 PM Ticket #19293 (Sequence viewer: lambda needs *args) created by
- […]
- 2:35 PM Ticket #19292 (Text entry area nearly invisible in dark mode) created by
- […] Screenshot from 2025-11-04 17-33-20.png
- 12:05 PM Ticket #19291 (glClear: invalid framebuffer operation) created by
- […]
- 11:00 AM Ticket #19289 (glClear: invalid framebuffer operation) closed by
- duplicate: This OpenGL error on Mac in glClear on expose of status line was …
- 10:41 AM Dev2025-11-9 created by
- 10:40 AM 2025-11-6 created by
- 10:39 AM 2025-10-30 edited by
- (diff)
- 10:38 AM DeveloperMeetings edited by
- (diff)
- 9:37 AM Ticket #19290 (SEQCROW: reading ORCA output: index 0 is out of bounds for axis 0 with ...) created by
- […]
- 9:15 AM Ticket #19288 (Crash in event loop) closed by
- can't reproduce
- 9:14 AM Ticket #19287 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by
- duplicate
- 9:06 AM Ticket #19285 (Not a PDB file) closed by
- not a bug
- 9:03 AM Ticket #19284 (Crash on Mac waking from sleep) closed by
- duplicate
- 8:50 AM Ticket #19282 (save pdb doesn't preserve segid) closed by
- duplicate: Hi, Yes, ChimeraX currently does not preserve the segment ID. I am …
- 8:05 AM Ticket #19289 (glClear: invalid framebuffer operation) created by
- […]
- 4:33 AM Ticket #19288 (Crash in event loop) created by
- […]
- 12:42 AM Ticket #19287 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
- 12:21 AM Ticket #19286 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by
- […]
Nov 3, 2025:
- 7:51 PM Ticket #19285 (Not a PDB file) created by
- […]
- 7:07 PM Ticket #19284 (Crash on Mac waking from sleep) created by
- […]
- 6:20 PM Ticket #19283 (MemoryError processing surface) created by
- […]
- 3:47 PM Dev2025-11-3 edited by
- (diff)
- 3:08 PM Dev2025-11-3 edited by
- (diff)
- 1:42 PM Ticket #19282 (save pdb doesn't preserve segid) created by
- […]
- 12:43 PM Ticket #19281 (Crash during Boltz output) closed by
- can't reproduce: I suspect this crash was a graphics driver problem. The last messages …
- 12:39 PM Ticket #19280 (Crash on Mac waking from sleep) closed by
- duplicate: The ChimeraX bug report panel said what we know about this crash: …
- 10:41 AM Ticket #19279 (Vina output in ViewDock: KeyError: 'RMSD l.b.') closed by
- duplicate: Duplicate of #18804
- 10:38 AM Ticket #19278 (Combine into existing model) closed by
- not a bug: This no longer raises a traceback.
- 10:21 AM Ticket #19275 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by
- duplicate
- 10:20 AM Ticket #19273 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by
- duplicate
- 10:16 AM Ticket #19272 (Closing segmentation cursors: self._positions is None) closed by
- duplicate: Duplicate of #18753
- 10:15 AM Ticket #19271 (Closing segmentation cursors: self._positions is None) closed by
- duplicate: Duplicate of #18753
- 10:13 AM Ticket #19270 (Crash in event loop) closed by
- can't reproduce: During memory management on Tahoe
- 10:12 AM Ticket #19269 (Crash in event loop) closed by
- can't reproduce
- 9:51 AM Ticket #19268 (Security Measures ChimeraX) closed by
- not a bug: Forwarded to licensing address
- 9:50 AM Ticket #19267 (Closing segmentation cursors: self._positions is None) closed by
- duplicate: Duplicate of #18753
- 9:49 AM Ticket #19266 (Closing segmentation cursors: self._positions is None) closed by
- duplicate: Duplicate of #18753
- 9:48 AM Ticket #19265 (Closing segmentation cursors: self._positions is None) closed by
- duplicate: Duplicate of #18753
- 9:46 AM Ticket #19264 (Closing segmentation cursors: self._positions is None) closed by
- duplicate: Duplicate of #18753
- 9:45 AM Ticket #19263 (Closing segmentation cursors: self._positions is None) closed by
- duplicate: Duplicate of #18753
- 9:25 AM Ticket #19261 (MemoryError reading trajectory) closed by
- limitation
- 8:42 AM Ticket #19281 (Crash during Boltz output) created by
- […]
- 3:31 AM Ticket #19280 (Crash on Mac waking from sleep) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
