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#19471 closed defect (can't reproduce)

Crash using open/save dialog

Reported by:	chimerax-bug-report@…	Owned by:	Eric Pettersen
Priority:	normal	Milestone:
Component:	UI	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.26200
ChimeraX Version: 1.11.dev202509240054 (2025-09-24 00:54:24 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line Windows fatal exception: code 0x8001010e

1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py"Windows fatal exception: code 0x, line 10028001010e

 in _bootstrapWindows fatal exception: 
code 0x
8001010eThread 0x

0000a0dc (most recent call first):
Windows fatal exception:   File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py

"Windows fatal exception: , line code 0x1938001010e in 

_from_kwarg_name_to_kwarg_name_Windows fatal exception: 
code 0x  File 8001010e"

C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line code 0x3248001010e in 

show_open_file_dialog
Windows fatal exception:   File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py

"Windows fatal exception: , line code 0x2768001010e in 

Windows fatal exception: 
code 0x  File 8001010e"

C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.pyWindows fatal exception: "code 0x, line 8001010e368

 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File Windows fatal exception: code 0x"C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py8001010e

"Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x, line 10648001010e

 in Windows fatal exception: init
  File "code 0x8001010e

Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py"code 0x, line 8001010e1229

 in Windows fatal exception: 
  File "code 0x8001010e

"Windows fatal exception: , line code 0x888001010e in 

_run_code
Windows fatal exception: code 0x  File "8001010e

"Windows fatal exception: , line code 0x1988001010e in 

_run_module_as_mainWindows fatal exception: 
code 0xWindows fatal exception: 8001010ecode 0x

8001010eThread 0x

00009fb0Windows fatal exception:  (most recent call first):
code 0x  File 8001010e"

C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line Windows fatal exception: code 0x331 in 8001010e

waitWindows fatal exception: 
  File code 0x8001010e"

C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py"Windows fatal exception: , line code 0x6298001010e in 

wait
Windows fatal exception:   File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py

", line Windows fatal exception: 1399code 0x in 8001010erun


  File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py8001010e"

, line Windows fatal exception: 1045code 0x in 8001010e_bootstrap_inner


  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "Windows fatal exception: code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py"8001010e

Windows fatal exception: , line code 0x10648001010e in 

init
Windows fatal exception:   File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py

"Windows fatal exception: , line code 0x12298001010e in 

Windows fatal exception: 
code 0x  File 8001010e"

Windows fatal exception: "code 0x, line 8001010e88

 in Windows fatal exception: _run_codecode 0x
8001010e  File 

"Windows fatal exception: code 0x"8001010e, line 

198Windows fatal exception:  in code 0x_run_module_as_main8001010e


Thread 0xWindows fatal exception: 00009fb0code 0x (most recent call first):
8001010e  File 

"C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line Windows fatal exception: 1002code 0x in 8001010e_bootstrap



Thread 0xWindows fatal exception: 0000a0dccode 0x (most recent call first):
8001010e  File 

"Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.pycode 0x"8001010e, line 

193Windows fatal exception:  in code 0x_from_kwarg_name_to_kwarg_name_8001010e


  File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py8001010e"

, line Windows fatal exception: 324code 0x in 8001010eshow_open_file_dialog


Windows fatal exception:   File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py

"Windows fatal exception: , line code 0x2768001010e in 

Windows fatal exception: 
code 0x  File 8001010e"

C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py"Windows fatal exception: , line code 0x3688001010e in 

event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in Windows fatal exception: code 0x8001010eevent_loop


  File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.pycode 0x"8001010e

Windows fatal exception: code 0x8001010e, line 

1064Windows fatal exception:  in code 0xinit8001010e


  File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py8001010e"

, line Windows fatal exception: 1229code 0x in 8001010e


Windows fatal exception:   File code 0x"8001010e

"Windows fatal exception: , line code 0x888001010e in 

_run_codeWindows fatal exception: 
code 0x  File 8001010e"

Windows fatal exception: "code 0x, line 8001010e198

 in Windows fatal exception: _run_module_as_maincode 0x
8001010e

Windows fatal exception: Thread 0xcode 0x00009fb08001010e (most recent call first):


  File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py8001010e"

, line 331Windows fatal exception:  in code 0xwait8001010e


  File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py8001010e"

, line Windows fatal exception: 629code 0x in 8001010ewait


  File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py8001010e"

, line Windows fatal exception: 1399code 0x in 8001010erun


Windows fatal exception:   File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py"

, line 1045Windows fatal exception:  in code 0x_bootstrap_inner8001010e


  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193Windows fatal exception:  in code 0x_from_kwarg_name_to_kwarg_name_8001010e


  File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.pycode 0x"8001010e, line 

324Windows fatal exception:  in code 0xshow_open_file_dialog8001010e


  File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py8001010e"

, line Windows fatal exception: 276code 0x in 8001010e


Windows fatal exception:   File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py

"Windows fatal exception: , line code 0x3688001010e in 

event_loop
Windows fatal exception:   File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py

"Windows fatal exception: code 0x8001010e

Windows fatal exception: , line code 0x10648001010e in 

init
Windows fatal exception:   File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py

", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "Windows fatal exception: code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py"8001010e

, line Windows fatal exception: 1045code 0x in 8001010e

_bootstrap_innerWindows fatal exception: 
code 0x  File 8001010e"C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py"

, line 1002Windows fatal exception: code 0x in _bootstrap
8001010e


Windows fatal exception: code 0xThread 0x0000a0dc (most recent call first):
8001010e

  File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py8001010e"

, line Windows fatal exception: 193code 0x in 8001010e_from_kwarg_name_to_kwarg_name_


Windows fatal exception: code 0x8001010e  File "

C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.pyWindows fatal exception: code 0x", line 8001010e

324 in Windows fatal exception: code 0xshow_open_file_dialog
8001010e

  File Windows fatal exception: code 0x"C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py8001010e

", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e



Thread 0x00009fb0Windows fatal exception:  (most recent call first):
code 0x  File 8001010e"C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py

", line Windows fatal exception: 331code 0x in 8001010ewait


  File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py8001010e"

, line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py"Windows fatal exception: code 0x, line 10458001010e in 

_bootstrap_inner
Windows fatal exception:   File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py

"Windows fatal exception: , line code 0x10028001010e in 

_bootstrapWindows fatal exception: 
code 0x
8001010eThread 0x

0000a0dcWindows fatal exception:  (most recent call first):
code 0x  File 8001010e

"Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.pycode 0x"8001010e, line 

193Windows fatal exception:  in code 0x_from_kwarg_name_to_kwarg_name_8001010e


  File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py8001010e"

, line Windows fatal exception: 324code 0x in 8001010eshow_open_file_dialog


Windows fatal exception:   File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py

"Windows fatal exception: , line code 0x2768001010e in 


  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "Windows fatal exception: code 0x8001010e"

, line 198 in Windows fatal exception: _run_module_as_maincode 0x
8001010e

Windows fatal exception: Thread 0xcode 0x00009fb08001010e (most recent call first):


  File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py8001010e"

, line Windows fatal exception: 331code 0x in 8001010ewait


Windows fatal exception:   File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py

"Windows fatal exception: , line code 0x6298001010e in 

wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198Windows fatal exception: code 0x8001010e in _run_module_as_main


Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x

8001010eThread 0x

00009fb0Windows fatal exception:  (most recent call first):
code 0x  File 8001010e"

C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.pyWindows fatal exception: "code 0x, line 8001010e331

 in Windows fatal exception: wait
  File code 0x8001010e

"Windows fatal exception: code 0x8001010e

C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py"Windows fatal exception: , line 629 in code 0x8001010ewait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py

"Windows fatal exception: code 0x, line 13998001010e

 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in 
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00009fb0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Thread 0x0000a0dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\updateloop.py"Windows fatal exception: access violation

===== Log before crash start =====
UCSF ChimeraX version: 1.11.dev202509240054 (2025-09-24)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.00.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.00.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.00.pdb #1  
---  
Chain | Description  
A | No description available  
C | No description available  
  
Computing secondary structure  

> select /C:1-607

5464 atoms, 5569 bonds, 4 pseudobonds, 581 residues, 2 models selected  

> select /A:1-40

376 atoms, 385 bonds, 40 residues, 1 model selected  

> close

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.00.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.00.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.00.pdb #1  
---  
Chain | Description  
A | No description available  
C | No description available  
  
Computing secondary structure  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.01.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.01.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.01.pdb #2  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.02.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.02.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.02.pdb #3  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.03.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.03.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.03.pdb #4  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.04.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.04.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.04.pdb #5  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.05.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.05.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.05.pdb #6  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.06.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.06.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.06.pdb #7  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.07.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.07.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.07.pdb #8  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.08.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.08.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.08.pdb #9  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.09.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.09.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.09.pdb #10  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.10.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.10.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.10.pdb #11  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.11.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.11.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.11.pdb #12  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.12.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.12.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.12.pdb #13  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.13.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.13.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.13.pdb #14  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.14.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.14.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.14.pdb #15  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.15.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.15.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.15.pdb #16  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.16.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.16.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.16.pdb #17  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.17.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.17.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.17.pdb #18  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.18.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.18.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.18.pdb #19  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.19.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.19.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.19.pdb #20  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.20.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.20.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.20.pdb #21  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open
> C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.21.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/cluspro.1369173.000.22/cluspro.1369173/model.000.21.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.21.pdb #22  
---  
Chain | Description  
A | No description available  
C | No description available  
  
Computing secondary structure  

> close

> open
> C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/ClusPro/HER2-EGF1/HER2-EGF1-FULL/1/cluspro.1369173.000.22/cluspro.1369173/model.000.00.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/ClusPro/HER2-EGF1/HER2-EGF1-FULL/1/cluspro.1369173.000.22/cluspro.1369173/model.000.00.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.00.pdb #1  
---  
Chain | Description  
A | No description available  
C | No description available  
  
Computing secondary structure  

> split #1

Split model.000.00.pdb (#1) into 2 models  
Chain information for model.000.00.pdb A #1.1  
---  
Chain | Description  
A | No description available  
  
Chain information for model.000.00.pdb C #1.2  
---  
Chain | Description  
C | No description available  
  

> select #1.1/A:1-40

376 atoms, 385 bonds, 40 residues, 1 model selected  

> save C:/Users/Lenovo/Desktop/1.pdb models #1.1 relModel #1.1

> close

> open C:/Users/Lenovo/Desktop/1.pdb

Chain information for 1.pdb #1  
---  
Chain | Description  
A | No description available  
  

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/CLEANUP/EGF1-clean-
> CHIMERAX/FULL/1.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/CLEANUP/EGF1-clean-
CHIMERAX/FULL/1.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK Component boundaries: 0: 1 40  
  
Ignored bad PDB record found on line 5  
REMARK -0.396 -31.602 2.426 -2.870 -1.882 -54.858 -89.182  
  
Ignored bad PDB record found on line 6  
REMARK sOPEP Energy: -89.182  
  
Chain information for 1.pdb #2  
---  
Chain | Description  
A | No description available  
  

> matchmaker #1-2

Missing required "to" argument  

> matchmaker #1 to #2

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 1.pdb, chain A (#2) with 1.pdb, chain A (#1), sequence alignment
score = 193.8  
RMSD between 36 pruned atom pairs is 1.235 angstroms; (across all 40 pairs:
1.442)  
  

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #1 models

> show #1 models

> select add #2

586 atoms, 595 bonds, 40 residues, 1 model selected  

> close #2

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/CLEANUP/EGF1-clean-
> CHIMERAX/FULL/5.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/CLEANUP/EGF1-clean-
CHIMERAX/FULL/5.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK Component boundaries: 0: 1 40  
  
Ignored bad PDB record found on line 5  
REMARK -0.405 -41.709 12.759 -2.898 -2.288 -57.993 -92.533  
  
Ignored bad PDB record found on line 6  
REMARK sOPEP Energy: -92.5332  
  
Chain information for 5.pdb #2  
---  
Chain | Description  
A | No description available  
  

> matchmaker #1 to #2

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 5.pdb, chain A (#2) with 1.pdb, chain A (#1), sequence alignment
score = 172.2  
RMSD between 14 pruned atom pairs is 0.931 angstroms; (across all 40 pairs:
7.264)  
  

> select add #2

586 atoms, 595 bonds, 40 residues, 1 model selected  

> select subtract #2

Nothing selected  

> select add #2

586 atoms, 595 bonds, 40 residues, 1 model selected  

> close #2

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/CLEANUP/EGF1-clean-
> CHIMERAX/FULL/4.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/CLEANUP/EGF1-clean-
CHIMERAX/FULL/4.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK Component boundaries: 0: 1 40  
  
Ignored bad PDB record found on line 5  
REMARK -0.404 -21.400 4.644 -2.693 -0.534 -58.032 -78.419  
  
Ignored bad PDB record found on line 6  
REMARK sOPEP Energy: -78.419  
  
Chain information for 4.pdb #2  
---  
Chain | Description  
A | No description available  
  

> matchmaker #1 to #2

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 4.pdb, chain A (#2) with 1.pdb, chain A (#1), sequence alignment
score = 188.4  
RMSD between 10 pruned atom pairs is 1.250 angstroms; (across all 40 pairs:
10.255)  
  

> select add #2

586 atoms, 595 bonds, 40 residues, 1 model selected  

> close #2

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/CLEANUP/EGF1-clean-
> CHIMERAX/FULL/3.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/CLEANUP/EGF1-clean-
CHIMERAX/FULL/3.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK Component boundaries: 0: 1 40  
  
Ignored bad PDB record found on line 5  
REMARK -0.395 -22.084 5.806 -2.865 -2.258 -58.134 -79.929  
  
Ignored bad PDB record found on line 6  
REMARK sOPEP Energy: -79.9292  
  
Chain information for 3.pdb #2  
---  
Chain | Description  
A | No description available  
  

> matchmaker #1 to #2

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 3.pdb, chain A (#2) with 1.pdb, chain A (#1), sequence alignment
score = 190.5  
RMSD between 6 pruned atom pairs is 0.942 angstroms; (across all 40 pairs:
7.643)  
  

> select add #2

586 atoms, 595 bonds, 40 residues, 1 model selected  

> close #2

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/CLEANUP/EGF1-clean-
> CHIMERAX/FULL/2.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/CLEANUP/EGF1-clean-
CHIMERAX/FULL/2.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK Component boundaries: 0: 1 40  
  
Ignored bad PDB record found on line 5  
REMARK -0.457 -30.708 5.544 -3.204 -0.369 -52.748 -81.942  
  
Ignored bad PDB record found on line 6  
REMARK sOPEP Energy: -81.942  
  
Chain information for 2.pdb #2  
---  
Chain | Description  
A | No description available  
  

> matchmaker #1 to #2

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 2.pdb, chain A (#2) with 1.pdb, chain A (#1), sequence alignment
score = 160.2  
RMSD between 18 pruned atom pairs is 1.481 angstroms; (across all 40 pairs:
7.952)  
  

> select add #2

586 atoms, 595 bonds, 40 residues, 1 model selected  

> close #2

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/CLEANUP/EGF1-clean-
> CHIMERAX/FULL/1.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/CLEANUP/EGF1-clean-
CHIMERAX/FULL/1.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK Component boundaries: 0: 1 40  
  
Ignored bad PDB record found on line 5  
REMARK -0.396 -31.602 2.426 -2.870 -1.882 -54.858 -89.182  
  
Ignored bad PDB record found on line 6  
REMARK sOPEP Energy: -89.182  
  
Chain information for 1.pdb #2  
---  
Chain | Description  
A | No description available  
  

> matchmaker #1 to #2

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 1.pdb, chain A (#2) with 1.pdb, chain A (#1), sequence alignment
score = 193.8  
RMSD between 36 pruned atom pairs is 1.235 angstroms; (across all 40 pairs:
1.442)  
  

> close

> open "C:/Users/Lenovo/Desktop/New folder (2)/Balanced 19
> model/cluspro.1367777/model.000.00.pdb"

Summary of feedback from opening C:/Users/Lenovo/Desktop/New folder
(2)/Balanced 19 model/cluspro.1367777/model.000.00.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK original generated coordinate pdb file  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
371 messages similar to the above omitted  
  
Chain information for model.000.00.pdb #1  
---  
Chain | Description  
A | No description available  
C | No description available  
  
Computing secondary structure  

> split #1

Split model.000.00.pdb (#1) into 2 models  
Chain information for model.000.00.pdb A #1.1  
---  
Chain | Description  
A | No description available  
  
Chain information for model.000.00.pdb C #1.2  
---  
Chain | Description  
C | No description available  
  

> select #1.1/A:1-40

376 atoms, 385 bonds, 40 residues, 1 model selected  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.11.dev202509240054 (2025-09-24)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 555.99
OpenGL renderer: NVIDIA GeForce GTX 1650/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.9
Locale: en_US.cp1254
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: windows

Manufacturer: LENOVO
Model: 81LK
OS: Microsoft Windows 11 Home (Build 26200)
Memory: 17,044,721,664
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i5-9300H CPU @ 2.40GHz
OSLanguage: tr-TR

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    babel: 2.17.0
    beautifulsoup4: 4.13.5
    blockdiag: 3.0.0
    blosc2: 3.8.0
    build: 1.3.0
    certifi: 2025.8.3
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.3
    ChimeraX-AddCharge: 1.5.20
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 3.0.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.3.2
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.17
    ChimeraX-AtomicLibrary: 14.2
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.1
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.6.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3.0
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.11.dev202509240054
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.3
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.4
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.7.1
    ChimeraX-Label: 1.2
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.2
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.17.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-Minimize: 1.2
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.22
    ChimeraX-ModelPanel: 1.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0.1
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.15.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.11
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.5
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.4
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.5
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.2
    ChimeraX-Scenes: 0.2.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.2
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.48.3
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDock: 1.4.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.3
    comtypes: 1.4.11
    contourpy: 1.3.3
    coverage: 7.10.7
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.1.4
    debugpy: 1.8.17
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.1
    filelock: 3.19.1
    fonttools: 4.60.0
    funcparserlib: 2.0.0a0
    glfw: 2.10.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2025.4.15
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.30.1
    ipython: 9.5.0
    ipython_pygments_lexers: 1.1.1
    ipywidgets: 8.1.7
    jedi: 0.19.2
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.9
    line_profiler: 5.0.0
    lxml: 6.0.2
    lz4: 4.3.2
    Markdown: 3.8.2
    MarkupSafe: 3.0.2
    matplotlib: 3.10.5
    matplotlib-inline: 0.1.7
    msgpack: 1.1.1
    narwhals: 2.12.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.12.1
    numpy: 2.3.5
    numpy: 1.26.4
    nvidia-nvjitlink-cu12: 12.9.86
    OpenMM: 8.2.0
    OpenMM-CUDA-12: 8.2.0
    openvr: 1.26.701
    packaging: 25.0
    ParmEd: 4.2.2
    parso: 0.8.5
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 11.3.0
    pip: 25.2
    pkginfo: 1.12.1.2
    platformdirs: 4.4.0
    plotly: 6.3.1
    pluggy: 1.6.0
    prompt_toolkit: 3.0.52
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pybind11: 3.0.1
    pycollada: 0.8
    pydicom: 2.4.4
    Pygments: 2.18.0
    pyKVFinder: 0.8.3
    pynmrstar: 3.3.6
    pynrrd: 1.0.0
    PyOpenGL: 3.1.10
    PyOpenGL-accelerate: 3.1.10
    pyopenxr: 1.1.4501
    pyparsing: 3.2.5
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.9.1
    PyQt6-Qt6: 6.9.2
    PyQt6-WebEngine-commercial: 6.9.0
    PyQt6-WebEngine-Qt6: 6.9.2
    PyQt6_sip: 13.10.2
    pytest: 8.4.2
    pytest-cov: 7.0.0
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pywin32: 311
    pyzmq: 27.1.0
    qtconsole: 5.7.0
    QtPy: 2.4.3
    qtshim: 1.2
    RandomWords: 0.4.0
    requests: 2.32.5
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 80.9.0
    sfftk-rw: 0.8.1
    six: 1.17.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.8
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.2.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.6
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.5
    tomlkit: 0.13.3
    tornado: 6.5.2
    traitlets: 5.14.3
    typing_extensions: 4.15.0
    tzdata: 2025.2
    urllib3: 2.5.0
    wcwidth: 0.2.14
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 14 hours ago

Component:	Unassigned → UI
Owner:	set to Eric Pettersen
Platform:	→ all
Project:	→ ChimeraX
Status:	new → accepted
Summary:	ChimeraX bug report submission → Crash using open/save dialog

comment:2 by Eric Pettersen, 14 hours ago

Resolution:	→ can't reproduce
Status:	accepted → closed

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