![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Feb 28, 2019:
- 8:55 PM Ticket #1742 (volume onesmask: local variable 'varray' referenced before assignment) created by
- […]
- 4:34 PM Ticket #1739 (Make pseudobonds end on cartoons) closed by
- duplicate: Duplicate of #183; adding reporter and attachment to that ticket.
- 4:24 PM Ticket #1741 (Qt crash) created by
- […]
- 4:20 PM ChangeLog edited by
- (diff)
- 2:39 PM Ticket #1740 (need bundle argument to help) created by
- The help from a tool's context menu needs to start looking for the …
- 2:00 PM Ticket #1739 (Make pseudobonds end on cartoons) created by
- […] Screen Shot 2019-02-28 at 4.56.53 PM.png
- 1:12 PM Ticket #1738 (Increase surface-cap subdivision) created by
- […] Screen Shot 2019-02-28 at 4.11.12 PM.png
- 12:59 PM Ticket #1737 (Palette support in volumes and scale bars) created by
- […]
- 12:14 PM toolbar-unification edited by
- (diff)
- 11:43 AM toolbar-unification created by
- 11:22 AM DeveloperMeetings edited by
- (diff)
- 10:09 AM Ticket #1736 (Morph: No coordset id 1) created by
- […]
- 4:29 AM Ticket #1735 (AddH fails after residue deletion) created by
- […]
Feb 27, 2019:
- 6:09 PM Ticket #1734 (Volume compressed to single plane) closed by
- not a bug: The data looks relatively smooth and I think it would look much better …
- 5:31 PM Ticket #1733 (Sequence headers session-restore problem) closed by
- fixed: Hi Dustin, Thanks for reporting this problem. It is fixed now and …
- 3:53 PM Ticket #1734 (Volume compressed to single plane) created by
- […] movie.mp4
- 3:38 PM Ticket #1732 (Unexpected None data given to AtomicStructure.restore_snapshot()) closed by
- duplicate: Duplicate of #1660; adding reporter to that ticket
- 3:21 PM Ticket #1733 (Sequence headers session-restore problem) created by
- […]
- 2:08 PM Ticket #1720 (Preset manager) closed by
- fixed
- 1:37 PM Ticket #1732 (Unexpected None data given to AtomicStructure.restore_snapshot()) created by
- […] SecY.cxs
Feb 26, 2019:
Feb 25, 2019:
- 3:07 PM ChangeLog edited by
- (diff)
- 2:59 PM Ticket #1491 (bundleinfo.xml tag for compiling executables) closed by
- fixed
- 12:27 PM Ticket #1730 (self._positions is None) closed by
- duplicate: Fixed last week.
- 11:17 AM Ticket #1726 (Unexpected None data given to AtomicStructure.restore_snapshot()) closed by
- duplicate: Basically a duplicate of #1660
- 6:58 AM Ticket #1730 (self._positions is None) created by
- […]
- 3:00 AM Ticket #1729 (OpenGL buffer was not deleted before core.graphics.Buffer) created by
- […]
- 2:38 AM Ticket #1728 (AddH adds spurious hydrogens when called twice) created by
- Attached PDB of the residue (symmetric dimethylarginine, 2MR) for …
- 2:10 AM Ticket #1725 (UnicodeDecodeError installing ISOLDE) closed by
- duplicate: This is a known bug affecting ChimeraX 0.8 in Windows. Please see …
Feb 24, 2019:
- 9:02 AM Ticket #1727 (Startup: AttributeError: 'list' object has no attribute 'split') created by
- […]
Feb 23, 2019:
- 8:38 AM Ticket #1726 (Unexpected None data given to AtomicStructure.restore_snapshot()) created by
- […]
Feb 22, 2019:
- 10:24 AM Ticket #1724 (camera stereo: access violation in draw_elements) closed by
- duplicate: The stereo camera mode was not working about a month ago and I put in …
- 2:53 AM Ticket #1725 (UnicodeDecodeError installing ISOLDE) created by
- […]
- 1:25 AM Ticket #1724 (camera stereo: access violation in draw_elements) created by
- […]
Feb 21, 2019:
- 2:50 PM 2019-02-21 created by
- 2:14 PM DeveloperMeetings edited by
- (diff)
- 12:02 PM Ticket #1723 (Drop of .pyc file → source code string cannot contain null bytes) created by
- […]
- 11:03 AM Ticket #1722 (toolshed uninstall Toolbar → JSONDecodeError) created by
- […]
- 10:55 AM Ticket #1721 (Qt crash) closed by
- can't reproduce: Hi Aji, Unfortunately, the information from the traceback in the bug …
- 1:25 AM Ticket #1721 (Qt crash) created by
- […]
Feb 20, 2019:
- 4:41 PM Ticket #1717 (QResizeEvent can break graphics under some circumstances) closed by
- fixed: Fixed. Window resize causes error when ribbon changed since last …
- 4:39 PM Ticket #1718 (self._positions is None) closed by
- duplicate: Duplicate of #1717. Window resize causes error when ribbon changed …
- 3:34 PM Ticket #1720 (Preset manager) created by
- Preset manager that collates presets provided by bundles and can be …
- 3:28 PM Ticket #1685 (Core requirement mismatch) closed by
- not a bug
- 3:14 PM Ticket #1655 (Command history problems) closed by
- fixed: Well, mostly fixed. The ChimeraX command-search code had suffered …
- 2:13 PM Ticket #1719 ("inside" color for ribbons) created by
- Allow a different color for ribbon "inside"
- 7:40 AM Ticket #1718 (self._positions is None) created by
- […]
- 3:08 AM Ticket #1717 (QResizeEvent can break graphics under some circumstances) created by
- I've stumbled on a (very specific) combination of circumstances where …
Feb 19, 2019:
- 11:53 AM Ticket #1712 (Image save: Require contiguous 3x4 array) closed by
- can't reproduce: Bug in 0.8. Does not appear possible to have non-contiguous matrix in …
- 11:39 AM Ticket #1710 (Collada limitations and UnboundLocalError: local variable 's' ...) closed by
- fixed: Yes, your files are using features of OBJ and Collada that ChimeraX …
- 11:23 AM Ticket #1713 (getcrd: atom-string style not in option's list of values) closed by
- fixed: Updated to current value for that setting
- 10:51 AM Ticket #1709 (Qt crash) closed by
- can't reproduce: Hi Vikram, Thanks for reporting this problem. Unfortunately, the …
- 5:16 AM Ticket #1716 (Missing bond) created by
- […] link.png
- 4:04 AM Ticket #1715 (distutils finding wrong libpython) created by
- Ever since I installed a system-wide Python 3.7 on my workstation, …
- 3:16 AM Ticket #1714 (ChimeraX bug report submission) closed by
- duplicate: This is a known bug affecting ChimeraX 0.8 in Windows. You can find a …
Feb 18, 2019:
- 4:08 PM Ticket #1714 (ChimeraX bug report submission) created by
- […]
- 2:55 PM Ticket #1713 (getcrd: atom-string style not in option's list of values) created by
- […]
- 9:35 AM Ticket #1712 (Image save: Require contiguous 3x4 array) created by
- […]
Feb 15, 2019:
- 3:04 AM Ticket #1710 (Collada limitations and UnboundLocalError: local variable 's' ...) created by
- […]
- 1:13 AM Ticket #1709 (Qt crash) created by
- […]
Feb 14, 2019:
- 3:08 PM MSCContract edited by
- (diff)
- 3:01 PM WikiStart edited by
- (diff)
- 2:43 PM MSCContract edited by
- (diff)
- 2:32 PM MSCContract edited by
- (diff)
- 1:11 PM DeveloperMeetings edited by
- (diff)
- 12:18 PM MSCContract created by
- 12:08 PM HurtITK created by
- 11:37 AM Ticket #1708 (Qt crash) closed by
- can't reproduce
- 5:37 AM Ticket #1708 (Qt crash) created by
- […]
- 2:27 AM Ticket #1707 (Set atom types for residue based on dictionary) created by
- AddH is getting things wrong for the modified nucleobase 1MG in 6hrm …
Feb 13, 2019:
- 4:25 PM EricsSOW edited by
- (diff)
- 3:54 PM Ticket #1701 (Soft lighting bug after undisplayed opacity change) closed by
- fixed: Fixed. Add transparency tracking code to catch volume surface …
- 2:45 PM Ticket #1702 (Depth cue color sometimes mismatches background color) closed by
- fixed: Fixed. Depth cue color was not matching preference setting background.
- 2:35 PM EricsSOW edited by
- (diff)
- 2:34 PM EricsSOW edited by
- (diff)
- 2:31 PM EricsSOW edited by
- (diff)
- 2:29 PM EricsSOW created by
- 2:03 PM Ticket #1705 ("make build-from-scratch" fails) closed by
- fixed: Fixed by not guessing where ChimeraX.app is.
- 1:54 PM 2019-02-07 edited by
- (diff)
- 1:41 PM Ticket #1706 (make clean fails: missing subdirectory tut_gui) closed by
- fixed: tut_gui became tut_tool_html and tut_tool_qt
- 1:12 PM Ticket #1706 (make clean fails: missing subdirectory tut_gui) created by
- […]
- 1:01 PM Ticket #1705 ("make build-from-scratch" fails) created by
- […] build1.out
- 11:44 AM Ticket #1703 (Session save: No bundle information for ...) closed by
- duplicate: Duplicate of #1698
- 11:31 AM Ticket #1704 (Implement full selection cascade) created by
- Possibly including Tristan's suggestion of a glycosylation level (#1700)
- 11:15 AM Ticket #1699 (ISOLDE installation: UnicodeDecodeError) closed by
- duplicate: This is a known bug affecting ChimeraX 0.8. You can find instructions …
- 10:40 AM Ticket #1703 (Session save: No bundle information for ...) created by
- […]
- 8:45 AM Ticket #1702 (Depth cue color sometimes mismatches background color) created by
- […]
- 7:45 AM Ticket #1701 (Soft lighting bug after undisplayed opacity change) created by
- […] chimerax_lighting_bug.mov
- 6:04 AM Ticket #1700 (Selection "promotion" in glycans etc.) created by
- Referring to the selection manipulation behaviour using the keyboard …
Feb 12, 2019:
- 4:36 PM Ticket #1622 (Need a method to clear atom's anisotropic B-factors) closed by
- fixed: Okay, this works now for collections too. --Eric
- 4:17 PM Ticket #1699 (ISOLDE installation: UnicodeDecodeError) created by
- […]
- 3:46 PM Ticket #1687 (Bogus "incompatible matrix" error) closed by
- fixed: The temporary "domain sequences" that matchmaker was creating to do …
- 12:36 PM Ticket #1697 (Crash while copying text) closed by
- can't reproduce: HI Jozef, Thanks for getting back to me so quickly. This seems like …
- 11:11 AM Ticket #1693 (Session save: No bundle information for ...) closed by
- duplicate: duplicate of #1698
Feb 11, 2019:
- 11:46 PM Ticket #1698 (Session save: No bundle information for ...) created by
- […]
- 11:30 PM Ticket #1697 (Crash while copying text) created by
- […]
- 7:17 PM Ticket #1690 (couldn't restore recently saved session with DICOM data) closed by
- fixed: Fixed.
- 6:59 PM Ticket #1694 (error trying to use 3D projection mode with dicom CT + SEG models) closed by
- fixed: Fixed. 3d projection mode was not handling blending.
- 5:34 PM Ticket #1696 (Large multi-image ImageJ tiff file is incorrectly read in as a single plane) created by
- Begin forwarded message: From: Matthew Akamatsu Subject: Re: …
- 4:26 PM Ticket #1695 (Switching to stereo camera crashes) closed by
- fixed: Fixed. When OpenGL context was switched to stereo, VAO (vertex array …
- 3:01 PM vizvault_stereo edited by
- (diff)
- 2:58 PM vizvault_stereo edited by
- (diff)
- 2:56 PM vizvault_stereo edited by
- (diff)
- 2:55 PM vizvault_stereo created by
- 2:44 PM WikiStart edited by
- (diff)
- 2:43 PM WikiStart edited by
- (diff)
- 12:57 PM Ticket #1695 (Switching to stereo camera crashes) created by
- […]
- 11:51 AM Ticket #1694 (error trying to use 3D projection mode with dicom CT + SEG models) created by
- […] 4-24533-segs.zip
- 11:09 AM Ticket #1693 (Session save: No bundle information for ...) created by
- […]
- 11:03 AM Ticket #1691 (Silhouettes + model hiding → blank graphics window) closed by
- duplicate: This was fixed a month ago. We advise people to use the ChimeraX …
- 10:53 AM Ticket #1692 (Allow volume zone invert true when newMap false) created by
- Begin forwarded message: From: Alexis Rohou Subject: [chimerax-users] …
- 10:01 AM Ticket #1691 (Silhouettes + model hiding → blank graphics window) created by
- […] 190211_ChimeraX_bugreport_silhouetteTrue.jpg
- 9:24 AM Ticket #1690 (couldn't restore recently saved session with DICOM data) created by
- […] middle.cxs
- 2:20 AM Ticket #1689 (ChimeraX bug report submission) closed by
- duplicate: This is a known bug affecting ChimeraX 0.8. You can find instructions …
Feb 9, 2019:
Feb 8, 2019:
- 5:39 PM Ticket #1688 (Qt crash (resizing window?)) created by
- […]
- 1:13 PM Ticket #1687 (Bogus "incompatible matrix" error) created by
- […]
- 3:36 AM Ticket #1686 ('ChimeraX -m pip install mdtraj' causes GUI to repeatedly flash up) created by
- (unrelated: the installation fails because some of the source was …
Feb 7, 2019:
- 6:07 PM Ticket #1685 (Core requirement mismatch) created by
- […]
- 3:12 PM 2019-02-07 created by
- 2:04 PM DeveloperMeetings edited by
- (diff)
- 11:33 AM Ticket #1622 (Need a method to clear atom's anisotropic B-factors) reopened by
- 10:57 AM Ticket #1675 (ChimeraX MacOS does not launch) closed by
- nonchimerax: Google search results suggest that the problem arose with a Mojave …
- 6:12 AM Ticket #1684 (BZip2 missing in Linux daily builds) created by
- […] Probably because the CentOS 7 Singularity recipe is missing …
- 5:26 AM Ticket #1683 (Can't install OpenEye from pip) created by
- Installs fine in a regular Python 3.7 virtualenv, but if I attempt to …
Feb 6, 2019:
- 3:56 PM Ticket #1680 (Vseries save: No module named 'chimerax.core.commands.parse') closed by
- fixed: Fixed in tonight's builds. The vseries save command when given two or …
- 9:10 AM Ticket #1682 (Expose mmcif template functions to Python) created by
- The C++ code in bundles/mmcif/mmcif_cpp covers the job of pulling .cif …
- 12:24 AM Ticket #1680 (Vseries save: No module named 'chimerax.core.commands.parse') created by
- […]
Feb 5, 2019:
- 10:11 AM Ticket #1678 (ChimeraX bug report submission) closed by
- fixed: If you are not using ISOLDE, please try using a newer daily build of …
- 9:47 AM Ticket #1679 (symbol lookup error: /lib64/libgtk-3.so.0: undefined symbol: ...) closed by
- not a bug: Never mind - this was entirely my fault. I was running ChimeraX from a …
- 8:50 AM Ticket #1465 (KeyError saving mmCIF) closed by
- duplicate: Duplicate of #1548
- 7:10 AM Ticket #1679 (symbol lookup error: /lib64/libgtk-3.so.0: undefined symbol: ...) created by
- I just noticed using last week's nightly rpm build (in a CentOS 7 …
- 2:58 AM Ticket #1678 (ChimeraX bug report submission) created by
- […]
Feb 4, 2019:
- 3:32 PM Ticket #1677 (Logged commands are missing required quotation marks) closed by
- fixed: Fixed. This needs to be handled on a per-annotation basis, since …
- 2:19 PM Ticket #1677 (Logged commands are missing required quotation marks) created by
- […]
- 11:46 AM Ticket #1676 (Library linking failure after ISOLDE install) closed by
- duplicate: Duplicate of #1672
- 7:59 AM Ticket #1676 (Library linking failure after ISOLDE install) created by
- […]
- 4:25 AM Ticket #1675 (ChimeraX MacOS does not launch) created by
- […]
Feb 3, 2019:
- 4:40 PM Ticket #1548 (KeyError while writing mmCIF) closed by
- fixed: Bug was due to code that guessed the polymer sequence. The last …
Feb 2, 2019:
- 11:41 AM Ticket #1548 (KeyError while writing mmCIF) reopened by
- Fix broken other parts of ChimeraX.
Feb 1, 2019:
- 1:38 PM Ticket #1674 (mmCIF reading crash) closed by
- duplicate: Mistakenly clicked 'Submit' button
- 1:14 PM Ticket #1674 (mmCIF reading crash) created by
- […]
- 11:40 AM Ticket #1673 (Linux flavor ABI incompatibility) created by
- Relevant part of traceback below. The offending line in rota.cpp is …
- 11:29 AM Ticket #1668 (Unexpected None data given to NamedView.restore_snapshot()) closed by
- duplicate: Same underlying problem as #1660
- 5:41 AM Ticket #1672 (Library linking failure after ISOLDE install) created by
- […]
- 5:39 AM Ticket #1671 (Permission denied installing Clipper) created by
- […]
- 5:38 AM Ticket #1670 (about.html missing on Linux) created by
- […]
- 2:11 AM Ticket #1669 (Toolshed updating list of tools: 'list' object has no attribute 'split') created by
- […]
Jan 31, 2019:
- 6:16 PM Ticket #1548 (KeyError while writing mmCIF) closed by
- fixed: So this one is fixed. Out of curiosity, where are these NMR mmCIF …
- 5:46 PM 2019-01-31 edited by
- (diff)
- 3:02 PM 2019-01-31 edited by
- (diff)
- 2:52 PM 2019-01-31 created by
- 2:12 PM Ticket #1668 (Unexpected None data given to NamedView.restore_snapshot()) created by
- […]
- 2:07 PM DeveloperMeetings edited by
- (diff)
- 11:54 AM ChangeLog edited by
- (diff)
- 10:39 AM Ticket #1667 (Session-restore failure: KeyError: 'rotations') closed by
- fixed: Hi Shiwei, This problem was fixed on December 17th, so if you …
- 7:53 AM Ticket #1667 (Session-restore failure: KeyError: 'rotations') created by
- […]
Jan 30, 2019:
- 4:03 PM Ticket #1665 (Bundles from other builds being used) closed by
- duplicate: duplicate of #1642
- 4:02 PM Ticket #1664 (Bundles from other builds being used) closed by
- duplicate: duplicate of #1642
- 3:14 PM Ticket #1666 (bundle_info.xml DataFormat classifier needs allow_directory option) created by
- Need ChimeraXClassifier DataFormat allow_directory option …
- 2:32 PM Ticket #1665 (Bundles from other builds being used) created by
- […]
- 2:28 PM Ticket #1664 (Bundles from other builds being used) created by
- […]
Jan 29, 2019:
- 5:58 PM Ticket #1662 (DICOM key error bitsAllocated) closed by
- fixed: I made the DICOM reader warn about and ignore these dicom files it …
- 1:20 PM Ticket #1659 (Crash due to NULL sseq.structure pointer) closed by
- duplicate: Need session file to reproduce
- 12:10 PM Ticket #1663 (DICOM value error 50 times but 2 found) closed by
- fixed: When opening a partial time series (files present for only 2 of 50 …
- 11:24 AM Ticket #1663 (DICOM value error 50 times but 2 found) created by
- Narrowed down the mouse data to at least one example, attached as zip …
- 11:10 AM Ticket #1662 (DICOM key error bitsAllocated) created by
- Narrowed down the problem with the head/neck study. Within the …
- 9:41 AM Ticket #1661 (Support adding state managers from bundles) created by
- Session state managers are useful mechanisms that provide a …
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