Opened 7 years ago

Closed 7 years ago

#1727 closed defect (fixed)

Startup: AttributeError: 'list' object has no attribute 'split'

Reported by: Elaine Meng Owned by: Conrad Huang
Priority: normal Milestone:
Component: Tool Shed Version: 0.8
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.8 (2018-12-17)
Description
Toolshed problem prevents starting 0.8 with icon.  Starting from Terminal "works" but shows large traceback.

Log:
Startup Messages  
---  
note | Traceback (most recent call last):  
File  
"/Applications/ChimeraX-0.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-  
packages/chimerax/core/toolshed/__init__.py", line 338, in __init__  
self.init_available_from_cache(logger)  
File  
"/Applications/ChimeraX-0.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-  
packages/chimerax/core/toolshed/__init__.py", line 445, in  
init_available_from_cache  
abc.load_from_cache()  
File  
"/Applications/ChimeraX-0.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-  
packages/chimerax/core/toolshed/available.py", line 61, in load_from_cache  
b = _build_bundle(d)  
File  
"/Applications/ChimeraX-0.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-  
packages/chimerax/core/toolshed/available.py", line 242, in _build_bundle  
keywords = _extract_extra_keywords(keywords)  
File  
"/Applications/ChimeraX-0.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-  
packages/chimerax/core/toolshed/installed.py", line 270, in  
_extract_extra_keywords  
all_kwds = [k.strip() for k in kwds.split(',')]  
AttributeError: 'list' object has no attribute 'split'  
  

> open ~/Desktop/startup.cxc

> alias nucrib car style nucleic x oval width 1.6 thick 1.6

> alias cylinders car style protein modeh tube rad 2 sides 24

> alias licorice car style protein modeh default arrows f x oval width 1 thick
1

> alias rib1 car style modeh def arrows t wid 2 thick 0.4; car style
(nucleic|strand) x rect

> alias reset view orient; view initial

executed startup.cxc  
UCSF ChimeraX version: 0.8 (2018-12-17)  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 INTEL-10.36.23
OpenGL renderer: Intel Iris Pro OpenGL Engine
OpenGL vendor: Intel Inc.

Change History (2)

comment:1 by Eric Pettersen, 7 years ago

Component: UnassignedTool Shed
Owner: set to Conrad Huang
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionStartup: AttributeError: 'list' object has no attribute 'split'
Version: 0.8

comment:2 by Conrad Huang, 7 years ago

Resolution: fixed
Status: assignedclosed

Fixed by 9c80cac968. Daily builds after January 24, 2019 should have the fix.

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