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Timeline
May 17, 2018:
- 9:59 PM Ticket #752 (CIF/PDB I/O problems) closed by
- fixed: I'm going to consider this "fixed" for now. The sheets are still a …
- 4:24 PM Ticket #1112 (Execution problem) closed by
- nonchimerax: ChimeraX is only for 64-bit versions of Windows. Check which version …
- 1:11 PM Ticket #1120 (links in Log to help pages cannot be opened) closed by
- fixed: Fixed. Need to use help: URLs for commands instead file: URLs, so …
- 12:45 PM Ticket #1125 (Functionality 'nucleotides' not working) closed by
- fixed: Fixed. "New" Drawing.set_geometry() cleared vertex_colors, which the …
- 10:56 AM Ticket #1127 (Isolde installation error) closed by
- not a bug
- 10:53 AM Ticket #1128 (Proxy server support) created by
- Need to offer proxy-server support for toolshed and other facilities …
- 10:47 AM Ticket #1105 (ISOLDE run time error) closed by
- fixed: Thank for the info Vincent! It will be helpful if or when others run …
May 16, 2018:
- 11:48 PM Ticket #1117 ('help' produces 'usage' for many commands) closed by
- fixed: Fixed. Was broken by code for supporting documentation in bundles.
- 1:57 PM Ticket #1127 (Isolde installation error) created by
- […]
- 11:00 AM Ticket #1126 (Functionality 'nucleotides' not working) closed by
- duplicate: Apparent duplicate of #1125
- 5:36 AM Ticket #1126 (Functionality 'nucleotides' not working) created by
- […] [[Image(...)]]
- 4:44 AM Ticket #1125 (Functionality 'nucleotides' not working) created by
- […] [[Image(...)]]
- 2:03 AM Ticket #1124 (Remove bot traffic from Toolshed download stats?) created by
- The Toolshed download statistics page is a really cool tool that I …
May 15, 2018:
- 2:23 PM Ticket #1123 (PDB output not updating HELIX/SHEET) created by
- As per summary
- 1:52 PM Ticket #1122 (AddH adds spurious hydrogen to dangling 5' phosphate) created by
- Analogous to a dangling N-terminus, it's reasonably common to see …
- 1:24 PM Ticket #1121 (Erroneous bonding at RNA chain break in PDB 5an9) created by
- In the current daily build, residues N2700, N2925, and N2926 are all …
- 11:26 AM Ticket #1120 (links in Log to help pages cannot be opened) created by
- for example, open some structure, use command "info models", and then …
- 2:02 AM Ticket #1119 (Misleading pseudobond at RNA chain break in mmCIF 5an9) created by
- Opening 5an9, residues N2700 and N2925 (the 3' and 5' sides of a chain …
- 1:32 AM Ticket #1118 (deleting residues from a chain leads to erroneous PDB) created by
- If I open a PDB file, select some set of residues in the middle of a …
May 14, 2018:
- 5:08 PM Ticket #1117 ('help' produces 'usage' for many commands) created by
- help save/open/cartoon/dssp/... actually produces usage instead help …
May 11, 2018:
- 3:00 PM Ticket #1113 (Segmentation fault when opening new model while old model is being deleted) closed by
- fixed: Needed to directly destroy chains with no Python-layer refs to their …
May 10, 2018:
- 3:06 PM DeveloperMeetings edited by
- (diff)
- 3:05 PM 2018-05-10 created by
- 12:06 AM Ticket #1116 (RuntimeError: delayed command registration for 'measure motion' failed) closed by
- fixed: Fixed. Bad python imports after moving to map series bundle.
May 9, 2018:
- 3:57 PM Ticket #1116 (RuntimeError: delayed command registration for 'measure motion' failed) created by
- UCSF ChimeraX version: 0.7 (2018-05-09) open 2mnr surface molmap …
- 2:32 PM Ticket #1115 (H-bonds found between metal-ligating heteroatoms) created by
- Examples: 4hhb HEM in chains C and D 2mnr Mn-ligating oxygens
- 1:59 PM Ticket #1084 ("name delete all" gives traceback: 'is_selector_reserved' is not defined) closed by
- fixed: Ran a couple tests, "name delete all" seems to be working as advertised.
- 10:12 AM Ticket #1114 (Error when saving session) created by
- […]
May 8, 2018:
- 7:44 AM Ticket #1113 (Segmentation fault when opening new model while old model is being deleted) created by
- - open a large model that will take some non-trivial time to clean up …
May 7, 2018:
- 6:37 PM Ticket #1112 (Execution problem) created by
- […] According to Google Translate, the above translates to: "Good …
- 3:36 PM Ticket #1110 (open with wildcard not reusable in file history) closed by
- fixed: Fixed. Greg and I discussed this. The problem is the file history …
- 2:08 PM Ticket #1111 (VR meeting moving molecule moves other person's user interface pane) created by
- On May 7, 2018, at 12:28 PM, Nicolas Floquet …
- 1:31 PM Ticket #1109 (RuntimeError: delayed command registration for 'color electrostatic' ...) closed by
- fixed: Fixed
- 9:05 AM Ticket #1110 (open with wildcard not reusable in file history) created by
- If I used a wildcard in the open command, e.g. "open test*cxs" it …
- 8:28 AM Ticket #1109 (RuntimeError: delayed command registration for 'color electrostatic' ...) created by
- I had the following in a cxc file but opening the file gave a …
May 3, 2018:
- 5:19 PM Ticket #1072 (Document mmCIF output tables) closed by
- fixed
- 5:19 PM Ticket #581 (colornames that start with "pale" get confused with "palette") closed by
- fixed: Fixed by fixe to #969.
- 2:58 PM 2018-05-03 created by
- 2:06 PM DeveloperMeetings edited by
- (diff)
- 1:29 PM Ticket #1108 (error on save image when object clipped near and far) created by
- […] image3.png image4.png
May 2, 2018:
- 4:12 PM Ticket #1107 (quickstart tutorial has traceback) closed by
- fixed: Fixed. Removed volume surface_levels attribute yesterday but missed …
- 3:49 PM Ticket #1107 (quickstart tutorial has traceback) created by
- Doing the volume example, after executing: […] I get: […]
- 1:38 PM Ticket #1101 (3D Labels breaking session restore) closed by
- fixed: Fixed, for now.
- 1:30 PM Ticket #1106 (Dependencies on other bundle's include dirs) created by
- If a bundle declares a dependency on another bundle, then compiled …
- 5:35 AM Ticket #1105 (ISOLDE run time error) created by
- […]
May 1, 2018:
- 12:33 PM Ticket #1102 (chimerax.core.map.data.fileformats.File_Format_Error:) closed by
- nonchimerax: The ChimeraX error message means the MRC file header has completely …
- 12:20 PM Ticket #1104 (Installing ISOLDE gives traceback, needs user-friendly error message) created by
- Current ISOLDE 1.0b1 installed from Toolshed on macOS gives an …
- 11:18 AM Ticket #1103 (AddH fails after deleting atoms) closed by
- can't reproduce: It is probably a consequence of the import hook -- code that directly …
- 9:12 AM Ticket #1103 (AddH fails after deleting atoms) created by
- delete H addh hbond false leads to the below traceback: […]
- 5:23 AM Ticket #1102 (chimerax.core.map.data.fileformats.File_Format_Error:) created by
- […]
Apr 30, 2018:
- 8:34 PM Ticket #1100 (ToolShed fails on non-integer version numbers) closed by
- fixed: I changed the code to handle any number of dot-separated integers …
- 4:59 PM Ticket #1101 (3D Labels breaking session restore) reopened by
- 3:45 PM Ticket #1101 (3D Labels breaking session restore) closed by
- fixed: Works with my current developer build. Appears to be fixed. Get this …
- 2:26 PM Ticket #1101 (3D Labels breaking session restore) created by
- open 1gcn use right mouse mode to add a residue label save session …
- 12:20 PM ChangeLog edited by
- (diff)
- 5:48 AM Ticket #1100 (ToolShed fails on non-integer version numbers) created by
- I uploaded ISOLDE 1.0b1 (which should be valid according to …
- 3:54 AM Ticket #1099 (PyPI dependency fail on 'make app-install') created by
- Pulls successfully from the repo in Linux, but on the Mac: […] …
Apr 27, 2018:
- 3:59 PM 2018-04-26 edited by
- (diff)
- 10:48 AM Ticket #1098 (Aplique labels on helix tubes and ribbons) created by
- Would be cool to be able to paint residue numbers directly onto helix …
- 10:45 AM Ticket #1097 (Jupyter tab completion no longer working on some objects) closed by
- fixed: Weird, works in 0.5 and in 0.7 daily build, but not 0.6. I guess …
- 10:31 AM Ticket #1096 (Bug in c_array_property()) closed by
- fixed: Fixed. Ugh. Collections do an evil thing, when C++ objects are …
- 6:49 AM Ticket #1097 (Jupyter tab completion no longer working on some objects) created by
- Version 0.6 official release. e.g. […] No longer brings up the …
- 6:46 AM Ticket #1096 (Bug in c_array_property()) created by
- This is rather odd. Using the molc API, I have a class …
Apr 26, 2018:
- 2:37 PM 2018-04-26 created by
- 2:03 PM DeveloperMeetings edited by
- (diff)
- 1:59 PM Ticket #1035 (some docked dialogs persist in "full window" mode and block small ...) closed by
- fixed: Settings dialog now respects the 'hide docked windows' icon
Apr 25, 2018:
- 5:48 PM ChangeLog edited by
- (diff)
- 5:48 PM ChangeLog edited by
- (diff)
- 5:47 PM ChangeLog edited by
- (diff)
- 5:40 PM ChangeLog edited by
- (diff)
- 4:19 PM ChangeLog edited by
- (diff)
Apr 24, 2018:
- 4:07 PM Ticket #1095 (alias can cause duplicates in "usage" output) created by
- "usage del" reports "delete pbonds" twice, once as a direct …
- 2:22 PM Ticket #1094 (traceback closing all models aftering coloring by ESP) closed by
- fixed: Fixed. Code to delete drawings forgot to delete auto recoloring …
- 12:34 PM Ticket #1094 (traceback closing all models aftering coloring by ESP) created by
- version UCSF ChimeraX version: 0.7 (2018-04-21) I tried subsets of …
- 12:12 PM Ticket #1093 (Problem creating ribbon graphics) closed by
- fixed: Fixed in tonight's ChimeraX builds. Zero length array of spline atoms …
Apr 20, 2018:
Apr 19, 2018:
- 3:09 PM 2018-04-19 created by
- 2:04 PM DeveloperMeetings edited by
- (diff)
- 1:38 PM Ticket #1092 (rainbow broken) closed by
- fixed: Fixed. New color sequential subcommand forgot to handle case when no …
- 12:49 PM Ticket #1092 (rainbow broken) created by
- "rainbow" command (doesn't seem to matter what structure) gives …
- 4:30 AM Ticket #1091 ("View all" doesn't play well with "cofr center showpivot true") created by
- The pivot indicator is currently considered part of the scene when …
Apr 18, 2018:
- 5:43 PM Ticket #969 (Color subcommands for zone, map, etc.) closed by
- fixed: Done. Made color subcommands zone, sequential, electrostatic, sample, …
- 4:49 PM Ticket #1005 (Open File dialog gives lots of Debug output on Windows) closed by
- duplicate: Duplicate of #1042
- 4:47 PM Ticket #1049 (RE: VR ON bug in latest release) closed by
- duplicate: SteamVR bug, worked around it in ChimeraX a month ago.
- 4:46 PM Ticket #1048 (Re: VR ON bug in latest release) closed by
- duplicate: SteamVR bug, worked around it in ChimeraX a month ago.
- 4:46 PM Ticket #1047 (VR ON bug in latest release) closed by
- duplicate: SteamVR bug, worked around it in ChimeraX a month ago.
- 4:46 PM Ticket #1046 (VR ON bug in latest release) closed by
- duplicate: SteamVR bug, worked around it in ChimeraX a month ago.
- 4:45 PM Ticket #1040 (OpenGL version not recognized) closed by
- nonchimerax: Inadequate graphics provided by driver.
- 4:44 PM Ticket #1032 (attempting VR) closed by
- not a bug: No response. Assume split command is working now.
- 3:47 PM Ticket #1090 ("vr on": 'utf-8' codec can't decode byte: invalid continuation byte) closed by
- fixed: Fixed in tonight's builds. New SteamVR versions generate an benign …
- 9:30 AM Ticket #1090 ("vr on": 'utf-8' codec can't decode byte: invalid continuation byte) created by
- […]
- 7:21 AM Ticket #1089 (Option to recursively include contents of directory in bundle) created by
- Adding a copy of my Sphinx-generated documentation to the ISOLDE build …
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