#1092 closed defect (fixed)
rainbow broken
| Reported by: | Elaine Meng | Owned by: | Tom Goddard |
|---|---|---|---|
| Priority: | major | Milestone: | |
| Component: | Depiction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
"rainbow" command (doesn't seem to matter what structure) gives traceback. E.g.
open 2gbp
rainbow
Traceback (most recent call last):
File "/Users/meng/Desktop/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/cmd_line/tool.py", line 205, in execute
cmd.run(cmd_text)
File "/Users/meng/Desktop/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 2622, in run
result = ci.function(session, kw_args)
File "/Users/meng/Desktop/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/rainbow.py", line 20, in rainbow
level=level, palette=palette, undo_name="rainbow")
File "/Users/meng/Desktop/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/color.py", line 907, in color_sequential
f(session, objects, palette, opacity, target, undo_state)
File "/Users/meng/Desktop/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/color.py", line 370, in _set_sequential_residue
for structure, chain_id, atoms in selected.atoms.by_chain:
AttributeError: 'NoneType' object has no attribute 'atoms'
AttributeError: 'NoneType' object has no attribute 'atoms'
File "/Users/meng/Desktop/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/color.py", line 370, in _set_sequential_residue
for structure, chain_id, atoms in selected.atoms.by_chain:
See log for complete Python traceback.
version
UCSF ChimeraX version: 0.7 (2018-04-19)
Change History (2)
comment:1 by , 8 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
follow-up: 2 comment:2 by , 8 years ago
Oops. I tested “rainbow #1” yesterday and it worked. But I see with no model spec it gives an error. Will fix it today.
Fixed.
New color sequential subcommand forgot to handle case when no objects specified.