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Timeline
Mar 27, 2017:
Mar 24, 2017:
- 12:11 PM Ticket #597 (sometimes windowsize doesn't work and contents go gray) created by
- By "don't work" I mean the graphics window area does not become the …
- 12:07 PM Ticket #596 (sometimes silhouettes still shown after structures closed) created by
- Not reproducible although I have encountered it at least twice. …
- 11:38 AM Ticket #595 (Slow rendering of small 7000 atom atomic model, 2bbv) created by
- Rendering 2bbv with full lighting is surprisingly slow (11 frames per …
Mar 23, 2017:
- 6:02 PM Ticket #594 (converting mmcif structure to Python object runs out of memory) created by
- Opening copy_1_ccp4.cif (and others) from #284 give the following …
- 5:48 PM Ticket #584 (Opening 1gbp gives error setting entity descriptions) closed by
- fixed: Tweak code that handles missing entity_poly_seq to work when …
- 5:16 PM Ticket #374 (Help viewer in Qt version does not show movie) closed by
- fixed: Added OGG and WEBM codecs to ffmpeg on Linux and Mac OS X. This …
- 5:11 PM Ticket #579 (Support for tools extending 'save' command) closed by
- fixed: Already in place with ChimeraX :: Save metadata.
- 3:01 PM 2017-03-23 created by
- 2:15 PM DeveloperMeetings edited by
- (diff)
Mar 21, 2017:
- 7:03 PM Ticket #591 (traceback saving session with orthographic camera) closed by
- fixed: Fixed. Doesn't give an error now. But session code does not know how …
- 7:01 PM Ticket #593 (Save orthographic camera settings in session) created by
- Currently ortho camera is not saved in sessions. Restoring such a …
- 6:11 PM Ticket #592 (Image save 2x smaller region on Mac OS 10.9.5) created by
- The following email from Camille McAvoy suggests that ChimeraX is not …
- 4:11 PM Ticket #591 (traceback saving session with orthographic camera) created by
- If I try to save a session after "camera ortho" I get no file saved …
- 2:48 PM Ticket #590 (Increase size of window resize handles) created by
- At present attempting to resize windows by dragging edges or corners …
- 2:19 PM Ticket #589 (cartoon short-strand orientations unstable over trajectory) created by
- Obvserved during morphing but I don't think the source of the …
- 1:32 PM Ticket #588 (unstable tube orientation in morph) created by
- When I play back the morph in attached session with coordset #3 1,21 …
- 11:08 AM Ticket #587 (Chimera1/X matchmaker difference) created by
- The attached structures get much higher sequence alignment scores in …
Mar 20, 2017:
- 4:19 PM Ticket #583 (Morph atoms don't move if alt locs are present) closed by
- fixed: Fixed; implemented a 'dealtloc' structure method that morph calls …
- 1:49 PM Ticket #586 (Bonds between symmetry partners) created by
- The "sym" command should establish bonds between symmetry partners …
- 12:05 PM Ticket #585 (RFE: add cartoon-style helix tube radius option) created by
- I recommend adding an option to “cartoon style” to allow specifying a …
Mar 17, 2017:
- 6:58 PM Ticket #584 (Opening 1gbp gives error setting entity descriptions) created by
- open 1gbp Traceback (most recent call last): File …
- 6:22 PM Ticket #583 (Morph atoms don't move if alt locs are present) created by
- open 2fw0 open 2hph mm #2 to #1 morph #1,2 show #3 coordset #3 1,21 …
Mar 16, 2017:
Mar 15, 2017:
- 2:23 PM Ticket #582 (Log panel does not scroll, Mac) created by
- After command "debug test" which puts 20 pages of out put in the log, …
Mar 14, 2017:
- 11:05 AM Ticket #581 (colornames that start with "pale" get confused with "palette") created by
- Colornames that start with "pale" get mixed up with the "palette" …
- 10:49 AM Ticket #580 ("rungs hide" traceback if scope broader than original "rungs" command) closed by
- fixed: Fixed.
- 10:20 AM Ticket #580 ("rungs hide" traceback if scope broader than original "rungs" command) created by
- ... at least that's my guess, since if I use the same atomspec (or …
Mar 13, 2017:
- 1:54 PM Ticket #236 (Saving a session with an unknown model type gives an error) closed by
- fixed: It no longer throws a RuntimeError, instead it logs a warning and …
- 1:50 PM Ticket #458 (ChimeraX fetched data deleted by Mac OS upgrade) closed by
- fixed: The fetched data location was moved ton ~/Downloads/Chimerax/
Mar 9, 2017:
- 5:31 PM Ticket #579 (Support for tools extending 'save' command) created by
- Analogous to 'open' command
- 3:16 PM 2017-03-09 edited by
- (diff)
- 2:34 PM 2017-03-09 created by
- 2:07 PM DeveloperMeetings edited by
- (diff)
- 2:05 PM FAI edited by
- (diff)
- 1:28 PM Ticket #578 (Toolshed "download stats" links do nothing in ChimeraX browser) created by
- Since they're flash, they probably can't be made to work directly, but …
- 12:54 PM Ticket #568 (Exceptions crash console in Windows build) closed by
- fixed: It _is_ fixed by Python 3.6
Mar 8, 2017:
Mar 7, 2017:
- 4:11 PM Ticket #576 (Use SSBOND records) created by
- As per Tristan: "Phenix does not write out CONECT records for …
Mar 6, 2017:
- 7:15 PM Ticket #575 (Status line message causes OpenGL error) created by
- The following commands result in an OpenGL error caused by the status …
- 4:06 PM Ticket #567 (Add logger to bundle API for registering things) closed by
- fixed: Added logger argument to register_command and register_selector …
- 3:26 PM Ticket #574 (cofr problem after matchmaker) closed by
- fixed: Fixed a few days ago, but I guess we have not had a working daily …
- 3:24 PM Ticket #574 (cofr problem after matchmaker) created by
- open 2gbp open 2fw0 mm #2 to #1 ...OK so far, but traceback when …
- 2:58 PM Ticket #573 (add ribbon "surface" capping) created by
- After adding the clip_cap attribute to ribbons (two separate "= …
- 2:49 PM Ticket #572 (Failed dependency in last night's Linux build) created by
- […]
Mar 5, 2017:
- 11:06 AM Ticket #562 (Update to Python 3.6 and PyQt 5.8) closed by
- fixed: Merged into develop branch.
Mar 2, 2017:
- 9:46 PM Ticket #571 (Save volume global settings in sessions) created by
- On Mar 2, 2017, at 2:27 PM, Elaine Meng <> wrote: Hi Tom, Are these …
- 5:15 PM Ticket #526 (Spurious extra quotes in logged command) closed by
- fixed: Fixed.
- 2:41 PM Ticket #570 (command "open formats" broken) closed by
- fixed: Fixed.
- 12:45 PM Ticket #570 (command "open formats" broken) created by
- open formats Traceback (most recent call last): File …
- 11:47 AM Ticket #569 (Show selected atoms under transparent surface) created by
- Current selection outline code does not associate a depth with the …
- 10:02 AM Ticket #568 (Exceptions crash console in Windows build) created by
- […]
Mar 1, 2017:
- 11:33 PM Ticket #567 (Add logger to bundle API for registering things) created by
- The bundle API prevents logging errors when registering commands, file …
- 11:29 PM Ticket #546 (generalize 'help http:....' to 'open http:...') closed by
- fixed: Done.
- 4:22 PM Ticket #541 ("help URL" doesn't work with https URL) closed by
- fixed: Works.
- 1:27 PM Ticket #378 (Atom spec parsing stops at non-whitespace) closed by
- fixed: The "save" command usage was already changed to put the filename …
- 11:52 AM Ticket #565 ("sym" copy new model changes cartoon from original) closed by
- fixed
- 11:28 AM Ticket #558 (opening session closes help viewer) closed by
- fixed: Fixed in a0010e9.
Feb 28, 2017:
- 4:50 PM Ticket #566 (drag select weirdness) closed by
- fixed: Fixed. Drag select was not taking account of positions of moved models.
- 3:40 PM Ticket #566 (drag select weirdness) created by
- In the attached session, the selected strand has an unselected strand …
- 11:13 AM Ticket #565 ("sym" copy new model changes cartoon from original) created by
- Basically 2 helices that are adjacent but shown as separate helices in …
Feb 27, 2017:
- 6:01 PM Ticket #529 (ChimeraX runs out of memory opening 2a06) closed by
- fixed: Missing backbone nitrogen between residues 20 and 21 on chains B and O …
- 1:55 PM 2017-02-27 edited by
- (diff)
- 1:51 PM 2017-02-27 edited by
- (diff)
- 11:54 AM 2017-02-27 created by
- 11:21 AM DeveloperMeetings edited by
- (diff)
- 10:26 AM Ticket #417 (Help viewer suggestions) closed by
- fixed: Yay! So much nicer, thanks. I'll close this as fixed since the …
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