Timeline
Sep 28, 2016:
- 2:31 PM Ticket #438 (PDBFixer doesn't add correct atoms) created by
- PDBFixer on 5jqf incorrectly adds a fourth hydrogen H to the first …
- 1:24 PM Ticket #437 (OpenMM hangs and uses all system memory, tug atom mouse mode) created by
- Using the tug mouse mode on Mac OS 10.11 and 10.12 frequently at the …
Sep 26, 2016:
- 11:41 AM Ticket #434 ("ts refresh" gives traceback mentioning ihm) closed by
- fixed: This error actually comes from better error checking of the bundle API …
Sep 23, 2016:
- 4:46 PM Ticket #436 (Tool setup.py cannot register multiple extensions for file format) created by
- FASTA and several other sequence formats have no "standard" file …
Sep 22, 2016:
- 4:47 PM Ticket #435 (strand command-line selector broken) closed by
- fixed: Fixed. Conrad missed the 'strand' and 'coil' selectors when he …
- 4:40 PM Ticket #435 (strand command-line selector broken) created by
- trying to use atomspec "strand" gives error (e.g. "sel strand") …
- 4:32 PM 2016-09-22 edited by
- (diff)
- 4:30 PM DeveloperMeetings edited by
- (diff)
- 4:09 PM 2016-09-22 created by
Sep 20, 2016:
- 2:52 PM Ticket #434 ("ts refresh" gives traceback mentioning ihm) created by
- UCSF ChimeraX version: 0.1 (2016-09-16) toolshed refresh Traceback …
- 2:35 PM Ticket #432 (capping residue ACE considered ligand, not surfaced) closed by
- fixed: Capping groups now included in polymer chain.
- 10:23 AM Ticket #433 (consider PISA fetch for assemblies and/or interface statistics) created by
- Forming URLs to retrieve data from PDBePISA: …
Sep 19, 2016:
- 4:16 PM 2016-08-29 edited by
- (diff)
- 3:32 PM Ticket #432 (capping residue ACE considered ligand, not surfaced) created by
- Example is both chains in 1hzx. Probably the same issue with NME …
- 2:54 PM 2016-09-19 created by
- 1:56 PM DeveloperMeetings edited by
- (diff)
Sep 16, 2016:
- 12:48 PM Ticket #431 (Error opening PDB with blank chain id) closed by
- fixed
- 12:32 PM Ticket #431 (Error opening PDB with blank chain id) created by
- open input_nowater.pdb Summary of problems opening input_nowater.pdb: …
- 11:54 AM Ticket #425 (saving session changes ACE residue from chain A to chain B) closed by
- fixed: The multi-atom deletion code wasn't updating chains as residues got deleted
Sep 15, 2016:
- 5:33 PM Ticket #430 (buriedarea and sasa should exclude ions, solvent, ligands) created by
- Should the buriedarea and sasa (solvent accessible surface area) …
- 5:24 PM Ticket #429 (matchmaker doesn't recognize tRNA as Nucleic?) closed by
- fixed: Fixed. The wrapping for the C++ function that converts 3-character …
- 5:23 PM Ticket #428 (buriedarea "select" should clear previous selection) closed by
- fixed: Ok, I made the buriedarea command "select" option replace the selection.
- 4:07 PM 2016-09-15 created by
- 2:09 PM FAI edited by
- (diff)
- 2:07 PM DeveloperMeetings edited by
- (diff)
- 12:43 PM Ticket #429 (matchmaker doesn't recognize tRNA as Nucleic?) created by
- open 2tra open 4tra mm #1 to #2 matrix Nucleic ... gives error …
- 12:16 PM Ticket #428 (buriedarea "select" should clear previous selection) created by
- Using the "select" option of "buriedarea" with gradually increasing …
Sep 13, 2016:
- 12:26 AM Ticket #426 (Drag selection is selecting more than atoms in rectangle) closed by
- fixed: Fixed. Planar bounds of selection frustum were assuming perspective …
Sep 12, 2016:
- 2:03 PM Ticket #422 (Fails to start on Mac with spaces in install path) closed by
- wontfix: It's actually the comma that causes this error. Whitespace in the …
- 1:16 PM Ticket #427 (Add multitouch trackpad rotation and translation) created by
- Begin forwarded message: From: Oliver Clarke Subject: Re: show/hide …
- 1:14 PM Ticket #426 (Drag selection is selecting more than atoms in rectangle) created by
- This may be only on retina display. Begin forwarded message: From: …
Sep 10, 2016:
- 7:40 AM Ticket #425 (saving session changes ACE residue from chain A to chain B) created by
- I opened 1hzx, deleted chain B, focused on :ace. Mousing over it …
Sep 9, 2016:
- 1:45 PM Ticket #424 (mmCIF chain names) created by
- Need the pdbx_poly_seq_scheme records extruded into the structure …
- 11:17 AM Ticket #423 (Shell error messages at startup) created by
- Starting Sept 9, 2016 ChimeraX daily build from a terminal spews …
- 10:59 AM Ticket #422 (Fails to start on Mac with spaces in install path) created by
- If there is a space in the path to the ChimeraX install location or in …
Sep 8, 2016:
- 5:17 PM Ticket #421 (align not producing same result as Chimera 1) closed by
- worksforme: Eric reports that the problem is that the mmcif and pdb format …
- 5:01 PM Ticket #421 (align not producing same result as Chimera 1) created by
- If you open 1b17 and 1ben (in that order) and then use this command: …
- 4:30 PM Ticket #396 (cannot show Side View) closed by
- fixed: Sideview has been ported to Qt, so it is effectively bug-for-bug …
- 3:01 PM Ticket #184 (seg vault deleting atoms) closed by
- worksforme: Lost test program :-( But haven't had any problems recently.
- 2:57 PM Ticket #109 (Wx defects on Linux) closed by
- wontfix: We're not using wx anymore.
- 2:56 PM Ticket #366 (incomplete logging from multi-command cxcmd links) closed by
- fixed: Not sure when this was fixed, but it works now.
- 10:40 AM Ticket #420 (Human readable atom specifiers) created by
- Tristan suggests allowing human-readable atom specifiers. The user …
Sep 6, 2016:
- 2:24 PM Ticket #419 (Read MTZ files, compute and display real-space density) created by
- Begin forwarded message: From: Airlie McCoy <> Subject: Re: …
- 11:53 AM Ticket #418 (problems with help command new-viewer option) created by
- Would be better to change the “help” option “new_viewer” to avoid …
- 11:38 AM Ticket #417 (Help viewer suggestions) created by
- In addition to bugs #370 and #374, here are some things that could …
- 11:30 AM Ticket #416 (Interactively extend xray maps to zone around atom.) created by
- Begin forwarded message: From: Airlie McCoy Subject: [chimera-dev] …
Sep 1, 2016:
- 3:58 PM 2016-09-01 edited by
- (diff)
- 2:50 PM 2016-09-01 created by
- 2:17 PM FAI edited by
- (diff)
- 2:14 PM 2016-08-29 edited by
- (diff)
- 2:07 PM DeveloperMeetings edited by
- (diff)
- 1:38 PM 2016-08-29 edited by
- (diff)
- 1:37 PM 2016-08-29 created by
- 1:00 PM DeveloperMeetings edited by
- (diff)
Aug 31, 2016:
- 11:01 AM Ticket #415 (Model panel expands all hierarchy when models opened/closed) created by
- Model panel "expands all" when models opened/closed. Have it remember …
Aug 30, 2016:
- 7:04 PM Ticket #414 (PDB 5c1m: cannot find consistent set of bond orders) created by
- open 5c1m Summary of problems opening 5c1m fetched from pdb: …
Aug 29, 2016:
- 3:47 PM Ticket #413 (ChimeraX Help menu on Mac includes Search but misleading) created by
- On Mac, the ChimeraX Help menu includes a "Search" that apparently …
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