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Timeline
Nov 12, 2015:
- 3:42 PM WikiStart edited by
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- 3:09 PM DeveloperMeetings edited by
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- 3:07 PM DeveloperMeetings edited by
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- 3:07 PM 2015-11-12 created by
Nov 10, 2015:
- 3:56 PM Ticket #103 (Atomspec specifying one model in hierarchy) closed by
- fixed: Conrad's fixed atomspec parsing worked correctly. It was another bug …
- 12:09 PM Ticket #181 ("color byhet" dies on molecular surface) closed by
- fixed: Fixed. Error happened when coloring a surface per-atom using some but …
- 11:51 AM Ticket #103 (Atomspec specifying one model in hierarchy) reopened by
- I'm afraid this is not fixed. For example, open 4hhb surf ligand …
- 10:22 AM Needed Command Functionality edited by
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- 10:18 AM Ticket #181 ("color byhet" dies on molecular surface) created by
- For example, open 1gcn disp color byhet (OK so far....) surf color …
Nov 9, 2015:
- 7:31 PM WikiStart edited by
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- 7:30 PM WikiStart edited by
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- 7:27 PM WikiStart edited by
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- 7:27 PM WikiStart edited by
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- 7:26 PM WikiStart edited by
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- 4:39 PM Needed Command Functionality edited by
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Nov 6, 2015:
- 3:20 PM Needed Command Functionality edited by
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- 3:08 PM Needed Command Functionality edited by
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- 3:01 PM Needed Command Functionality edited by
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- 1:51 PM Needed Command Functionality edited by
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- 1:49 PM Needed Command Functionality edited by
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- 12:57 PM Needed Command Functionality edited by
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- 11:13 AM Ticket #179 (cartoon hides too many atoms of nucleic acids) closed by
- fixed: Okay, with the revamped is_backbone functionality, Chimera 2 hides the …
- 10:02 AM Ticket #180 (Side View eye position does not move with drag) created by
- Currently, dragging the square in the Side View tool does not move the …
Nov 5, 2015:
- 5:14 PM 2015-11-05 edited by
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- 4:51 PM DeveloperMeetings edited by
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- 4:51 PM 2015-11-05 created by
- 9:39 AM Needed Command Functionality edited by
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- 8:44 AM Needed Command Functionality edited by
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Nov 4, 2015:
- 12:11 PM WikiStart edited by
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- 11:24 AM Needed Command Functionality edited by
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- 11:21 AM Needed Command Functionality edited by
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Nov 3, 2015:
- 3:45 PM Ticket #135 (Main window does not have focus on start-up) closed by
- fixed: Apparently I mistakenly closed #138 when I meant to close this. Fixed …
- 3:07 PM Ticket #179 (cartoon hides too many atoms of nucleic acids) created by
- Maybe the default behavior of cartoon should be to not hide any atoms …
- 1:43 PM Ticket #178 (Error selecting an atom with the mouse) closed by
- fixed
- 1:38 PM Needed Command Functionality edited by
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- 1:25 PM Needed Command Functionality edited by
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- 12:39 PM Ticket #138 (Command-line does not receive ctrl-A, ctrl-E ... when graphics pane ...) reopened by
- This bug has returned.
- 12:36 PM Needed Command Functionality edited by
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- 12:19 PM Ticket #178 (Error selecting an atom with the mouse) created by
- Traceback (most recent call last): File …
- 11:32 AM Needed Command Functionality edited by
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- 11:31 AM Needed Command Functionality edited by
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- 10:18 AM Ticket #177 (Ribbon end-cap shows striped marks) created by
- The ribbon end-cap of 1a0m chain A, residue 2 shows striped marks as …
Nov 2, 2015:
- 12:44 PM Ticket #176 (Make silhouette edges fade with depth) created by
- Begin forwarded message: From: Oliver Clarke Subject: [Chimera-users] …
Oct 30, 2015:
- 5:13 PM Ticket #175 (2x slower opening 3j3q) created by
- Timing opening 3j3q.cif (2.4 million atoms) until it is displayed now …
- 4:55 PM Ticket #174 (Chimera starts with no tools) created by
- About half the time Chimera starts with just a black graphics area and …
Oct 29, 2015:
- 3:34 PM DeveloperMeetings edited by
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- 3:34 PM 2015-10-29 created by
- 11:39 AM Ticket #173 (command case comparison needs to be more sophisticated) created by
- Downcasing what the user types for keyword matching is problematic in …
- 11:21 AM Ticket #171 (built-in alias delayed registration failed) closed by
- fixed: Not sure when this was fixed, probably when internal alias function …
Oct 28, 2015:
- 9:28 PM Ticket #136 (Deleting atoms does not update ribbon) closed by
- fixed: Fixed by [develop ab70efd]. Set the "ribbon changed" state for …
- 4:10 PM Ticket #172 (specifying surface model wrongly specifies its enclosed atoms) created by
- When I have atomic model #1 and its surfaces for chains A-D are models …
Oct 27, 2015:
- 3:51 PM Ticket #118 (Render images in nogui mode) closed by
- fixed: Working on Linux using OSMesa (off-screen mesa) with LLVM driver.
- 3:50 PM Ticket #158 ("list" command broken, gives traceback) closed by
- fixed: Fixed some weeks ago.
- 10:35 AM Ticket #171 (built-in alias delayed registration failed) created by
- In today's daily build, trying to use "ribbon" or "ts" (or using …
Oct 26, 2015:
- 6:39 PM EarlyReleaseRequirements edited by
- (diff)
- 2:37 PM Ticket #103 (Atomspec specifying one model in hierarchy) closed by
- fixed: Code was too smart for itself. If there are no submodels, the code …
Oct 23, 2015:
- 10:53 AM Ticket #170 (PyOpenGL exception when exiting in nogui mode) closed by
- fixed: Fixed. Code was trying to delete the default framebuffer (0) when exiting.
- 10:51 AM Needed Command Functionality edited by
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- 10:46 AM Needed Command Functionality edited by
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Oct 22, 2015:
- 5:42 PM Ticket #168 (poor detection of lowest unused model ID number) closed by
- fixed: Fixed. Assigned lowest unused model id (or submodel id) to new models.
- 5:30 PM Ticket #170 (PyOpenGL exception when exiting in nogui mode) created by
- […]
- 3:27 PM DeveloperMeetings edited by
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- 3:27 PM 2015-10-22 created by
- 1:56 PM Ticket #169 (deleting chain doesn't delete its cartoon) closed by
- fixed: Fixed in [ab70efd]. When a residue (in a chain) is deleted, mark the …
- 11:34 AM Ticket #169 (deleting chain doesn't delete its cartoon) created by
- For example: open 1zik cartoon delete /b ... although you can make …
- 11:06 AM Ticket #168 (poor detection of lowest unused model ID number) created by
- If you close everything, model ID numbers start over at 1, but …
Oct 21, 2015:
- 5:58 PM Ticket #167 (volume color option rgba(r,g,b,a) does not work) created by
- The volume color option gives volume #1 color rgba(.5,0,0,.5) > …
Oct 20, 2015:
- 1:08 PM Ticket #165 (depending on order of commands, ribbon hides ALL peptide atoms) closed by
- fixed: Fixed in [b50d1ad]. Atom hide bits were being updated even for …
- 11:54 AM Ticket #166 (Side view display for orthographic camera) created by
- I added an orthographic projection camera ("camera ortho") and the …
- 11:46 AM Ticket #164 (misdirected or broken pick-select when I've translated the model ...) closed by
- fixed: Fixed. Picking code for molecules was ignoring the motion. So it …
- 11:20 AM Ticket #163 (trouble making second molmap) closed by
- fixed: Fixed. Was caused by comparing two arrays of unequal length. This …
- 11:15 AM Ticket #165 (depending on order of commands, ribbon hides ALL peptide atoms) created by
- open 1gcn cartoon ~disp ~cartoon cartoon disp ... now NO atoms are …
- 10:44 AM Ticket #164 (misdirected or broken pick-select when I've translated the model ...) created by
- I opened 1gcn twice and then translated only one copy (by selecting …
- 10:34 AM Ticket #163 (trouble making second molmap) created by
- I get a traceback with molmap but it depends on context whether a …
Oct 19, 2015:
- 4:54 PM Ticket #162 (Command history dialog always shown on startup) closed by
- fixed: Fixed.
- 11:56 AM EarlyReleaseRequirements edited by
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- 11:53 AM EarlyReleaseRequirements edited by
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- 11:52 AM EarlyReleaseRequirements edited by
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- 11:46 AM Ticket #162 (Command history dialog always shown on startup) created by
- The command history dialog is always shown on startup under the main …
Oct 16, 2015:
- 6:14 PM Ticket #161 (Ribbon normals are weird, 1a0m chain B) created by
- Ribbon normals are weird in the helix in chain B of 1a0m, with a …
Oct 15, 2015:
Oct 14, 2015:
- 10:50 PM Ticket #160 (echo doesn't echo everything) closed by
- fixed: Fixed in 17b25bc5438c938091622d6ee8c3d06f15d62abe. echo may still …
- 6:18 PM EarlyReleaseRequirements edited by
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- 6:12 PM EarlyReleaseRequirements edited by
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- 6:11 PM EarlyReleaseRequirements edited by
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- 3:46 PM Ticket #159 (more sophisticated history filtering) closed by
- fixed: Implemented.
- 3:20 PM Ticket #160 (echo doesn't echo everything) created by
- The echo command mostly works, but if you type "echo ---" you get a …
- 10:28 AM Ticket #156 (cannot display CA-only with ribbon) closed by
- fixed: Atom visibility update code only took into account ribbon …
- 10:12 AM Ticket #155 (~cartoon doesn't always unhide backbone) closed by
- fixed: Atom visibility was not updated when the ribbon is undisplayed for all …
Oct 13, 2015:
- 5:02 PM Ticket #159 (more sophisticated history filtering) created by
- I have one suggestion for a slight tweak… at the moment, scrolling up …
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