![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Mar 23, 2020:
- 6:10 PM Ticket #2973 (Numpy type problem reading .cmap file) closed by
- fixed: Fixed. Chimera map files containing symmetries as float32 (as written …
- 4:10 PM Ticket #2971 (Crash drawing Qt interface) closed by
- can't reproduce
- 4:08 PM Ticket #2973 (Numpy type problem reading .cmap file) created by
- […]
- 3:16 PM Ticket #2972 (Weird problem reading Amber CMAP terms) created by
- […]
- 2:15 PM Ticket #2971 (Crash drawing Qt interface) created by
- […]
- 11:07 AM Ticket #2969 (addh: metal-clash proton stripping) closed by
- fixed: The added-hydrogen-to-metal distance of 2.955 for Cys B77 is beginning …
- 9:04 AM Ticket #2970 (opening mmCIF but saving PDB loses "seqres" info) created by
- Example structure 6vxx. This information is preserved after opening …
- 8:49 AM Ticket #2968 (Crash drawing Qt interface) closed by
- duplicate: Same as #2966
- 8:48 AM Ticket #2967 (Crash drawing Qt interface) closed by
- duplicate: Same as #2966
- 1:15 AM Ticket #2969 (addh: metal-clash proton stripping) created by
- […]
Mar 21, 2020:
- 7:02 PM Ticket #2968 (Crash drawing Qt interface) created by
- […]
- 6:32 PM Ticket #2967 (Crash drawing Qt interface) created by
- […]
- 6:23 PM Ticket #2966 (Crash drawing Qt interface) created by
- […]
Mar 20, 2020:
- 8:50 AM Ticket #2962 (Crash drawing Qt interface) closed by
- can't reproduce
- 3:17 AM Ticket #2965 (Clipper: 'XmapHandler_Live' object has no attribute 'set_display_style') created by
- […]
Mar 19, 2020:
- 4:30 PM Ticket #2964 (Command-history change wipes command-entry text) created by
- […]
- 4:04 PM Ticket #2963 (Open dialog mishandles symbolic links) created by
- […]
- 2:23 PM Ticket #2962 (Crash drawing Qt interface) created by
- […]
- 8:48 AM Ticket #2960 (CrashReporter can't access ~/Library/Logs/DiagnosticReports) closed by
- duplicate: Duplicate of #2959
Mar 18, 2020:
- 2:24 PM Ticket #2961 (Tips for remote use) created by
- With the current rapidly-evolving situation, there's suddenly a whole …
- 11:27 AM Ticket #2959 (CrashReporter can't access ~/Library/Logs/DiagnosticReports) closed by
- can't reproduce: This is on macOS Catalina where you have to allow access to Downloads, …
- 10:37 AM Ticket #2960 (CrashReporter can't access ~/Library/Logs/DiagnosticReports) created by
- […]
- 8:55 AM Ticket #2957 (have Blast Protein report resolution) closed by
- fixed: it's documented, at least: …
- 8:37 AM Ticket #2958 (Crash in Qt on exit) closed by
- can't reproduce
- 7:12 AM Ticket #2959 (CrashReporter can't access ~/Library/Logs/DiagnosticReports) created by
- […]
- 4:47 AM Ticket #2958 (Crash in Qt on exit) created by
- […]
- 1:43 AM Ticket #2957 (have Blast Protein report resolution) created by
- […]
Mar 17, 2020:
Mar 16, 2020:
- 5:22 PM Ticket #2955 (Nucleotides trying to save closed structure) created by
- […]
- 12:21 PM Ticket #2926 (Adding coord sets) closed by
- not a bug: Ok, so it was just a misunderstanding how ChimeraX handles coordinate …
- 9:53 AM Ticket #2953 (Unwriteable settings) closed by
- can't reproduce
Mar 14, 2020:
- 6:39 PM Ticket #2954 (Crash drawing Qt interface) created by
- […]
- 2:10 AM Ticket #2953 (Unwriteable settings) created by
- […]
Mar 13, 2020:
- 2:14 PM Ticket #2919 ("sequence chain" fails after chain lengthened) closed by
- fixed
- 12:03 PM Ticket #2952 (Eventual failure in glDrawBuffer) closed by
- duplicate
- 11:14 AM Ticket #2951 (Adding coord sets) closed by
- duplicate: FYI. replying to a mail generated from the original ticket should get …
- 7:33 AM Ticket #2952 (Eventual failure in glDrawBuffer) created by
- […]
Mar 12, 2020:
- 11:16 AM Ticket #2951 (Adding coord sets) created by
- […]
- 11:09 AM Ticket #2941 (Chromium backend crash?) closed by
- can't reproduce: Hi Arun, Thanks for getting back to us with the info. It seems like …
- 10:52 AM Ticket #2949 ("sequence chain" fails after chain lengthened) closed by
- duplicate
- 10:51 AM Ticket #2948 ("sequence chain" fails after chain lengthened) closed by
- duplicate: Hi Yaikhomba, I see this is essentially the same problem you reported …
- 10:42 AM Ticket #2947 (Crash drawing Qt interface) closed by
- duplicate
- 10:26 AM Ticket #2950 (Could not create pixmap from [icon] png) created by
- […]
- 9:15 AM Ticket #2949 ("sequence chain" fails after chain lengthened) created by
- […] Screenshot from 2020-03-12 14-49-03.png
- 9:13 AM Ticket #2948 ("sequence chain" fails after chain lengthened) created by
- […] Screenshot from 2020-03-12 16-07-20.png
- 8:22 AM Ticket #2947 (Crash drawing Qt interface) created by
- […]
Mar 11, 2020:
- 7:31 PM Ticket #2945 (Crash opening 6bb5 on Windows) closed by
- fixed: Fixed. New code that produce a numpy array from a C++ vector<int64_t> …
- 6:32 PM Ticket #2946 (Debug option --debug not working on Windows.) created by
- […]
- 6:27 PM Ticket #2945 (Crash opening 6bb5 on Windows) created by
- […]
- 11:05 AM Ticket #2942 (Problem with Molecular Dynamics Viewer) closed by
- nonchimerax: Probably opened a PDB file without MODEL/ENDMDL records or other problems
- 10:49 AM Ticket #2944 (Include build_tools into chimerax git repository) created by
- The separate build_tools git repository that makes our daily builds …
- 10:42 AM Ticket #2943 (Put daily build test output in a separate file) created by
- Would like the daily build test output to go to a separate file with a …
- 2:42 AM Ticket #2942 (Problem with Molecular Dynamics Viewer) created by
- […]
- 2:34 AM Ticket #2941 (Chromium backend crash?) created by
- […]
Mar 10, 2020:
- 6:51 PM Ticket #2937 (Segmentation fault in Point_List::bounding_box() for large models (?)) closed by
- fixed: Fixed. I made find_close_points() handle large map sizes using 64-bit …
- 3:05 PM Ticket #2940 (subclassable AtomicStructure) closed by
- fixed: Hi Ben, I have added the set_state_from_snapshot support to …
- 11:40 AM Ticket #2845 (VR hand controllers swapped, Oculus Rift S) closed by
- fixed: Fixed. The controller role is not assigned correctly when waking. I …
- 8:41 AM Ticket #2850 (_openmm could not be found) closed by
- duplicate: Duplicate of #2771.
- 8:40 AM Ticket #2879 (openmm/swig: type object 'object' has no attribute '__getattr__') closed by
- fixed: Bug is fixed in more recent builds. Just for reference: the traceback …
- 8:36 AM Ticket #2884 (OpenMM: Error initializing context: clGetDeviceIDs) closed by
- fixed: I'll close this as fixed - it won't truly be until OpenMM 7.5 is …
- 4:42 AM Ticket #2875 (ISOLDE imports obsolete MainToolWindow from core.ui) closed by
- fixed: Fixed. Will be in the next build (an "official" ISOLDE release to go …
Mar 9, 2020:
- 5:06 PM Ticket #2940 (subclassable AtomicStructure) created by
- […]
- 4:50 PM ChangeLog edited by
- (diff)
- 4:13 PM ChangeLog edited by
- (diff)
- 4:07 PM Ticket #2939 (Iconify main window does not iconify other windows) created by
- […]
- 3:58 PM Ticket #2930 ("preframe" off by 1 during recorded morph) closed by
- not a bug: The problem is that you are doing two things at each frame, you …
- 3:44 PM ChangeLog edited by
- (diff)
- 2:58 PM Ticket #2928 (Pure translation morph not correct) closed by
- fixed: Fixed. The corkscrew motion done by morph to handle a model rotation …
- 1:14 PM Ticket #2904 (apt-get install failed for ubuntu 19.10) closed by
- worksforme: The package dependencies are reasonable.
- 12:41 PM Ticket #2938 (command to re-show chain table) created by
- Would be really useful to add a command to re-show the chain table …
- 12:13 PM Ticket #2085 (Crash in Qt in Mac graphics driver) reopened by
- This crash was not eliminated by the June 24, 2019 code change to …
- 11:26 AM Ticket #2931 (Built in method to profile trigger firings) closed by
- fixed: Have added the code from your diff. There are various C++ things that …
- 11:02 AM Ticket #2934 (Adding coord sets) reopened by
- Coordinate sets behave in a somewhat unexpected way when you add and …
- 10:43 AM Ticket #2934 (Adding coord sets) closed by
- duplicate: Follow up to #2926
- 10:33 AM Ticket #2924 (Attempt to link markers in different models) closed by
- fixed: Made better error message with no traceback. Markers could be …
- 6:42 AM Ticket #2937 (Segmentation fault in Point_List::bounding_box() for large models (?)) created by
- I've been seeing a quite intermittent segmentation fault lately when …
- 4:29 AM Ticket #2931 (Built in method to profile trigger firings) reopened by
- Just attached a diff with an extra method exposing it to the …
Mar 7, 2020:
- 4:17 PM Ticket #2936 (MemoryError saving session) created by
- […]
- 5:32 AM Ticket #2935 (Crash drawing Qt interface) created by
- […]
Mar 7, 2020:
- 5:10 PM ChangeLog edited by
- (diff)
- 12:12 PM Milestone 0.92 completed
- Dependency updates, including * Python 3.7.6 (no OpenMM for 3.8) * QT …
- 6:44 AM Ticket #2934 (Adding coord sets) created by
- […]
Mar 6, 2020:
- 1:51 PM Ticket #2931 (Built in method to profile trigger firings) closed by
- fixed: This change seems useful. I have applied it and it will be in the …
- 11:29 AM Ticket #2925 (Bizarre handling of save-image dispatching) closed by
- can't reproduce: Presumably this will become moot with the open/save reimplementation. …
- 10:50 AM Ticket #2921 (Crash in QtWebEngineCore) closed by
- can't reproduce
- 9:10 AM Ticket #2933 (Window management UI suggestions) created by
- […]
- 8:42 AM Ticket #2932 (View transition "jumpy") created by
- […]
- 8:37 AM Ticket #2931 (Built in method to profile trigger firings) created by
- I'm once again doing some profiling (trying to work out why adding an …
- 7:26 AM Ticket #2930 ("preframe" off by 1 during recorded morph) created by
- […] test3.mov
- 7:23 AM Ticket #2929 (ChimeraX header files not present in CentOS RPM) created by
- Trying to build Clipper against today's daily build (CentOS): […] …
- 7:18 AM Ticket #2928 (Pure translation morph not correct) created by
- […]
- 5:47 AM Ticket #2927 (Docked widgets not redrawn) created by
- This has happened in my presence twice now. The first time was in my …
Mar 5, 2020:
- 8:53 PM Ticket #2926 (Adding coord sets) created by
- […] coordsets.cxs
- 7:52 PM Ticket #2925 (Bizarre handling of save-image dispatching) created by
- […]
- 7:27 PM Ticket #2924 (Attempt to link markers in different models) created by
- […]
- 6:04 PM Ticket #2890 (Font startup cost) closed by
- fixed: No longer get the font warning with Qt 5.12. It appears to be a …
- 5:59 PM Ticket #2922 (OpenGL buffer not deleted) closed by
- fixed: Fixed. Sequence panel status bar did not release opengl resources …
- 5:34 PM Ticket #2907 (Chimera Modeller Issue) closed by
- not a bug
- 5:26 PM Ticket #2912 (Crash updating shader state (changing surface color)) closed by
- can't reproduce: This crashed in the Qt window toolkit trying to redraw its windows. …
- 5:09 PM Ticket #2923 (better initial sequence viewer size) created by
- May need to use the ugly setMinimumHeight() trick that …
- 5:02 PM Ticket #2922 (OpenGL buffer not deleted) created by
- open 2hyy # Show sequence panel by log click # Use context menu in seq …
- 4:32 PM Ticket #2921 (Crash in QtWebEngineCore) created by
- […]
- 3:28 PM Ticket #2920 (distances GUI needs better update-notification mechanism) created by
- Closing a structure with a distance monitor does not clear out the …
- 11:31 AM Ticket #2916 (mlp won't color pre-existing surface enclosing more than one chain) closed by
- fixed: Fixed. I added an option "surfaces" to the mlp command to specify …
Mar 4, 2020:
- 4:43 PM Ticket #2914 ("color bynucleotide" changes unrelated colors) closed by
- fixed: Fixed.
- 4:14 PM Ticket #2887 (No daily build for Generic Linux 64-bit) closed by
- fixed: It's been fixed for several days now. Can you tell me which version …
- 3:40 PM Ticket #2870 (ChimeraX Help Viewer (browser) behaving strangely) closed by
- fixed
- 10:47 AM Ticket #2918 (Blast Protein failure + Attempted instantiation of HeaderSequence ...) closed by
- duplicate
- 6:49 AM Ticket #2919 ("sequence chain" fails after chain lengthened) created by
- […] 89422800_196038681466979_538118797567983616_n.jpg
- 3:12 AM Ticket #2918 (Blast Protein failure + Attempted instantiation of HeaderSequence ...) created by
- […]
Mar 3, 2020:
- 11:32 PM Ticket #2917 (BlaST web service: No alias or index file found for protein database) created by
- […]
- 2:36 PM Ticket #2916 (mlp won't color pre-existing surface enclosing more than one chain) created by
- If I make a surface enclosing both chains A and B and then run mlp, it …
- 1:39 PM Ticket #2915 (cannot save plain text file from Help Viewer) created by
- ... or at least I can't figure out how to do it. I am trying to …
- 1:32 PM Ticket #2914 ("color bynucleotide" changes unrelated colors) created by
- […]
- 1:22 PM Ticket #2913 (Full sequence info not copied into split chains) created by
- Need to expose set_input_seq_info() to Python and use it in the …
- 12:10 PM Ticket #2912 (Crash updating shader state (changing surface color)) created by
- […]
- 11:25 AM Ticket #2911 (Problem restoring clip planes from session) closed by
- fixed: Fixed. Very old ChimeraX (May 2019) could apparently restore sessions …
- 7:52 AM Ticket #2911 (Problem restoring clip planes from session) created by
- […]
Mar 2, 2020:
- 7:24 PM Ticket #2909 (ChimeraX bug report submission) closed by
- fixed: Fixed. VR panels list was not cleared when VR turned off.
- 6:59 PM Ticket #2910 (ChimeraX bug report submission) closed by
- duplicate: Duplicate of #2909
- 6:13 PM Ticket #2910 (ChimeraX bug report submission) created by
- […]
- 6:13 PM Ticket #2909 (ChimeraX bug report submission) created by
- […]
- 3:10 PM Ticket #2908 (Nucleotides slow) created by
- […]
- 2:29 PM Ticket #2079 (Manager/provider for open/save dialog format options) closed by
- duplicate: Now subsumed by #2806
- 12:10 PM Ticket #2907 (Chimera Modeller Issue) created by
- […]
- 11:05 AM Ticket #2902 (Saved image is 1/4) closed by
- duplicate: This 1/4 image problem was a Mac driver issue. I think we added some …
- 11:02 AM Ticket #2903 (Requset of withdrawing the bug reporter log) closed by
- fixed: I deleted the log from from your bug report #2902.
- 10:54 AM Ticket #2901 (Crash in drawing (interface?) after opening PDB) closed by
- duplicate: duplicate of #2900
- 6:56 AM Ticket #2906 (Building OpenMM installer in devtoolset-7) created by
- I've just compiled working OpenMM 7.5 installer in devtoolset-7, …
- 3:28 AM Ticket #2905 (OpenMM: Multiple matching templates found for residue) created by
- […]
Mar 1, 2020:
Feb 29, 2020:
- 8:43 PM Ticket #2903 (Requset of withdrawing the bug reporter log) created by
- […]
- 7:47 PM Ticket #2902 (Saved image is 1/4) created by
- […]
- 6:21 PM Ticket #2901 (Crash in drawing (interface?) after opening PDB) created by
- […]
- 6:05 PM Ticket #2900 (Crash in drawing (interface?) after opening PDB) created by
- […]
Feb 28, 2020:
- 10:16 PM Ticket #2880 (GCC 7.3 breaks ISOLDE) closed by
- fixed
- 3:37 PM Ticket #2899 (Accidental submission) closed by
- duplicate
- 3:36 PM Ticket #2898 (Shell does not start) closed by
- duplicate: I don't think you were in fact working from a complete rebuild (or …
- 2:02 PM Ticket #2895 (Crash during close) closed by
- fixed: Prevent firing of delayed Sequence triggers if no one is listening to …
- 1:06 PM Ticket #2899 (Accidental submission) created by
- […]
- 11:20 AM Ticket #2891 (Sequence viewer: 'OptionalRGBAOption' object has no attribute 'get') closed by
- duplicate
- 11:20 AM Ticket #2891 (Sequence viewer: 'OptionalRGBAOption' object has no attribute 'get') reopened by
- 11:17 AM Ticket #2891 (Sequence viewer: 'OptionalRGBAOption' object has no attribute 'get') closed by
- duplicate
- 10:13 AM Ticket #2894 (Errors when typing commands after conference close) closed by
- fixed: Fixed in d87ae6ba9. Forgot to turn off command relay when …
Feb 27, 2020:
- 11:08 PM Ticket #2898 (Shell does not start) created by
- […]
- 6:33 PM Ticket #2897 (Closing Side View opens empty dialog/window) created by
- […]
- 5:31 PM Ticket #2896 (generic attribute selection slow) created by
- […]
- 5:26 PM Ticket #2895 (Crash during close) created by
- […]
- 5:16 PM Ticket #2783 (Disconnecting already-disconnected tooltip slot when click outside ...) closed by
- fixed: This apparently "fixed itself" with later versions of the packages …
- 4:52 PM Ticket #2894 (Errors when typing commands after conference close) created by
- […]
- 4:51 PM Ticket #2893 (conference does not send models to participants) created by
- […]
- 4:49 PM Ticket #2892 (conference does not send models to participant) created by
- […]
- 2:03 PM Ticket #2891 (Sequence viewer: 'OptionalRGBAOption' object has no attribute 'get') created by
- […]
- 12:52 PM Ticket #2889 (Crash drawing Qt interface) closed by
- duplicate: duplicate of #2888
- 11:00 AM ChangeLog edited by
- (diff)
Feb 26, 2020:
- 8:22 PM Ticket #2886 (error showing image map colored by index-map segmentation) closed by
- fixed: Fixed. Segmentation coloring on a map which was never shown in image …
- 6:42 PM Ticket #2890 (Font startup cost) created by
- […]
- 5:14 PM Ticket #2889 (Crash drawing Qt interface) created by
- […]
- 4:51 PM Ticket #2888 (Crash drawing Qt interface) created by
- […]
- 4:42 PM Ticket #2887 (No daily build for Generic Linux 64-bit) created by
- […]
- 11:22 AM Ticket #2886 (error showing image map colored by index-map segmentation) created by
- […]
- 11:13 AM Ticket #2885 (2D arrows not restored from old sessions) closed by
- fixed
- 10:38 AM Ticket #2881 (Shell does not start) closed by
- fixed: Fixed in 6d8525e5c. Added jupyter-client 5.3.4 as …
- 10:28 AM Ticket #2885 (2D arrows not restored from old sessions) created by
- […] arrows.cxs
Feb 25, 2020:
- 8:09 PM Ticket #2884 (OpenMM: Error initializing context: clGetDeviceIDs) created by
- […]
- 5:08 PM Ticket #2882 (Update download page to say macOS 10.13 is required) closed by
- fixed: Changes on the preview site. Will be on main site tomorrow.
- 4:54 PM Ticket #2883 ("seg colors" command traceback if specifying surface model with map keyword) closed by
- fixed: Fixed. The segmentation colors command was trying to give an error …
- 4:15 PM Ticket #2883 ("seg colors" command traceback if specifying surface model with map keyword) created by
- […]
- 1:07 PM Ticket #2867 (Error finding files in same folder as session file (previously: Error ...) closed by
- fixed: If you eventually are able to reproduce the session restore error …
- 1:05 PM Ticket #2882 (Update download page to say macOS 10.13 is required) created by
- Download page needs update, says macOS 10.12 is required when in fact …
- 11:43 AM ChangeLog edited by
- (diff)
- 11:42 AM ChangeLog edited by
- (diff)
Feb 24, 2020:
- 11:51 PM Ticket #2881 (Shell does not start) created by
- […]
- 11:50 PM Ticket #2880 (GCC 7.3 breaks ISOLDE) created by
- […]
- 6:22 PM Ticket #2879 (openmm/swig: type object 'object' has no attribute '__getattr__') created by
- […]
- 1:57 PM Ticket #2868 (Trac browse source unusably slow) closed by
- fixed
- 10:52 AM Ticket #2878 (Crash in free_keys_object/subtype_dealloc) closed by
- can't reproduce
Feb 23, 2020:
- 12:50 PM Ticket #2878 (Crash in free_keys_object/subtype_dealloc) created by
- […]
- 11:32 AM Ticket #2869 (incorrect undo of roll specific model) closed by
- fixed: Fixed in 49f498967. Make multi-frame turns use the same …
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