Problem with Molecular Dynamics Viewer

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Darwin-19.0.0-x86_64-i386-64bit
ChimeraX Version: 0.92 (2020-03-08)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.92 (2020-03-08)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/sethmartinez/Desktop/PRJ/P/MOLECULAR/EMUSLSIONS/experiments/cyclodex-
> model/notebooks/simulations/simulation.pdb

Downloading bundle MolecularDynamicsViewer-1.1-py3-none-any.whl  
Successfully installed MolecularDynamicsViewer-1.1  
Installed MolecularDynamicsViewer (1.1)  

> toolshed show "Molecular Dynamics Viewer"

Please register the custom scheme 'kmd' via
QWebEngineUrlScheme::registerScheme() before installing the custom scheme
handler.  

Traceback (most recent call last):  
File
"/Applications/ChimeraX-0.92.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/gui.py", line 610, in customEvent  
func(*args, **kw)  
File "/Users/sethmartinez/Library/Application Support/ChimeraX/0.92/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 57, in handle_scheme  
self.openFile()  
File "/Users/sethmartinez/Library/Application Support/ChimeraX/0.92/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 227, in openFile  
self.atomStruct.atoms.coords = self.atomLocation[0]  
File
"/Applications/ChimeraX-0.92.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/molc.py", line 218, in set_prop  
va[:] = values  
ValueError: could not broadcast input array from shape (0) into shape (0,3)  
  
ValueError: could not broadcast input array from shape (0) into shape (0,3)  
  
File
"/Applications/ChimeraX-0.92.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/molc.py", line 218, in set_prop  
va[:] = values  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-0.92.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/gui.py", line 610, in customEvent  
func(*args, **kw)  
File "/Users/sethmartinez/Library/Application Support/ChimeraX/0.92/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 57, in handle_scheme  
self.openFile()  
File "/Users/sethmartinez/Library/Application Support/ChimeraX/0.92/site-
packages/com/kdiller/dynamics/viewer/gui.py", line 227, in openFile  
self.atomStruct.atoms.coords = self.atomLocation[0]  
File
"/Applications/ChimeraX-0.92.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/molc.py", line 218, in set_prop  
va[:] = values  
ValueError: could not broadcast input array from shape (0) into shape (0,3)  
  
ValueError: could not broadcast input array from shape (0) into shape (0,3)  
  
File
"/Applications/ChimeraX-0.92.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/molc.py", line 218, in set_prop  
va[:] = values  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-14.2.16
OpenGL renderer: Intel HD Graphics 5000 OpenGL Engine
OpenGL vendor: Intel Inc.

[Eric Pettersen]

Probably opened a PDB file without MODEL/ENDMDL records or other problems