Timeline



Feb 4, 2017:

9:50 PM Ticket #513 (2dlabels "all" specifier stopped working) closed by Greg Couch
fixed: Fixed. 'all' can not be abbreviated.
9:00 PM Ticket #418 (problems with help command new-viewer option) closed by Greg Couch
fixed: Removed new_viewer
5:48 PM Ticket #374 (Help viewer in Qt version does not show movie) closed by Greg Couch
fixed: The problem is that the Qt viewer does not support h264 videos due to …

Feb 3, 2017:

4:25 PM Ticket #504 (Changing the .selected attribute of Drawing objects doesn't propagate ...) closed by Tom Goddard
not a bug: A few of the selection APIs are hard to find. …
4:19 PM Ticket #540 (Make file fetch give progress messages in status bar) closed by Tom Goddard
fixed: Done.
4:19 PM Ticket #511 (Report mmCIF assemblies in log when mmCIF opened) closed by Tom Goddard
fixed: Done.

Feb 2, 2017:

6:32 PM Ticket #540 (Make file fetch give progress messages in status bar) created by Tom Goddard
Currently fetching files (all types) gives no progress messages. It …
5:55 PM Ticket #407 (Update status line during long computations) closed by Tom Goddard
fixed: I put in code to work around the Qt bug described in the previous …
3:41 PM FAI edited by Elaine Meng
(diff)
3:39 PM 2017-01-09 edited by Elaine Meng
(diff)
2:31 PM Ticket #175 (2x slower opening 3j3q) closed by Tom Goddard
fixed: Current times to open 3j3q on my iMac (Mac OS 10.12.2) are 9.9 seconds …
2:14 PM Ticket #175 (2x slower opening 3j3q) reopened by Tom Ferrin
Been 6 months since our last timings done. Need to re-run "time open …
1:51 PM Ticket #539 (Corrupted log window) created by Tom Goddard
After running the following commands by hand in the command-line the …
1:09 PM Ticket #494 (Dropping one floating window into another and then tearing it away ...) closed by Greg Couch
fixed: This bug appears to be fixed with Qt 5.7.1.
12:27 PM Ticket #538 ("split ligands" doesn't work) closed by Tom Goddard
fixed: Fixed. The split command was added long ago before there was ligand …
10:19 AM Ticket #538 ("split ligands" doesn't work) created by Elaine Meng
I tried "split ligands" on 2gbp (1 glucose ligand) and 4hhb (4 heme …

Feb 1, 2017:

9:17 PM Ticket #537 (Re: application does not work) created by mikgelfer@…
[…]
6:24 PM Ticket #536 ("split atoms atomspec" gives traceback) closed by Tom Goddard
fixed: Fixed. Also made split accept multiple atoms options.
4:47 PM Ticket #536 ("split atoms atomspec" gives traceback) created by Elaine Meng
I was originally testing whether the "atoms" keyword could be given …
10:24 AM Ticket #69 (Atom spec parsing does not preserve model or chain order) closed by Conrad Huang
fixed: Fixed in dd03a06c8.

Jan 31, 2017:

4:02 PM GraphicsAPI edited by Tom Ferrin
(diff)
3:21 PM Ticket #535 (Mouse hover balloons don't show if ribbon selected) closed by Tom Goddard
fixed: Fixed. After selecting a ribbon residue the scene was redrawn every …
11:08 AM Ticket #535 (Mouse hover balloons don't show if ribbon selected) created by Tom Goddard
If any part of a ribbon is selected, the hovering mouse over atoms or …

Jan 30, 2017:

7:40 PM Ticket #412 (Fails to start on Mac with comma in app name) closed by pett
fixed
4:16 PM Ticket #512 (4adx won't open) closed by pett
fixed: Not an infinite loop, but close! Problem was in the handling of …
3:56 PM Ticket #534 (Full toolshed semantics) created by Conrad Huang
Make toolshed commands to update bundles work properly. Shorten bundle …
3:54 PM Ticket #533 (Hydrogen bond finder) created by Conrad Huang
Subject says it all
3:53 PM Ticket #532 (Saving and restoring sessions) created by Conrad Huang
Separate session version identification from reading session content.
3:52 PM Ticket #531 (Sequences and alignments) created by Conrad Huang
Structure-sequence cross talk. Session save/restore for MAV component. …
2:00 PM DeveloperMeetings edited by Tom Ferrin
(diff)
1:17 PM Ticket #500 (Allow selecting through holes in mesh surface) closed by Tom Ferrin
duplicate: See #503.
1:15 PM Ticket #496 (Toolshed does not indicate if tool was successfully installed) closed by Tom Ferrin
fixed: Message is now displayed in reply log.
12:35 PM 2016-11-14 edited by Tom Ferrin
(diff)
12:21 PM DeveloperMeetings edited by Tom Ferrin
(diff)
11:46 AM FAI edited by Conrad Huang
(diff)
11:15 AM WikiStart edited by Tom Ferrin
(diff)

Jan 28, 2017:

2:32 AM Ticket #530 (ChimeraX failed to load libEGL) created by v.arinkin@…
[…]

Jan 26, 2017:

5:53 PM Ticket #529 (ChimeraX runs out of memory opening 2a06) created by Greg Couch
2a06 won't open successfully. On Windows and Mac OS X, ChimeraX …

Jan 25, 2017:

4:47 PM Ticket #528 (Atom specifier wildcard characters * and ? in chain name) created by Tom Goddard
I'd like to be able to use wildcard characters * and ? in chain names …
4:01 PM Ticket #527 (~surf atomspec gives traceback) closed by Tom Goddard
fixed: Fixed. Made ~surface an alias for surface hide.
2:11 PM Ticket #527 (~surf atomspec gives traceback) created by Elaine Meng
Current daily build gives traceback with "~surf :ala" "~surf C" etc. …
1:51 PM Ticket #524 (trivial bug Model Panel initially shows model number as ellipsis) closed by pett
fixed
1:11 PM Ticket #526 (Spurious extra quotes in logged command) created by pett
If a command contains quotes, it is executed correctly but what is …

Jan 24, 2017:

6:29 PM 2017-01-23 edited by Tom Goddard
(diff)
6:04 PM SourceCode edited by Greg Couch
(diff)
5:56 PM SourceCode edited by Greg Couch
(diff)
5:55 PM SourceCode edited by Greg Couch
(diff)
5:54 PM SourceCode edited by Greg Couch
(diff)
3:07 PM Ticket #367 (Error after deleting all atoms) closed by pett
fixed: Deletion control largely remains in the C++ layer, but otherwise this …
12:57 PM Ticket #525 (cannot independently specify surface patches for same atoms in ...) created by Elaine Meng
Now we can have multiple molecular surfaces (SES) for the same or …
12:54 PM Ticket #524 (trivial bug Model Panel initially shows model number as ellipsis) created by Elaine Meng
If I open an ensemble (1plx) and close #1.2-80 and then create a …

Jan 23, 2017:

6:26 PM 2017-01-23 edited by Conrad Huang
(diff)
6:18 PM 2017-01-23 edited by Tom Goddard
(diff)
6:18 PM 2017-01-23 edited by Tom Goddard
(diff)
5:38 PM 2017-01-23 edited by Tom Goddard
(diff)
2:20 PM 2017-01-23 edited by Elaine Meng
(diff)
2:20 PM 2017-01-23 edited by Elaine Meng
(diff)
1:38 PM 2017-01-23 edited by Tom Ferrin
(diff)
11:57 AM 2017-01-23 created by Tom Ferrin
11:43 AM Ticket #523 (problem opening .py) closed by pett
not a bug
11:21 AM DeveloperMeetings edited by Tom Ferrin
(diff)
11:20 AM 2017-01-09 edited by Tom Ferrin
(diff)
4:14 AM Ticket #523 (problem opening .py) created by sergey.petrov@…
[…] FlgSh_H2_4Me_hshs_1.py​

Jan 21, 2017:

3:05 PM Ticket #515 (Opening FASTA file fails) closed by Conrad Huang
fixed: Fixed in 10697fb. The data format encoding information …

Jan 19, 2017:

8:12 PM Ticket #522 (command "surface surf-model close" broken) closed by Tom Goddard
fixed: Fixed
2:38 PM Ticket #521 (Problem positioning drawing copies) closed by Tom Goddard
invalid: You misunderstand the arguments to the Place constructor. If you want …
1:24 PM Ticket #522 (command "surface surf-model close" broken) created by Elaine Meng
Previously one could specify a surface model to close by its model …
10:12 AM Ticket #521 (Problem positioning drawing copies) created by tic20@…
Hi, I've been messing around a lot with Places over the past couple …

Jan 17, 2017:

4:40 PM Ticket #508 (Stereoscopic 360 camera broken if models moved) closed by Tom Goddard
fixed: Fixed.
2:54 PM Ticket #520 (Add setzoom command) closed by Tom Goddard
fixed: Fixed. Added zoom command pixelSize option that sets the size of one …
10:54 AM Ticket #520 (Add setzoom command) created by Tom Goddard
Useful to have a command setzoom that zooms to a specified Angstroms …

Jan 13, 2017:

11:26 AM Ticket #519 (Error closing volume viewer) closed by Tom Goddard
fixed: Fixed. Error when volume viewer panel closed caused by panel trying …

Jan 12, 2017:

5:29 PM Ticket #516 (Associating structure with sequence alignment leads to crash) closed by pett
fixed: The StructSequence.residue_at method was returning an Atom instead of …
5:08 PM Ticket #519 (Error closing volume viewer) created by pett
Clicking the 'X' button on the title bar of the volume viewer …
3:21 PM Ticket #518 (findclash gives traceback unless "test self" specified) created by Elaine Meng
Re the closed ticket #502: Don’t know how much of a fix this is, …

Jan 11, 2017:

11:17 AM 2017-01-09 edited by Tom Goddard
(diff)

Jan 10, 2017:

7:00 PM nightlydocker edited by Greg Couch
(diff)
6:54 PM nightlydocker created by Greg Couch
6:22 PM WikiStart edited by Greg Couch
(diff)
12:03 PM Ticket #517 (toolshed hide "Model Panel" does not hide model panel) created by Tom Goddard
The command toolshed hide "Model Panel" does not hide model panel. …

Jan 9, 2017:

1:53 PM 2017-01-09 edited by Scooter Morris
(diff)
12:14 PM 2017-01-09 created by Scooter Morris
12:13 PM DeveloperMeetings edited by Scooter Morris
(diff)

Jan 6, 2017:

7:25 PM Ticket #516 (Associating structure with sequence alignment leads to crash) created by Tom Goddard
Opening the nup84.ihm file (attached), and then expanding the …
7:00 PM Ticket #515 (Opening FASTA file fails) created by Tom Goddard
Opening the attached fasta file works the first time. Then when I …

Jan 5, 2017:

2:49 PM 2017-01-05 created by Conrad Huang
2:11 PM DeveloperMeetings edited by Conrad Huang
(diff)
2:10 PM DeveloperMeetings edited by Conrad Huang
(diff)
2:09 PM DeveloperMeetings2016 created by Conrad Huang
12:02 PM Ticket #514 (Make mmCIF read aniso_u (temperature factors)) closed by Greg Couch
fixed: Support for atom_site_anisotrop table has been added for just the U …
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