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Timeline
Sep 17, 2017:
- 3:08 AM Ticket #841 (ctrl-right-click interpreted as ctrl-left-click on Mac) created by
- A little bit of MouseMode weirdness. In ISOLDE during simulations I …
Sep 15, 2017:
- 12:50 PM Ticket #815 (chain-level zone atomspec not yet implemented) closed by
- fixed: Fixed in 332a29749. Chain zone atomspecs now use chain …
- 11:39 AM Ticket #829 (Ribbon normal vectors do not have length 1) closed by
- fixed
Sep 14, 2017:
- 6:33 PM Ticket #840 (Make 2d labels a model shown in Model Panel) created by
- Make 2d labels a top-level model. Currently 3d labels are a model but …
- 6:28 PM Ticket #839 ("close session" doesn't get rid of 2D labels) closed by
- fixed: Fixed. I think 2d labels should also close when you simply close all …
- 6:14 PM Ticket #830 (Non-main status text a little too large) closed by
- fixed: Vertical positioning of statusbar text was wrong. Fixed that. …
- 5:14 PM Ticket #839 ("close session" doesn't get rid of 2D labels) created by
- Example: start ChimeraX, click lightning bolt to show graphics …
- 5:01 PM Ticket #838 (Name selection command/GUI) created by
- From chimerax-users: One thing that is missing is a similar list of …
- 3:56 PM Ticket #837 (Allow lower detail ribbons for VR export) created by
- The ribbon divisions along the length of the ribbon currently can be …
- 3:41 PM 2017-09-14 created by
- 2:07 PM DeveloperMeetings edited by
- (diff)
- 1:26 PM msgpack-testing edited by
- (diff)
- 11:21 AM Ticket #836 (Allow fit sequential to work on partial molecules) created by
- Begin forwarded message: From: Oliver Clarke Subject: …
- 11:15 AM Ticket #832 (Bonds.visibles raises an error) closed by
- fixed: Fixed (both code and comment) in 320c40e12.
- 11:12 AM Ticket #834 (Status bar ugly font in Linux) closed by
- duplicate: Unfortunately we are not able to use Qt font rendering for status …
- 6:07 AM Ticket #835 (Order of events on ToolInstance deletion) closed by
- invalid: Actually, never mind. Just double-checked and I only get the traceback …
- 6:04 AM Ticket #835 (Order of events on ToolInstance deletion) created by
- From the ChimeraX programming guide under ToolInstance: delete() …
- 2:54 AM Ticket #834 (Status bar ugly font in Linux) created by
- Possibly just something to do with the new PyQt version? Sometime in …
- 2:34 AM Ticket #833 (Allow Drawing.position (or positions) = None) created by
- Just because this seems a very Pythonic/intuitive way of handling the …
- 1:35 AM Ticket #832 (Bonds.visibles raises an error) created by
- […] I get the impression that this is simply an old and unused …
- 1:28 AM Ticket #831 (Allow methods to access current changes to a specific Structure) created by
- At the moment in ISOLDE I have four different types of annotations to …
Sep 13, 2017:
- 5:23 PM Ticket #821 (Have pseudobonds respect user hide flags) closed by
- not a bug: Okay, the design intent of atom 'hide' flags are that when a hide bit …
- 2:46 PM Ticket #830 (Non-main status text a little too large) created by
- For non-main-window status lines, the text is slightly too large and …
- 2:05 PM Ticket #829 (Ribbon normal vectors do not have length 1) created by
- Ribbon normal vectors do not have length 1. Observed this with pdb …
- 10:08 AM ChangeLog edited by
- (diff)
Sep 12, 2017:
Sep 11, 2017:
Sep 10, 2017:
- 1:05 PM Ticket #828 (Typo in core/commands/cartoon.py) created by
-
Line 86:
residues.ribbon_hide_backbones, suppress_backbond_display) - 11:14 AM Ticket #827 (Structure file I/O issues) created by
- Simple-but-important one first: mmcif_write.py currently crashes due …
Sep 9, 2017:
- 4:14 PM Ticket #826 (Make ribbons use uint8 colors instead of float32) closed by
- fixed: Fixed in 3dc2ea602. Correctly treat ribbon colors as …
Sep 8, 2017:
- 1:17 PM Ticket #826 (Make ribbons use uint8 colors instead of float32) created by
- Ribbon code is currently calculating the vertex colors as float32 …
- 11:45 AM Ticket #825 (Incorrect planes read from OME TIFF file) created by
- Reading an 8-channel OME TIFF file from the Allen Institute …
Sep 7, 2017:
- 6:43 PM ChangeLog edited by
- (diff)
- 3:36 PM Ticket #824 (New Edit menu interferes with text copy) created by
- I don't know if this is fixable, but Mac clover-c after highlighting …
- 2:39 PM 2017-09-07 created by
- 2:08 PM DeveloperMeetings edited by
- (diff)
- 11:14 AM Ticket #823 (changing number of dashes resets pseudobond color) closed by
- fixed: Fixed. Was a color updating bug -- color of bond didn't change but …
- 10:37 AM Ticket #823 (changing number of dashes resets pseudobond color) created by
- Example: open 1zik hb sidechain restrict both reveal t color yellow …
Sep 5, 2017:
- 1:34 PM Ticket #822 (Improved drawing of symmetry equivalents) created by
- At present in the Clipper plugin I handle crystallographic symmetry by …
- 12:34 PM Ticket #633 (Status messages cause havoc by running event loop) closed by
- fixed: Made status bar render with OpenGL with no Qt event processing.
- 12:34 PM msgpack-testing created by
- 12:19 PM DeveloperMeetings edited by
- (diff)
- 11:37 AM 2017-08-24 edited by
- (diff)
- 4:07 AM Ticket #821 (Have pseudobonds respect user hide flags) created by
- I understand why it makes sense to have pseudobonds remain visible …
Sep 1, 2017:
- 5:26 PM Ticket #820 ('Session' object has no attribute 'undo') closed by
- not a bug: I don't think my development install was completely up to date.
- 5:14 PM Ticket #820 ('Session' object has no attribute 'undo') created by
- Open 5uak and click the 'hide ribbon' toolbar icon. Traceback (most …
- 11:39 AM Ticket #819 (Add option to make surfaces have thickness) created by
- Begin forwarded message: From: Elaine Meng Subject: interesting …
Aug 31, 2017:
- 7:10 PM Ticket #818 (core dump deleting atoms) closed by
- fixed: Fixed, I think. Could not reproduce the crash (working on Mac), but …
- 5:17 PM Ticket #818 (core dump deleting atoms) created by
- On Linux and Windows, but not always on Macs, deleting a chain will …
- 4:16 PM Ticket #817 (traceback trying to use texture command) closed by
- fixed: Fixed. Problem was image was not found because command didn't handle …
- 3:43 PM Ticket #817 (traceback trying to use texture command) created by
- Maybe I misunderstood the usage information, but when I had mol surf …
- 1:04 PM Ticket #691 ("atomic" keyword to "open" for structures) closed by
- fixed
Aug 30, 2017:
- 12:59 PM Ticket #816 (Save dialog should add file suffix if none typed in) closed by
- fixed
- 10:58 AM ChangeLog edited by
- (diff)
- 10:53 AM ChangeLog edited by
- (diff)
- 8:58 AM Ticket #815 (chain-level zone atomspec not yet implemented) reopened by
- As Eric hinted at, this approach only includes polymers. My 1zik …
Aug 29, 2017:
- 4:44 PM Ticket #815 (chain-level zone atomspec not yet implemented) closed by
- fixed: Using Eric's two-level conversion for chains<->atoms, the chain zone …
- 4:33 PM Ticket #816 (Save dialog should add file suffix if none typed in) created by
- The File / Save... dialog currently does not add the file suffix if a …
- 4:30 PM Ticket #814 (Save .obj error) closed by
- fixed: Fixed. The File / Save... menu dialog was broken due to some recent …
- 3:49 PM Ticket #815 (chain-level zone atomspec not yet implemented) created by
- “/<“ doesn’t promote to chain… gives the same set of atoms as “@<“ …
Aug 28, 2017:
- 6:03 PM Ticket #814 (Save .obj error) created by
- […]
- 4:38 PM Ticket #801 (Unpredictable keyword completion) reopened by
- Sorry to reopen this when the problem is that we didn't specify the …
- 4:22 PM Ticket #812 (Adding pseudobonds causes graphics error) closed by
- fixed: Fixed. Pseudobond deletion was not being detected by graphics and …
- 3:08 PM Ticket #813 (prolines initially shown as "hooks" (open rings)) created by
- However, simply recoloring them shows the closed ring. Example: open …
Aug 26, 2017:
- 5:58 PM Ticket #776 (Right-click on Side View produces traceback) closed by
- fixed: Fixed a while ago.
- 5:46 PM Ticket #812 (Adding pseudobonds causes graphics error) created by
- Finding hydrogen bonds for 1eyg produces: 414 hydrogen bonds found …
- 5:43 PM Ticket #801 (Unpredictable keyword completion) closed by
- fixed: Done.
Aug 25, 2017:
- 3:42 PM Ticket #811 (Optimize cmap hdf5 format read speed for light microscopy data) created by
- The Chimera map format (*.cmap) HDF5 seems to be slow reading …
Aug 24, 2017:
- 3:04 PM 2017-08-24 edited by
- (diff)
- 3:00 PM 2017-08-24 edited by
- (diff)
- 2:51 PM 2017-08-24 created by
- 2:06 PM DeveloperMeetings edited by
- (diff)
- 2:05 PM Ticket #809 (mmCIF CA trace not quite correct) closed by
- fixed: Changed missing structure test for adjacent residues from gap or (not …
- 1:55 PM Ticket #810 (labels == slow) created by
- In the attached session I have roughly 10 labels shown, but the …
- 1:44 PM Ticket #809 (mmCIF CA trace not quite correct) created by
- For structures that change from full-atomic to chain-trace at some …
- 12:59 PM Ticket #808 (attempt to cartoon P-only nucleic in 1gsg gives indexError traceback) created by
- open 1gsg cartoon ...gives the following traceback (can be blamed on …
- 12:05 PM Ticket #807 (Atoms are wrong color after some are deleted) closed by
- fixed: Fixed. Recent graphics update code changes were not updating colors …
- 11:46 AM Ticket #807 (Atoms are wrong color after some are deleted) created by
- open 3fx2 hide ribbon ; show atoms delete solvent Atoms end up all …
Aug 22, 2017:
- 6:07 PM ChangeLog edited by
- (diff)
- 2:51 PM ChangeLog edited by
- (diff)
- 2:17 PM Ticket #806 (Chimera X QT bug?) created by
- […] [[Image(...)]]
Aug 21, 2017:
- 10:49 AM Ticket #805 (Help viewer no horizontal scroll if window made narrower than image) created by
- For example, start ChimeraX, menu: Help... User Guide, choose (under …
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