![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jan 14, 2020:
- 12:41 PM Ticket #2741 (nicer form for ligand-table selection command, when possible) closed by
- fixed: Now only uses ::name="123" when needed
- 12:08 PM Ticket #2731 (Error in Basic Actions restoring session: invalid atom specifier) closed by
- fixed: Fixed in 8c604053a. Instead of ordering the name …
- 11:01 AM Ticket #2741 (nicer form for ligand-table selection command, when possible) created by
- […]
Jan 13, 2020:
- 7:10 PM Ticket #2740 (Cap colors don't track surface colors) created by
- […]
- 6:29 PM Ticket #2739 (Poor visibility for side view clip planes) created by
- […] sideview.png
- 5:54 PM Ticket #2709 (No bonds for residue UNL (unknown ligand) in 6dhf) closed by
- fixed: Changed code to connect atoms by distance when template (CCD entry) …
- 2:03 PM Ticket #2738 (Make volume mesh_lighting = False keep depth cueing) created by
- Currently mesh lighting false turns off all lighting including depth …
- 1:28 PM Ticket #2733 (Changing lighting in VR: CompositorError_TextureUsesUnsupportedFormat) closed by
- can't reproduce: Looks like a graphics drive problem. The VR created textures where it …
- 1:14 PM Ticket #2737 (Normals reversed for negative contours) closed by
- not a bug: There are Volume options that control these behaviors and there are …
- 12:51 PM Ticket #2734 (Closing tools before session restore: 'MainWindow' object has no ...) closed by
- duplicate
- 6:38 AM Ticket #2737 (Normals reversed for negative contours) created by
- […] wireframe_lighting.jpg
- 6:04 AM Ticket #2736 (all-same-value attribute coloring yields black instead of 'mid' color) created by
- […]
Jan 12, 2020:
- 6:42 AM Ticket #2735 (OpenMM crash running simulation) created by
- […]
- 3:22 AM Ticket #2734 (Closing tools before session restore: 'MainWindow' object has no ...) created by
- […]
Jan 11, 2020:
Jan 10, 2020:
- 2:20 PM Ticket #2732 (BILD arrow shaft juts through arrowhead) closed by
- fixed: That is correct. The cone_geometry() returns a cone centered at the …
- 11:04 AM Ticket #2732 (BILD arrow shaft juts through arrowhead) created by
- […]
- 6:51 AM Ticket #2731 (Error in Basic Actions restoring session: invalid atom specifier) created by
- […]
Jan 9, 2020:
- 3:57 PM Ticket #1390 (Need merged view of help documentation) closed by
- fixed: Make it so vdocs can built using the chimerax-daily build to generate …
- 3:52 PM Ticket #2599 ("select pyrimidine" doesn't select anything) closed by
- not a bug: There are no actual pyrimidines in 1bna (or regular nucleic acids for …
- 2:19 PM Ticket #2730 (Surface recomputation: cannot convert float NaN to integer) closed by
- can't reproduce: This error occurred due to NaN atom coordinates when recomputing a …
Jan 8, 2020:
- 5:25 PM Ticket #2730 (Surface recomputation: cannot convert float NaN to integer) created by
- […]
- 1:25 PM Ticket #2729 (Graphics error after switching users) created by
- […]
- 9:53 AM Ticket #2728 (Clipper: math domain error) created by
- […]
- 1:43 AM Ticket #2727 (Cannot launch on Windows) created by
- […]
Jan 7, 2020:
- 3:55 PM Ticket #2721 (Index out of bounds showing interface contact residues) closed by
- fixed: Fixed. The error resulted from making an interfaces plot and then …
- 2:25 PM Ticket #2726 (Have selection remember ordering) created by
- Selecting 4 atoms with the mouse and then using 'sel' as the atom spec …
- 2:23 PM Ticket #2719 (Graphics problem drawing silhouettes) closed by
- duplicate: Duplicate. Believed fixed about 4 months ago.
- 1:50 PM Ticket #2713 (Clashes: "Include intramolecule" option throws error) closed by
- fixed: Fix available in next build.
- 1:28 PM Ticket #2725 (Problem starting ISOLDE) closed by
- duplicate: Duplicate of #2215.
- 10:49 AM Ticket #2717 (AddH: can't form new hydrogen name) closed by
- nonchimerax: Hi Michael, Glad you were able to resolve the issue yourself. This …
- 10:43 AM Ticket #2716 (User confused about how to show trajectories) closed by
- not a bug
- 7:33 AM Ticket #2725 (Problem starting ISOLDE) created by
- […]
- 1:06 AM Ticket #2722 (Wrong version of ChimeraX for ISOLDE) closed by
- not a bug
Jan 6, 2020:
- 5:35 PM Ticket #2715 (Two H-bond pseudobonds between same atom pair) closed by
- not a bug: This is deliberate. There is one pseudobond for every donor→acceptor …
- 5:00 PM Ticket #2706 (Problem with item chooser) closed by
- duplicate
- 4:59 PM Ticket #2705 (Problem with item chooser) closed by
- duplicate: This was fixed in August.
- 4:59 PM Ticket #2703 ('Ring' object has no attribute '_c_pointer_ref') closed by
- duplicate: This was fixed on Oct 24, 2019. It is a problem with session restore …
- 4:56 PM Ticket #2704 (name 'handlers' is not defined) closed by
- fixed: Hi Tony, Thanks for reporting this bug. It's fixed now and the fix …
- 4:35 PM Ticket #1563 (Various ChimeraX startup switches ineffective in Windows) closed by
- fixed: User accepted fix.
- 4:01 PM DeveloperMeetings edited by
- (diff)
- 4:00 PM WikiStart edited by
- (diff)
- 3:59 PM WikiStart edited by
- (diff)
- 3:56 PM WikiStart edited by
- (diff)
- 3:53 PM Features created by
- 3:45 PM WikiStart edited by
- (diff)
- 3:43 PM WikiStart edited by
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- 3:41 PM WikiStart edited by
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- 3:32 PM WikiStart edited by
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- 3:30 PM WikiStart edited by
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- 3:28 PM WikiStart edited by
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- 3:21 PM WikiStart edited by
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- 12:43 PM Ticket #2724 (Chain-table selection wrong when residue numbering is non-monatonic) created by
- […]
- 11:47 AM Ticket #2723 (Lazy managers) created by
- Would like the ability to start a manager later than ChimeraX startup, …
- 10:47 AM Ticket #2722 (Wrong version of ChimeraX for ISOLDE) created by
- […]
- 5:11 AM Ticket #2721 (Index out of bounds showing interface contact residues) created by
- […] VHL - Cul2 (Core).cxs
Jan 4, 2020:
- 2:26 PM Ticket #2720 (RFE: selector or attribute for standard residues with missing atoms) created by
- It would be useful to be able to quickly identify truncated residues …
- 11:10 AM Ticket #2719 (Graphics problem drawing silhouettes) created by
- […]
Jan 3, 2020:
- 11:45 AM Ticket #2718 (Have "more info..." link result offer link to structure's PDB page) created by
- […]
- 7:15 AM Ticket #2717 (AddH: can't form new hydrogen name) created by
- […]
- 5:02 AM Ticket #2716 (User confused about how to show trajectories) created by
- […]
Jan 2, 2020:
- 7:02 PM Ticket #2715 (Two H-bond pseudobonds between same atom pair) created by
- […]
- 12:41 PM Ticket #2714 (Allow custom option on Open File dialog) created by
- Would like to allow custom options on the Open File dialog for …
- 11:22 AM Ticket #2698 (OpenGL buffer "None" was not deleted before core.graphics.Buffer destroyed) closed by
- duplicate: The OpenGL buffer not deleted warning related to selection were fixed …
- 10:33 AM Ticket #2713 (Clashes: "Include intramolecule" option throws error) created by
- […]
- 9:18 AM Ticket #2712 (A lot of array size mismatches after deletions) created by
- […]
- 8:13 AM Ticket #2711 (Apparently harmless error when building Clipper) created by
- […]
- 6:07 AM Ticket #2710 (Somewhat mysterious warning when building bundles) created by
- […]
- 2:21 AM Ticket #2709 (No bonds for residue UNL (unknown ligand) in 6dhf) created by
- […]
- 2:15 AM Ticket #2708 (AddH: 5ky0: list index out of range while finding roomiest) created by
- […]
Dec 31, 2019:
- 4:15 PM Ticket #2707 (Problem showing Toolbar help: failed to load external entity) created by
- […]
- 11:02 AM Ticket #2706 (Problem with item chooser) created by
- […]
- 10:54 AM Ticket #2705 (Problem with item chooser) created by
- […]
Dec 30, 2019:
Dec 28, 2019:
Dec 26, 2019:
Dec 25, 2019:
Dec 23, 2019:
- 7:00 PM Ticket #2699 (Problem with Map Eraser closing models during session close) closed by
- duplicate: This was fixed Nov 14, 2019. Get the daily build. Duplicate of #2577
- 3:37 PM ChangeLog edited by
- (diff)
- 9:44 AM Milestone 0.91 completed
Dec 21, 2019:
Dec 20, 2019:
- 8:05 PM Ticket #2698 (OpenGL buffer "None" was not deleted before core.graphics.Buffer destroyed) created by
- […]
- 7:25 AM Ticket #2575 (incorrect error message from "open" command) closed by
- fixed: I think this is all working now.
- 7:23 AM Ticket #2647 (Updated ChimeraX but not ISOLDE) closed by
- fixed
- 7:23 AM Ticket #2646 (Problem starting ISOLDE: cannot import name 'Symmetry_Manager' from ...) closed by
- not a bug: A simple version-incompatibility issue. The good news is that going in …
- 7:18 AM Ticket #2445 (Undesirable center of rotation) closed by
- fixed: I'm going to go ahead and tentatively close this as "fixed", since the …
- 7:15 AM Ticket #2407 (Problem saving session involving Clipper) closed by
- fixed: Session save/restore is now all working in my builds, and will be …
- 7:12 AM Ticket #2205 (ChimeraX closed when loading ISOLDE demo file) closed by
- wontfix: Cleaning up old tickets. The problem of ISOLDE/Clipper not working …
- 7:09 AM Ticket #2104 (Clipper: 'NXmapHandler' object has no attribute 'set_display_style') closed by
- fixed: Just cleaning up old tickets... this problem does not occur in any …
- 7:07 AM Ticket #1779 (ISOLDE picking: unsupported operand type(s) for -: 'NoneType' and ...) closed by
- fixed: Long since fixed (sorry for not closing at the time). ISOLDE's tugging …
- 7:05 AM Ticket #2546 (Wrong OpenCL driver used on machine with Nvidia and Intel GPUs) closed by
- not a bug: Turns out the information I read about OpenMM not making any effort to …
- 6:59 AM Ticket #1531 (session.models.assign_id() failure) closed by
- fixed: Just doing some Xmas tidying up... this has all been working fine for …
- 6:57 AM Ticket #2589 (Basic Clipper session restore) closed by
- fixed: Save/restore seems to be quite stable for both Clipper and ISOLDE now, …
Dec 19, 2019:
- 8:41 PM Ticket #2695 (Toolshed text needs updating) closed by
- fixed: Fixed in 3660a5368.
- 3:58 PM Ticket #1997 (Radio-button right-mouse icons) closed by
- fixed: The toolbar button that corresponds to the current right mouse mode is …
- 3:51 PM Ticket #2667 (ToolShed security certificate expired) closed by
- fixed: New certificate was issued after cxtoolshed website was "fixed".
- 3:48 PM Ticket #2586 (fmt.category is a set) closed by
- can't reproduce: Presumably has been fixed already.
- 2:31 PM Ticket #2697 (Graphics problem drawing silhouettes) closed by
- can't reproduce: Appears user was moving and rotating selected model with mouse. They …
- 2:05 PM Ticket #2697 (Graphics problem drawing silhouettes) created by
- […]
- 11:20 AM Ticket #2692 (One-shot triggersets: 'set' object has no attribute 'append') closed by
- fixed: I have committed a fix. As the only current user of default-one-shot …
- 10:12 AM Ticket #2691 (Error with nucleotide/ring graphics after session restore) closed by
- duplicate: Hi Nicholas, This problem was fixed about two months after you …
- 10:11 AM Ticket #2690 (Graphics error (possibly drawing selection)) closed by
- can't reproduce: Probable VMWare Mesa graphics bug. Also using a very old ChimeraX.
- 8:15 AM Ticket #2696 (Direct selection of swapaa residue type) created by
- […]
- 6:47 AM Ticket #2695 (Toolshed text needs updating) created by
- […]
- 5:55 AM Ticket #2694 (Autoscale ToolShed downloads graph widget) created by
- This is very minor, but is there a configuration flag in the …
Dec 18, 2019:
- 4:03 PM ChangeLog edited by
- (diff)
- 12:32 PM Ticket #2693 (Problem importing surface module due to missing libstdc++.so.6) created by
- […]
- 6:20 AM Ticket #2692 (One-shot triggersets: 'set' object has no attribute 'append') created by
- […]
Dec 17, 2019:
- 11:59 PM Ticket #2691 (Error with nucleotide/ring graphics after session restore) created by
- […]
- 1:12 PM Ticket #2690 (Graphics error (possibly drawing selection)) created by
- […]
- 10:55 AM Ticket #2689 (Add bundle_info.xml tag for documentation file locations) created by
- Instead of enforcing a particular directory structure for …
Dec 16, 2019:
- 5:41 PM ChangeLog edited by
- (diff)
- 3:28 PM Ticket #2508 (atomic structure session save: 'utf-8' codec can't decode byte: ...) closed by
- fixed: Changed cchar_to_pystring() [used when forming session-save data] to …
- 11:25 AM Ticket #2688 (Infinite recursion of map.session.existing_directory) closed by
- fixed: Fixed. Opening a session that contains a path to a map in a …
- 11:07 AM Ticket #2686 (macOS Catalina--cannot open either CHimera) closed by
- duplicate: Hi Thomas, Yes, if you right-click (or control-click) on the …
- 10:54 AM Ticket #2687 (Allow REST server to be shut down remotely) closed by
- fixed: Fixed in 3c9d3446e. Instead of adding another special …
- 4:22 AM Ticket #2688 (Infinite recursion of map.session.existing_directory) created by
- […] model_for_powerstroke.cxs
- 3:50 AM Ticket #2687 (Allow REST server to be shut down remotely) created by
- I'd like to suggest the following patch to …
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