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Timeline
May 3, 2018:
- 5:19 PM Ticket #1072 (Document mmCIF output tables) closed by
- fixed
- 5:19 PM Ticket #581 (colornames that start with "pale" get confused with "palette") closed by
- fixed: Fixed by fixe to #969.
- 2:58 PM 2018-05-03 created by
- 2:06 PM DeveloperMeetings edited by
- (diff)
- 1:29 PM Ticket #1108 (error on save image when object clipped near and far) created by
- […] image3.png image4.png
May 2, 2018:
- 4:12 PM Ticket #1107 (quickstart tutorial has traceback) closed by
- fixed: Fixed. Removed volume surface_levels attribute yesterday but missed …
- 3:49 PM Ticket #1107 (quickstart tutorial has traceback) created by
- Doing the volume example, after executing: […] I get: […]
- 1:38 PM Ticket #1101 (3D Labels breaking session restore) closed by
- fixed: Fixed, for now.
- 1:30 PM Ticket #1106 (Dependencies on other bundle's include dirs) created by
- If a bundle declares a dependency on another bundle, then compiled …
- 5:35 AM Ticket #1105 (ISOLDE run time error) created by
- […]
May 1, 2018:
- 12:33 PM Ticket #1102 (chimerax.core.map.data.fileformats.File_Format_Error:) closed by
- nonchimerax: The ChimeraX error message means the MRC file header has completely …
- 12:20 PM Ticket #1104 (Installing ISOLDE gives traceback, needs user-friendly error message) created by
- Current ISOLDE 1.0b1 installed from Toolshed on macOS gives an …
- 11:18 AM Ticket #1103 (AddH fails after deleting atoms) closed by
- can't reproduce: It is probably a consequence of the import hook -- code that directly …
- 9:12 AM Ticket #1103 (AddH fails after deleting atoms) created by
- delete H addh hbond false leads to the below traceback: […]
- 5:23 AM Ticket #1102 (chimerax.core.map.data.fileformats.File_Format_Error:) created by
- […]
Apr 30, 2018:
- 8:34 PM Ticket #1100 (ToolShed fails on non-integer version numbers) closed by
- fixed: I changed the code to handle any number of dot-separated integers …
- 4:59 PM Ticket #1101 (3D Labels breaking session restore) reopened by
- 3:45 PM Ticket #1101 (3D Labels breaking session restore) closed by
- fixed: Works with my current developer build. Appears to be fixed. Get this …
- 2:26 PM Ticket #1101 (3D Labels breaking session restore) created by
- open 1gcn use right mouse mode to add a residue label save session …
- 12:20 PM ChangeLog edited by
- (diff)
- 5:48 AM Ticket #1100 (ToolShed fails on non-integer version numbers) created by
- I uploaded ISOLDE 1.0b1 (which should be valid according to …
- 3:54 AM Ticket #1099 (PyPI dependency fail on 'make app-install') created by
- Pulls successfully from the repo in Linux, but on the Mac: […] …
Apr 27, 2018:
- 3:59 PM 2018-04-26 edited by
- (diff)
- 10:48 AM Ticket #1098 (Aplique labels on helix tubes and ribbons) created by
- Would be cool to be able to paint residue numbers directly onto helix …
- 10:45 AM Ticket #1097 (Jupyter tab completion no longer working on some objects) closed by
- fixed: Weird, works in 0.5 and in 0.7 daily build, but not 0.6. I guess …
- 10:31 AM Ticket #1096 (Bug in c_array_property()) closed by
- fixed: Fixed. Ugh. Collections do an evil thing, when C++ objects are …
- 6:49 AM Ticket #1097 (Jupyter tab completion no longer working on some objects) created by
- Version 0.6 official release. e.g. […] No longer brings up the …
- 6:46 AM Ticket #1096 (Bug in c_array_property()) created by
- This is rather odd. Using the molc API, I have a class …
Apr 26, 2018:
- 2:37 PM 2018-04-26 created by
- 2:03 PM DeveloperMeetings edited by
- (diff)
- 1:59 PM Ticket #1035 (some docked dialogs persist in "full window" mode and block small ...) closed by
- fixed: Settings dialog now respects the 'hide docked windows' icon
Apr 25, 2018:
- 5:48 PM ChangeLog edited by
- (diff)
- 5:48 PM ChangeLog edited by
- (diff)
- 5:47 PM ChangeLog edited by
- (diff)
- 5:40 PM ChangeLog edited by
- (diff)
- 4:19 PM ChangeLog edited by
- (diff)
Apr 24, 2018:
- 4:07 PM Ticket #1095 (alias can cause duplicates in "usage" output) created by
- "usage del" reports "delete pbonds" twice, once as a direct …
- 2:22 PM Ticket #1094 (traceback closing all models aftering coloring by ESP) closed by
- fixed: Fixed. Code to delete drawings forgot to delete auto recoloring …
- 12:34 PM Ticket #1094 (traceback closing all models aftering coloring by ESP) created by
- version UCSF ChimeraX version: 0.7 (2018-04-21) I tried subsets of …
- 12:12 PM Ticket #1093 (Problem creating ribbon graphics) closed by
- fixed: Fixed in tonight's ChimeraX builds. Zero length array of spline atoms …
Apr 20, 2018:
Apr 19, 2018:
- 3:09 PM 2018-04-19 created by
- 2:04 PM DeveloperMeetings edited by
- (diff)
- 1:38 PM Ticket #1092 (rainbow broken) closed by
- fixed: Fixed. New color sequential subcommand forgot to handle case when no …
- 12:49 PM Ticket #1092 (rainbow broken) created by
- "rainbow" command (doesn't seem to matter what structure) gives …
- 4:30 AM Ticket #1091 ("View all" doesn't play well with "cofr center showpivot true") created by
- The pivot indicator is currently considered part of the scene when …
Apr 18, 2018:
- 5:43 PM Ticket #969 (Color subcommands for zone, map, etc.) closed by
- fixed: Done. Made color subcommands zone, sequential, electrostatic, sample, …
- 4:49 PM Ticket #1005 (Open File dialog gives lots of Debug output on Windows) closed by
- duplicate: Duplicate of #1042
- 4:47 PM Ticket #1049 (RE: VR ON bug in latest release) closed by
- duplicate: SteamVR bug, worked around it in ChimeraX a month ago.
- 4:46 PM Ticket #1048 (Re: VR ON bug in latest release) closed by
- duplicate: SteamVR bug, worked around it in ChimeraX a month ago.
- 4:46 PM Ticket #1047 (VR ON bug in latest release) closed by
- duplicate: SteamVR bug, worked around it in ChimeraX a month ago.
- 4:46 PM Ticket #1046 (VR ON bug in latest release) closed by
- duplicate: SteamVR bug, worked around it in ChimeraX a month ago.
- 4:45 PM Ticket #1040 (OpenGL version not recognized) closed by
- nonchimerax: Inadequate graphics provided by driver.
- 4:44 PM Ticket #1032 (attempting VR) closed by
- not a bug: No response. Assume split command is working now.
- 3:47 PM Ticket #1090 ("vr on": 'utf-8' codec can't decode byte: invalid continuation byte) closed by
- fixed: Fixed in tonight's builds. New SteamVR versions generate an benign …
- 9:30 AM Ticket #1090 ("vr on": 'utf-8' codec can't decode byte: invalid continuation byte) created by
- […]
- 7:21 AM Ticket #1089 (Option to recursively include contents of directory in bundle) created by
- Adding a copy of my Sphinx-generated documentation to the ISOLDE build …
Apr 16, 2018:
- 6:03 PM ChangeLog edited by
- (diff)
- 1:50 PM 2018-04-16 edited by
- (diff)
- 1:26 PM 2018-04-16 created by
- 1:17 PM Ticket #621 (Core bundle refactoring) closed by
- duplicate: Superseded by #1050
- 12:17 PM DeveloperMeetings edited by
- (diff)
- 11:25 AM Ticket #1034 (allow glycine CAs to be shown with ribbon) closed by
- wontfix
- 10:16 AM Ticket #1088 (Add a smart initial display toolbar button and preset command) created by
- Would like to be able reproduce the display style and color (ribbon, …
- 10:11 AM Ticket #687 (Pick atoms beneath density map surfaces) closed by
- fixed: About 6-12 months ago I made picking atoms through transparent volume …
- 10:08 AM Ticket #833 (Allow Drawing.position (or positions) = None) closed by
- wontfix: Won't allow position = None because this places a burden on all code …
- 10:03 AM Ticket #1087 (Add mouse mode to position 2d labels) created by
- Add mouse mode to position 2d labels
- 9:54 AM Ticket #988 (Fix volume linear interpolation) closed by
- fixed: Fixed a month ago.
- 9:52 AM Ticket #964 (Mirror VR on desktop display) closed by
- fixed: Fixed. vr command now turns of synchronization to vertical refresh …
- 4:10 AM Ticket #1076 (Signs of memory leak during toolshed install) closed by
- can't reproduce: Still not sure what was going on here, but it's not coming back. …
- 4:05 AM Ticket #1081 (Bug in unit testing) closed by
- not a bug
Apr 13, 2018:
- 12:22 PM Ticket #940 (Use newer OpenSSL on Mac OS X) closed by
- fixed: Fixed by using OpenSSL and setting SSL_CERT_FILE environment variable …
- 12:13 PM Ticket #736 (Need tool for managing active tools) closed by
- fixed: Implemented as Active Tools in Utilities category.
- 11:53 AM Ticket #1085 ("name frozen" target reported to contain models after those models ...) closed by
- fixed: Should be fixed in the daily build. Needed to refresh Objects …
Apr 12, 2018:
- 3:41 PM Ticket #1014 (mmCIF not assigning ss_id correctly) closed by
- fixed: ss_ids are now normalized before first use: 0 for coil, helix/strand …
- 12:59 PM Ticket #1086 (Show modified residues in smart display?) created by
- Xiaokun Shu opened his GFP structure 2duf and the chromophore (:C12) …
- 10:54 AM ChangeLog edited by
- (diff)
Apr 11, 2018:
- 3:28 PM ChangeLog edited by
- (diff)
- 12:29 PM Ticket #1085 ("name frozen" target reported to contain models after those models ...) created by
- If a frozen user-defined target includes parts of more than one model …
- 11:59 AM Ticket #1084 ("name delete all" gives traceback: 'is_selector_reserved' is not defined) created by
- "name delete all" deletes built-in targets, whereas it should just …
- 11:59 AM Ticket #1082 (Ability to temporarily disable specific mouse modes) closed by
- wontfix: There are plenty of commands that can modify structures (e.g. deleting …
- 3:57 AM Ticket #1083 (Add missing sidechains) created by
- Would be great to have this as a command. Could be a simple wrapper …
- 3:54 AM Ticket #1082 (Ability to temporarily disable specific mouse modes) created by
- Up until now I've been disabling the entire mouse modes toolbar any …
Apr 10, 2018:
- 8:22 AM Ticket #1081 (Bug in unit testing) created by
- Not sure why I was suddenly hit with this, other than that I'm …
Apr 9, 2018:
- 5:39 PM Ticket #1075 (label (single?) color not saved in session) closed by
- fixed
- 4:02 PM Ticket #1080 (Feature needed for ConSurf) created by
- 1) Read Clustal ALN alignments 2) Show alignment headers 2b) Make …
- 1:30 PM Ticket #1079 (distance label format not saved in session) closed by
- fixed
- 12:11 PM Ticket #1079 (distance label format not saved in session) created by
- distance label is colored black when I save the attached session, but …
- 12:07 PM Ticket #1078 (better mouse mode icon location specification) created by
- The current scheme for mouse mode icons isn't very extensible since …
- 10:07 AM Ticket #1077 (Working with InterSphinx) created by
- (Hope I'm asking the right person!) I'm finally getting around to …
- 8:25 AM Ticket #1076 (Signs of memory leak during toolshed install) created by
- OK, this is doing my head in somewhat. In my ISOLDE source, if I add …
Apr 7, 2018:
- 1:59 PM Ticket #617 (Registration support) closed by
- fixed: Still need to link toolshed access with extending registration …
Apr 6, 2018:
- 2:55 PM Ticket #1075 (label (single?) color not saved in session) created by
- I had adjusted label colors by using the color-well button in the …
- 10:53 AM Ticket #1073 (ChimeraX bug | No such file or directory | Desktop/) closed by
- fixed: Fixed. Image save and movie save toolbar buttons will save in current …
- 12:00 AM Milestone 0.6 completed
- == Chimera Features * user registration tool (should be done soon …
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