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Timeline
Nov 4, 2016:
Nov 3, 2016:
- 6:07 PM Ticket #471 (Commands executed twice) created by
- Sometimes commands are executed twice when entered in the command line …
Nov 2, 2016:
- 11:01 AM Ticket #470 (Multiple copies of shell tool) created by
- The Shell menu entry used multiple times brings up multiple shells. …
Nov 1, 2016:
- 2:43 PM Ticket #397 (Missing bonds in mmCIF 1tna) closed by
- fixed: Decided to replace * with ' in atom names in mmCIF files to handle …
- 2:23 PM Ticket #467 (Density map toolbar thinks it is the mouse modes tool) closed by
- fixed: Fixed. Had used value of variable from outer scope, which, of course, …
- 2:19 PM Ticket #436 (Tool setup.py cannot register multiple extensions for file format) closed by
- fixed: Both .fa and .msf files can be opened.
- 2:08 PM Ticket #469 (HTML link to open local file should be interpreted relative to HTML ...) created by
- Currently ChimeraX interprets the local file location relative to its …
- 2:03 PM Ticket #468 (sop zone doesn't work on non-square mesh) created by
- If I set "vol all style mesh square f" then "sop zone" near some atoms …
- 10:25 AM Ticket #467 (Density map toolbar thinks it is the mouse modes tool) created by
- Menu Tools / Toolbar / Density Map Toolbar gives this bizarre error …
Oct 31, 2016:
- 3:07 PM Ticket #466 (Use map for CoordSets) created by
- For performance, change CoordSets from vector to map. As per T.G.: …
- 1:31 PM Ticket #415 (Model panel expands all hierarchy when models opened/closed) closed by
- fixed: All good things come to those who wait.
Oct 28, 2016:
- 12:09 PM Ticket #465 (atomic Collection.subtract() does not preserve element order) created by
- Subtracting collections of chains, residues, atoms does not preserve …
Oct 27, 2016:
- 4:47 PM Ticket #213 (mmCIF NMR ensembles don't propagate secondary structure) closed by
- fixed: Copy secondary structure assignments from first model to the others.
- 4:11 PM Ticket #455 (Capitalization of multi-character chain ids in atom specs) closed by
- fixed: Changed mmCIF reader to examine all letters in chain id for lowercase …
- 3:33 PM Ticket #455 (Capitalization of multi-character chain ids in atom specs) reopened by
- 2:50 PM 2016-10-27 created by
- 2:06 PM DeveloperMeetings edited by
- (diff)
- 11:31 AM Ticket #463 (Session save fails after blast results panel closed) closed by
- fixed: Fixed in 1e733ab. Was not calling base class "delete" …
- 11:19 AM Ticket #464 (mmCIF reader does not assign secondary structure to ensemble models) closed by
- duplicate: Duplicate of #213
- 11:10 AM Ticket #464 (mmCIF reader does not assign secondary structure to ensemble models) created by
- Opening 5ijn is extremely slow because we compute secondary structure …
Oct 26, 2016:
- 8:56 PM Ticket #454 (Crash showing cartoon) closed by
- fixed: Should be fixed in 667a8fa. Was not careful enough when …
- 6:35 PM Ticket #463 (Session save fails after blast results panel closed) created by
- After using the blast command and then closing the blast results panel …
- 4:46 PM Ticket #457 (Session restore error, atomic structure) closed by
- fixed: Fixed with commit 8cbc339f8786a9f05b17fc387c70e3a77c517136
- 3:15 PM Ticket #462 (Rename open command explode option to "trajectory") created by
- Easier to understand the open command option to put all coordinates in …
- 3:14 PM Ticket #461 (Ribbons don't update when coordinate set changes) created by
- Changing coordinate sets with the coordset command does not cause …
- 3:13 PM Ticket #460 (mmCIF reader does not have "explode" option to make coordinate sets) created by
- The mmcif reader needs to be able to put multiple models into …
- 3:04 PM Ticket #424 (mmCIF chain names) closed by
- fixed: Interim solution: For the pdbx_poly_seq_scheme information, added a …
- 12:39 PM Ticket #459 (extract_mmCIF_tables returned NULL without setting an error) closed by
- fixed: I wasn't able to reproduce that error with asym4.cif.bz2, but it was …
- 10:29 AM Ticket #459 (extract_mmCIF_tables returned NULL without setting an error) created by
- I've seen this error several times where extract_mmCIF_tables C++ code …
- 9:47 AM Ticket #458 (ChimeraX fetched data deleted by Mac OS upgrade) created by
- Upgrading Mac OS from 10.12 to 10.12.1 apparently deleted …
Oct 25, 2016:
- 5:05 PM Ticket #455 (Capitalization of multi-character chain ids in atom specs) closed by
- fixed: Added code to mmCIF reader to set the lower_case_chains flag if need be.
- 2:19 PM Ticket #457 (Session restore error, atomic structure) created by
- The attached nuclear pore asym3.cxs session from July 15 gives a …
- 11:01 AM Ticket #456 (Update surface zone when surface changes) created by
- On Oct 25, 2016, at 7:03 AM, Tristan Croll wrote: ... One more bug I …
Oct 24, 2016:
- 2:19 PM Ticket #455 (Capitalization of multi-character chain ids in atom specs) created by
- Begin forwarded message: From: Tristan Croll Subject: Bug: chain …
Oct 21, 2016:
- 7:05 PM Ticket #454 (Crash showing cartoon) created by
- Showing a cartoon on the attached 500,000 atom nuclear pore asym unit …
Oct 20, 2016:
Oct 19, 2016:
- 5:02 PM Ticket #453 (Undocked panels float above other apps on Mac) created by
- On the Mac undocked tool panels float above the main ChimeraX window …
Oct 18, 2016:
- 6:12 PM Ticket #452 (STL bundle fails to correctly read written STL file) closed by
- fixed: Fixed. C++ code with 2 assignments on one line where one took the …
- 4:02 PM Ticket #452 (STL bundle fails to correctly read written STL file) created by
- The STL bundle generates bad triangles when reading STL files ChimeraX …
- 11:55 AM Ticket #451 (cellpack fails creating surface) closed by
- fixed: Fixed. Incorrect numpy code to make several copies of a color array.
- 11:26 AM Ticket #451 (cellpack fails creating surface) created by
- […]
Oct 17, 2016:
- 6:50 PM Ticket #441 (cartoon helix tubes choke on 1zik) closed by
- fixed: Fixed in 11680f2. In tube mode, 1zik only has …
- 3:33 PM Ticket #446 (cartoon: changing nucleic style also changes coil) closed by
- fixed: Fixed in fb5dff2. Coil styles were always set whether any …
- 10:07 AM Ticket #450 (Fewer selection outlines) created by
- Begin forwarded message: From: Scooter Morris Subject: Strange …
Oct 13, 2016:
- 5:22 PM Ticket #448 (Info log message highlighted like warnings) closed by
- fixed
- 3:03 PM DeveloperMeetings edited by
- (diff)
- 3:03 PM 2016-10-13 created by
- 11:21 AM Ticket #449 (Volume planes on multiple data display is erratic) created by
- Looks like volume planes command to cycle through planes when applied …
- 9:46 AM Ticket #448 (Info log message highlighted like warnings) created by
- When opening a file the collating log colors both warnings and info …
Oct 11, 2016:
- 7:02 PM Ticket #447 (Transparency command on volumes undone when contour level changes) created by
- The transparency command on volume surface display changes the surface …
- 12:25 PM Ticket #446 (cartoon: changing nucleic style also changes coil) created by
- Width, thickness, cross-section should be separately settable for …
- 9:39 AM Ticket #445 (Traceback when executing a long select command) created by
- Crashed when issuing the following REST command: sel …
Oct 9, 2016:
- 10:04 PM Ticket #444 (Python shell scripts refer to wrong install location) closed by
- fixed: Python scripts are now removed from the application to avoid them …
Oct 7, 2016:
- 12:46 PM Ticket #444 (Python shell scripts refer to wrong install location) created by
- The Python shell script included in Linux ChimeraX in the bin …
Oct 6, 2016:
Oct 5, 2016:
- 4:33 PM Ticket #443 (mmaker error: KeyError: ('<', 'M')) closed by
- fixed: The domain-restricted sequence that was constructed wasn't having its …
- 3:58 PM Ticket #443 (mmaker error: KeyError: ('<', 'M')) created by
- open 3iko del ~/C open ScNup84_7-488_506-726_new.pdb mmaker #1 to …
- 1:53 PM Ticket #442 (Deleting atoms of 3jro causes crash) closed by
- fixed: Fixed. The translation of a min() func from Chimera 1 in its …
- 12:35 PM Ticket #442 (Deleting atoms of 3jro causes crash) created by
- open 3jro del /a:1100-2000 del :100-200 crashes in …
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