Opened 9 years ago
Closed 9 years ago
#451 closed defect (fixed)
cellpack fails creating surface
Reported by: | Greg Couch | Owned by: | Tom Goddard |
---|---|---|---|
Priority: | blocker | Milestone: | |
Component: | Higher-Order Structure | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
Traceback (most recent call last): File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimerax/core/ui/nogui.py", line 186, in execute self._cmd.run(text) File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimerax/core/commands/cli.py", line 2206, in run results.append(ci.function(session, **kw_args)) File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimerax/core/commands/open.py", line 76, in open format=format, name=name, ignore_cache=ignore_cache, **kw) File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimerax/core/fetch.py", line 258, in fetch_from_database models, status = df.fetch(session, id, format=format, ignore_cache=ignore_cache, **kw) File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimerax/core/fetch.py", line 299, in fetch return fetch(session, database_id, ignore_cache=ignore_cache, **kw) File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimerax/cellpack/fetch_cellpack.py", line 23, in fetch_cellpack surf = fetch_autopack(session, path, cellpack_id, database, ignore_cache) File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimerax/cellpack/fetch_cellpack.py", line 99, in fetch_autopack isurf = read_apr.create_surface(session, mesh_path, ingr_name, placements) File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimerax/cellpack/read_apr.py", line 81, in create_surface d.colors = copy_colors(d.colors, len(p)) File "/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimerax/cellpack/read_apr.py", line 94, in copy_colors c[:] = colors ValueError: could not broadcast input array from shape (25,4) into shape (625,4)
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Fixed.
Incorrect numpy code to make several copies of a color array.