Opened 9 years ago

Closed 9 years ago

Last modified 7 years ago

#464 closed defect (duplicate)

mmCIF reader does not assign secondary structure to ensemble models

Reported by: Tom Goddard Owned by: Greg Couch
Priority: major Milestone:
Component: Input/Output Version:
Keywords: Cc: conrad@…, pett@…
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

Opening 5ijn is extremely slow because we compute secondary structure for 7 of the 8 copies in this large assembly.
Apparently the mmcif reader is not copying secondary structure information to all members of the ensemble.

open 5ijn
Model 2.2 (5ijn) has no secondary structure assignments. Running dssp using default settings.
Model 2.3 (5ijn) has no secondary structure assignments. Running dssp using default settings.
Model 2.4 (5ijn) has no secondary structure assignments. Running dssp using default settings.
Model 2.5 (5ijn) has no secondary structure assignments. Running dssp using default settings.
Model 2.6 (5ijn) has no secondary structure assignments. Running dssp using default settings.
Model 2.7 (5ijn) has no secondary structure assignments. Running dssp using default settings.
Model 2.8 (5ijn) has no secondary structure assignments. Running dssp using default settings.
Opened mmCIF data containing 594304 atoms and 593312 bonds

Change History (2)

comment:1 by Greg Couch, 9 years ago

Resolution: duplicate
Status: newclosed

Duplicate of #213

comment:2 by pett, 7 years ago

Component: mmCIF Reader/WriterInput/Output

reducing # of categories, so lumping into I/O category

Note: See TracTickets for help on using tickets.