![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 9 years ago
Closed 9 years ago
#454 closed defect (fixed)
Crash showing cartoon
| Reported by: | Tom Goddard | Owned by: | Conrad Huang |
|---|---|---|---|
| Priority: | major | Milestone: | |
| Component: | Depiction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
Showing a cartoon on the attached 500,000 atom nuclear pore asym unit structure causes an immediate crash in get_polymer_spline().
Attachments (1)
Change History (5)
by , 9 years ago
| Attachment: | asym3b.cif.bz2 added |
|---|
comment:1 by , 9 years ago
comment:2 by , 9 years ago
Mac crash dump
Process: ChimeraX [69303]
Path: /Users/USER/*/ChimeraX.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 0.1.0 (0.1.0.0)
Code Type: X86-64 (Native)
Parent Process: bash [58324]
Responsible: ChimeraX [69303]
User ID: 501
Date/Time: 2016-10-21 19:02:29.559 -0700
OS Version: Mac OS X 10.12 (16A323)
Report Version: 12
Anonymous UUID: ADCA02F2-9A59-6574-CF8F-380125498A20
Sleep/Wake UUID: C57F61AF-6B76-4B8B-B870-E7730DC90E71
Time Awake Since Boot: 2000000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x000000000000004f
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x4f:
-->
TEXT 0000000109881000-0000000109882000 [ 4K] r-x/rwx SM=COW /Users/USER/*/ChimeraX.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fffad4fcdda pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fffad5e7797 pthread_kill + 90
2 libsystem_c.dylib 0x00007fffad4134d7 raise + 26
3 libsystem_platform.dylib 0x00007fffad5dabba _sigtramp + 26
4 ??? 000000000000000000 0 + 0
5 libmolc.dylib 0x000000010ba11b29 residue_polymer_spline + 3305
6 _ctypes.cpython-35m-darwin.so 0x000000010a61f5e7 ffi_call_unix64 + 79 (darwin64.S:79)
7 _ctypes.cpython-35m-darwin.so 0x000000010a61feb9 ffi_call + 969 (x86-ffi64.c:581)
8 _ctypes.cpython-35m-darwin.so 0x000000010a61afc9 _ctypes_callproc + 777 (callproc.c:811)
9 _ctypes.cpython-35m-darwin.so 0x000000010a615110 PyCFuncPtr_call + 1040 (_ctypes.c:3869)
10 org.python.python 0x0000000109897e45 PyObject_Call + 101 (abstract.c:2162)
11 org.python.python 0x000000010995dea0 PyEval_EvalFrameEx + 25424 (ceval.c:4887)
12 org.python.python 0x0000000109962b12 fast_function + 290 (ceval.c:4754)
13 org.python.python 0x000000010995dbb7 PyEval_EvalFrameEx + 24679 (ceval.c:4681)
14 org.python.python 0x0000000109962355 _PyEval_EvalCodeWithName + 3941 (ceval.c:3966)
15 org.python.python 0x0000000109962b85 fast_function + 405 (ceval.c:4769)
16 org.python.python 0x000000010995dbb7 PyEval_EvalFrameEx + 24679 (ceval.c:4681)
17 org.python.python 0x0000000109962355 _PyEval_EvalCodeWithName + 3941 (ceval.c:3966)
18 org.python.python 0x0000000109962b85 fast_function + 405 (ceval.c:4769)
19 org.python.python 0x000000010995dbb7 PyEval_EvalFrameEx + 24679 (ceval.c:4681)
20 org.python.python 0x0000000109962355 _PyEval_EvalCodeWithName + 3941 (ceval.c:3966)
21 org.python.python 0x0000000109962b85 fast_function + 405 (ceval.c:4769)
22 org.python.python 0x000000010995dbb7 PyEval_EvalFrameEx + 24679 (ceval.c:4681)
23 org.python.python 0x0000000109962b12 fast_function + 290 (ceval.c:4754)
24 org.python.python 0x000000010995dbb7 PyEval_EvalFrameEx + 24679 (ceval.c:4681)
25 org.python.python 0x0000000109962b12 fast_function + 290 (ceval.c:4754)
26 org.python.python 0x000000010995dbb7 PyEval_EvalFrameEx + 24679 (ceval.c:4681)
27 org.python.python 0x0000000109962355 _PyEval_EvalCodeWithName + 3941 (ceval.c:3966)
28 org.python.python 0x0000000109962b85 fast_function + 405 (ceval.c:4769)
29 org.python.python 0x000000010995dbb7 PyEval_EvalFrameEx + 24679 (ceval.c:4681)
30 org.python.python 0x0000000109962b12 fast_function + 290 (ceval.c:4754)
31 org.python.python 0x000000010995dbb7 PyEval_EvalFrameEx + 24679 (ceval.c:4681)
32 org.python.python 0x0000000109962b12 fast_function + 290 (ceval.c:4754)
33 org.python.python 0x000000010995dbb7 PyEval_EvalFrameEx + 24679 (ceval.c:4681)
34 org.python.python 0x0000000109962355 _PyEval_EvalCodeWithName + 3941 (ceval.c:3966)
35 org.python.python 0x0000000109957b2e PyEval_EvalCodeEx + 78 (ceval.c:3987)
36 org.python.python 0x00000001098c0edd function_call + 381 (funcobject.c:632)
37 org.python.python 0x0000000109897e45 PyObject_Call + 101 (abstract.c:2162)
38 org.python.python 0x00000001098adb7d method_call + 141 (classobject.c:330)
39 org.python.python 0x0000000109897e45 PyObject_Call + 101 (abstract.c:2162)
40 org.python.python 0x00000001099613c5 PyEval_CallObjectWithKeywords + 165 (ceval.c:4530)
41 QtCore.so 0x000000010c000588 PyQtSlot::call(_object*, _object*) const + 40
42 QtCore.so 0x000000010c000485 PyQtSlot::invoke(void, _object*, void*, bool) const + 341
43 QtCore.so 0x000000010c000e38 PyQtSlotProxy::unislot(void) + 88
44 QtCore.so 0x000000010c000daa PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void) + 58
45 org.qt-project.QtCore 0x000000010c3dd5c6 QMetaObject::activate(QObject*, int, int, void) + 1254
46 QtCore.so 0x000000010bfc65c7 sipQTimer::timerEvent(QTimerEvent*) + 103
47 org.qt-project.QtCore 0x000000010c3d5fb2 QObject::event(QEvent*) + 258
48 QtCore.so 0x000000010bfc6557 sipQTimer::event(QEvent*) + 103
49 org.qt-project.QtWidgets 0x000000010f88ccb6 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 294
50 org.qt-project.QtWidgets 0x000000010f88e1f6 QApplication::notify(QObject*, QEvent*) + 502
51 QtWidgets.so 0x000000010f2e93ef sipQApplication::notify(QObject*, QEvent*) + 127
52 org.qt-project.QtCore 0x000000010c3a7e54 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 164
53 org.qt-project.QtCore 0x000000010c40261a QTimerInfoList::activateTimers() + 1322
54 libqcocoa.dylib 0x0000000118a39a22 QCocoaEventDispatcherPrivate::activateTimersSourceCallback(void*) + 18
55 com.apple.CoreFoundation 0x00007fff9831c581 CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION + 17
56 com.apple.CoreFoundation 0x00007fff982fd907 CFRunLoopDoSources0 + 423
57 com.apple.CoreFoundation 0x00007fff982fce76 CFRunLoopRun + 934
58 com.apple.CoreFoundation 0x00007fff982fc874 CFRunLoopRunSpecific + 420
59 com.apple.HIToolbox 0x00007fff9789cf6c RunCurrentEventLoopInMode + 240
60 com.apple.HIToolbox 0x00007fff9789cda1 ReceiveNextEventCommon + 432
61 com.apple.HIToolbox 0x00007fff9789cbd6 _BlockUntilNextEventMatchingListInModeWithFilter + 71
62 com.apple.AppKit 0x00007fff95f935f5 _DPSNextEvent + 1093
63 com.apple.AppKit 0x00007fff966a38eb -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1637
64 com.apple.AppKit 0x00007fff95f87fbd -[NSApplication run] + 926
65 libqcocoa.dylib 0x0000000118a3a62f QCocoaEventDispatcher::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 2191
66 org.qt-project.QtCore 0x000000010c3a3fe5 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 421
67 org.qt-project.QtCore 0x000000010c3a84c5 QCoreApplication::exec() + 341
68 QtWidgets.so 0x000000010f2e9fb0 meth_QApplication_exec_(_object*, _object*) + 80
69 org.python.python 0x00000001098dfeb5 PyCFunction_Call + 165 (methodobject.c:121)
70 org.python.python 0x000000010995e244 PyEval_EvalFrameEx + 26356 (ceval.c:4655)
71 org.python.python 0x0000000109962b12 fast_function + 290 (ceval.c:4754)
72 org.python.python 0x000000010995dbb7 PyEval_EvalFrameEx + 24679 (ceval.c:4681)
73 org.python.python 0x0000000109962355 _PyEval_EvalCodeWithName + 3941 (ceval.c:3966)
74 org.python.python 0x0000000109962b85 fast_function + 405 (ceval.c:4769)
75 org.python.python 0x000000010995dbb7 PyEval_EvalFrameEx + 24679 (ceval.c:4681)
76 org.python.python 0x0000000109962355 _PyEval_EvalCodeWithName + 3941 (ceval.c:3966)
77 org.python.python 0x0000000109957ad1 PyEval_EvalCode + 81 (ceval.c:777)
78 org.python.python 0x0000000109955310 builtin_exec + 528 (bltinmodule.c:957)
79 org.python.python 0x00000001098dfeb5 PyCFunction_Call + 165 (methodobject.c:121)
80 org.python.python 0x000000010995e244 PyEval_EvalFrameEx + 26356 (ceval.c:4655)
81 org.python.python 0x0000000109962355 _PyEval_EvalCodeWithName + 3941 (ceval.c:3966)
82 org.python.python 0x0000000109962b85 fast_function + 405 (ceval.c:4769)
83 org.python.python 0x000000010995dbb7 PyEval_EvalFrameEx + 24679 (ceval.c:4681)
84 org.python.python 0x0000000109962355 _PyEval_EvalCodeWithName + 3941 (ceval.c:3966)
85 org.python.python 0x0000000109957b2e PyEval_EvalCodeEx + 78 (ceval.c:3987)
86 org.python.python 0x00000001098c0edd function_call + 381 (funcobject.c:632)
87 org.python.python 0x0000000109897e45 PyObject_Call + 101 (abstract.c:2162)
88 org.python.python 0x00000001099a0e83 RunModule + 147 (main.c:208)
89 org.python.python 0x00000001099a088e Py_Main + 2590 (main.c:709)
90 edu.ucsf.cgl.ChimeraX 0x0000000109881e16 main + 278
91 libdyld.dylib 0x00007fffad3ce255 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fffad4fd4e6 workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fffad5e4632 _pthread_wqthread + 1023
2 libsystem_pthread.dylib 0x00007fffad5e4221 start_wqthread + 13
Thread 2:: OGL Profiler
0 libsystem_kernel.dylib 0x00007fffad4f541a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fffad4f4867 mach_msg + 55
2 com.apple.opengl 0x00007fff9d10ad4d glcDebugListener + 302
3 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
4 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
5 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 3:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fffad4f541a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fffad4f4867 mach_msg + 55
2 com.apple.CoreFoundation 0x00007fff982fdba4 CFRunLoopServiceMachPort + 212
3 com.apple.CoreFoundation 0x00007fff982fd021 CFRunLoopRun + 1361
4 com.apple.CoreFoundation 0x00007fff982fc874 CFRunLoopRunSpecific + 420
5 com.apple.AppKit 0x00007fff960dfe9e _NSEventThread + 205
6 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
7 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
8 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fffad4fcf4e select + 10
1 org.qt-project.QtCore 0x000000010c3fef43 qt_safe_select(int, fd_set*, fd_set*, fd_set*, timespec const*) + 547
2 org.qt-project.QtCore 0x000000010c3ffe75 QEventDispatcherUNIXPrivate::doSelect(QFlags<QEventLoop::ProcessEventsFlag>, timespec*) + 709
3 org.qt-project.QtCore 0x000000010c4012b7 QEventDispatcherUNIX::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 231
4 org.qt-project.QtCore 0x000000010c3a3fe5 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 421
5 org.qt-project.Qt.QtWebEngineCore 0x000000011091541a non-virtual thunk to QtWebEngineCore::(anonymous namespace)::MessagePumpForUIQt::Run(base::MessagePump::Delegate*) + 42 (content_browser_client_qt.cpp:135)
6 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
7 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
8 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
9 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
10 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
11 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
12 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 5:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fffad4fe236 poll + 10
1 org.qt-project.Qt.QtWebEngineCore 0x0000000111b0322c poll_dispatch + 92 (poll.c:147)
2 org.qt-project.Qt.QtWebEngineCore 0x0000000111b0209d event_base_loop + 669 (event.c:504)
3 org.qt-project.Qt.QtWebEngineCore 0x0000000111263558 base::MessagePumpLibevent::Run(base::MessagePump::Delegate*) + 440 (message_pump_libevent.cc:260)
4 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
5 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
6 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
7 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
8 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
9 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
10 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 6:: WorkerPool/56323
0 libsystem_kernel.dylib 0x00007fffad4fcc8a psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffad5e59b3 _pthread_cond_wait + 769
2 org.qt-project.Qt.QtWebEngineCore 0x00000001112a6c8b base::ConditionVariable::TimedWait(base::TimeDelta const&) + 91 (condition_variable_posix.cc:110)
3 org.qt-project.Qt.QtWebEngineCore 0x00000001112b91fc base::PosixDynamicThreadPool::WaitForTask() + 188 (worker_pool_posix.cc:178)
4 org.qt-project.Qt.QtWebEngineCore 0x00000001112b96b4 base::(anonymous namespace)::WorkerThread::ThreadMain() + 708 (worker_pool_posix.cc:84)
5 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
6 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
7 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
8 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 7:: WorkerPool/57091
0 libsystem_kernel.dylib 0x00007fffad4fcc8a psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffad5e59b3 _pthread_cond_wait + 769
2 org.qt-project.Qt.QtWebEngineCore 0x00000001112a6c8b base::ConditionVariable::TimedWait(base::TimeDelta const&) + 91 (condition_variable_posix.cc:110)
3 org.qt-project.Qt.QtWebEngineCore 0x00000001112b91fc base::PosixDynamicThreadPool::WaitForTask() + 188 (worker_pool_posix.cc:178)
4 org.qt-project.Qt.QtWebEngineCore 0x00000001112b96b4 base::(anonymous namespace)::WorkerThread::ThreadMain() + 708 (worker_pool_posix.cc:84)
5 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
6 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
7 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
8 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 8:: Chrome_DBThread
0 libsystem_kernel.dylib 0x00007fffad4f541a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fffad4f4867 mach_msg + 55
2 com.apple.CoreFoundation 0x00007fff982fdba4 CFRunLoopServiceMachPort + 212
3 com.apple.CoreFoundation 0x00007fff982fd021 CFRunLoopRun + 1361
4 com.apple.CoreFoundation 0x00007fff982fc874 CFRunLoopRunSpecific + 420
5 org.qt-project.Qt.QtWebEngineCore 0x000000011126464f base::MessagePumpCFRunLoop::DoRun(base::MessagePump::Delegate*) + 79 (message_pump_mac.mm:552)
6 org.qt-project.Qt.QtWebEngineCore 0x00000001112640a4 base::MessagePumpCFRunLoopBase::Run(base::MessagePump::Delegate*) + 100 (message_pump_mac.mm:244)
7 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
8 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
9 org.qt-project.Qt.QtWebEngineCore 0x0000000111fa9148 content::BrowserThreadImpl::DBThreadRun(base::MessageLoop*) + 24 (browser_thread_impl.cc:178)
10 org.qt-project.Qt.QtWebEngineCore 0x0000000111fa9496 content::BrowserThreadImpl::Run(base::MessageLoop*) + 102 (browser_thread_impl.cc:236)
11 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
12 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
13 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
14 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
15 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 9:: Chrome_FileThread
0 libsystem_kernel.dylib 0x00007fffad4fe236 poll + 10
1 org.qt-project.Qt.QtWebEngineCore 0x0000000111b0322c poll_dispatch + 92 (poll.c:147)
2 org.qt-project.Qt.QtWebEngineCore 0x0000000111b0209d event_base_loop + 669 (event.c:504)
3 org.qt-project.Qt.QtWebEngineCore 0x0000000111263558 base::MessagePumpLibevent::Run(base::MessagePump::Delegate*) + 440 (message_pump_libevent.cc:260)
4 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
5 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
6 org.qt-project.Qt.QtWebEngineCore 0x0000000111fa91c8 content::BrowserThreadImpl::FileThreadRun(base::MessageLoop*) + 24 (browser_thread_impl.cc:185)
7 org.qt-project.Qt.QtWebEngineCore 0x0000000111fa94a6 content::BrowserThreadImpl::Run(base::MessageLoop*) + 118 (browser_thread_impl.cc:238)
8 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
9 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
10 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
11 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
12 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 10:: Chrome_FileUserBlockingThread
0 libsystem_kernel.dylib 0x00007fffad4f541a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fffad4f4867 mach_msg + 55
2 com.apple.CoreFoundation 0x00007fff982fdba4 CFRunLoopServiceMachPort + 212
3 com.apple.CoreFoundation 0x00007fff982fd021 CFRunLoopRun + 1361
4 com.apple.CoreFoundation 0x00007fff982fc874 CFRunLoopRunSpecific + 420
5 org.qt-project.Qt.QtWebEngineCore 0x000000011126464f base::MessagePumpCFRunLoop::DoRun(base::MessagePump::Delegate*) + 79 (message_pump_mac.mm:552)
6 org.qt-project.Qt.QtWebEngineCore 0x00000001112640a4 base::MessagePumpCFRunLoopBase::Run(base::MessagePump::Delegate*) + 100 (message_pump_mac.mm:244)
7 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
8 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
9 org.qt-project.Qt.QtWebEngineCore 0x0000000111fa9248 content::BrowserThreadImpl::FileUserBlockingThreadRun(base::MessageLoop*) + 24 (browser_thread_impl.cc:192)
10 org.qt-project.Qt.QtWebEngineCore 0x0000000111fa94b3 content::BrowserThreadImpl::Run(base::MessageLoop*) + 131 (browser_thread_impl.cc:240)
11 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
12 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
13 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
14 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
15 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 11:: Chrome_ProcessLauncherThread
0 libsystem_kernel.dylib 0x00007fffad4f541a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fffad4f4867 mach_msg + 55
2 com.apple.CoreFoundation 0x00007fff982fdba4 CFRunLoopServiceMachPort + 212
3 com.apple.CoreFoundation 0x00007fff982fd021 CFRunLoopRun + 1361
4 com.apple.CoreFoundation 0x00007fff982fc874 CFRunLoopRunSpecific + 420
5 org.qt-project.Qt.QtWebEngineCore 0x000000011126464f base::MessagePumpCFRunLoop::DoRun(base::MessagePump::Delegate*) + 79 (message_pump_mac.mm:552)
6 org.qt-project.Qt.QtWebEngineCore 0x00000001112640a4 base::MessagePumpCFRunLoopBase::Run(base::MessagePump::Delegate*) + 100 (message_pump_mac.mm:244)
7 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
8 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
9 org.qt-project.Qt.QtWebEngineCore 0x0000000111fa92c8 content::BrowserThreadImpl::ProcessLauncherThreadRun(base::MessageLoop*) + 24 (browser_thread_impl.cc:199)
10 org.qt-project.Qt.QtWebEngineCore 0x0000000111fa94c0 content::BrowserThreadImpl::Run(base::MessageLoop*) + 144 (browser_thread_impl.cc:242)
11 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
12 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
13 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
14 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
15 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 12:: Chrome_CacheThread
0 libsystem_kernel.dylib 0x00007fffad4fe236 poll + 10
1 org.qt-project.Qt.QtWebEngineCore 0x0000000111b0322c poll_dispatch + 92 (poll.c:147)
2 org.qt-project.Qt.QtWebEngineCore 0x0000000111b0209d event_base_loop + 669 (event.c:504)
3 org.qt-project.Qt.QtWebEngineCore 0x0000000111263540 base::MessagePumpLibevent::Run(base::MessagePump::Delegate*) + 416 (message_pump_libevent.cc:271)
4 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
5 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
6 org.qt-project.Qt.QtWebEngineCore 0x0000000111fa9348 content::BrowserThreadImpl::CacheThreadRun(base::MessageLoop*) + 24 (browser_thread_impl.cc:206)
7 org.qt-project.Qt.QtWebEngineCore 0x0000000111fa94cd content::BrowserThreadImpl::Run(base::MessageLoop*) + 157 (browser_thread_impl.cc:244)
8 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
9 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
10 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
11 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
12 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 13:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fffad4fe236 poll + 10
1 org.qt-project.Qt.QtWebEngineCore 0x0000000111b0322c poll_dispatch + 92 (poll.c:147)
2 org.qt-project.Qt.QtWebEngineCore 0x0000000111b0209d event_base_loop + 669 (event.c:504)
3 org.qt-project.Qt.QtWebEngineCore 0x0000000111263540 base::MessagePumpLibevent::Run(base::MessagePump::Delegate*) + 416 (message_pump_libevent.cc:271)
4 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
5 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
6 org.qt-project.Qt.QtWebEngineCore 0x0000000111fa93c8 content::BrowserThreadImpl::IOThreadRun(base::MessageLoop*) + 24 (browser_thread_impl.cc:212)
7 org.qt-project.Qt.QtWebEngineCore 0x0000000111fa94da content::BrowserThreadImpl::Run(base::MessageLoop*) + 170 (browser_thread_impl.cc:246)
8 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
9 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
10 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
11 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
12 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 14:: IndexedDB
0 libsystem_kernel.dylib 0x00007fffad4f541a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fffad4f4867 mach_msg + 55
2 com.apple.CoreFoundation 0x00007fff982fdba4 CFRunLoopServiceMachPort + 212
3 com.apple.CoreFoundation 0x00007fff982fd021 CFRunLoopRun + 1361
4 com.apple.CoreFoundation 0x00007fff982fc874 CFRunLoopRunSpecific + 420
5 org.qt-project.Qt.QtWebEngineCore 0x000000011126464f base::MessagePumpCFRunLoop::DoRun(base::MessagePump::Delegate*) + 79 (message_pump_mac.mm:552)
6 org.qt-project.Qt.QtWebEngineCore 0x00000001112640a4 base::MessagePumpCFRunLoopBase::Run(base::MessagePump::Delegate*) + 100 (message_pump_mac.mm:244)
7 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
8 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
9 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
10 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
11 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
12 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
13 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 15:: CompositorTileWorker1/73731
0 libsystem_kernel.dylib 0x00007fffad4fcc8a psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffad5e597a _pthread_cond_wait + 712
2 org.qt-project.Qt.QtWebEngineCore 0x0000000110a5ab29 cc::TaskGraphRunner::Run() + 73 (task_graph_runner.cc:362)
3 org.qt-project.Qt.QtWebEngineCore 0x00000001112b6ead base::SimpleThread::ThreadMain() + 125 (simple_thread.cc:67)
4 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
5 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
6 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
7 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 16:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fffad4f541a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fffad4f4867 mach_msg + 55
2 com.apple.CoreFoundation 0x00007fff982fdba4 CFRunLoopServiceMachPort + 212
3 com.apple.CoreFoundation 0x00007fff982fd021 CFRunLoopRun + 1361
4 com.apple.CoreFoundation 0x00007fff982fc874 CFRunLoopRunSpecific + 420
5 org.qt-project.Qt.QtWebEngineCore 0x000000011126464f base::MessagePumpCFRunLoop::DoRun(base::MessagePump::Delegate*) + 79 (message_pump_mac.mm:552)
6 org.qt-project.Qt.QtWebEngineCore 0x00000001112640a4 base::MessagePumpCFRunLoopBase::Run(base::MessagePump::Delegate*) + 100 (message_pump_mac.mm:244)
7 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
8 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
9 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
10 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
11 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
12 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
13 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 17:: AudioThread
0 libsystem_kernel.dylib 0x00007fffad4f541a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fffad4f4867 mach_msg + 55
2 com.apple.CoreFoundation 0x00007fff982fdba4 CFRunLoopServiceMachPort + 212
3 com.apple.CoreFoundation 0x00007fff982fd021 CFRunLoopRun + 1361
4 com.apple.CoreFoundation 0x00007fff982fc874 CFRunLoopRunSpecific + 420
5 org.qt-project.Qt.QtWebEngineCore 0x000000011126464f base::MessagePumpCFRunLoop::DoRun(base::MessagePump::Delegate*) + 79 (message_pump_mac.mm:552)
6 org.qt-project.Qt.QtWebEngineCore 0x00000001112640a4 base::MessagePumpCFRunLoopBase::Run(base::MessagePump::Delegate*) + 100 (message_pump_mac.mm:244)
7 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
8 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
9 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
10 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
11 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
12 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
13 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 18:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fffad4fe236 poll + 10
1 org.qt-project.Qt.QtWebEngineCore 0x0000000111b0322c poll_dispatch + 92 (poll.c:147)
2 org.qt-project.Qt.QtWebEngineCore 0x0000000111b0209d event_base_loop + 669 (event.c:504)
3 org.qt-project.Qt.QtWebEngineCore 0x0000000111263558 base::MessagePumpLibevent::Run(base::MessagePump::Delegate*) + 440 (message_pump_libevent.cc:260)
4 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
5 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
6 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
7 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
8 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
9 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
10 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 19:: BrowserBlockingWorker1/79023
0 libsystem_kernel.dylib 0x00007fffad4fcc8a psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffad5e597a _pthread_cond_wait + 712
2 org.qt-project.Qt.QtWebEngineCore 0x00000001112b48ed base::SequencedWorkerPool::Inner::ThreadLoop(base::SequencedWorkerPool::Worker*) + 2381 (sequenced_worker_pool.cc:845)
3 org.qt-project.Qt.QtWebEngineCore 0x00000001112b3f5e base::SequencedWorkerPool::Worker::Run() + 126 (ref_counted.h:317)
4 org.qt-project.Qt.QtWebEngineCore 0x00000001112b6ead base::SimpleThread::ThreadMain() + 125 (simple_thread.cc:67)
5 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
6 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
7 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
8 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 20:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fffad4fcf4e select + 10
1 org.qt-project.QtCore 0x000000010c3fef43 qt_safe_select(int, fd_set*, fd_set*, fd_set*, timespec const*) + 547
2 org.qt-project.QtCore 0x000000010c3ffe75 QEventDispatcherUNIXPrivate::doSelect(QFlags<QEventLoop::ProcessEventsFlag>, timespec*) + 709
3 org.qt-project.QtCore 0x000000010c4012b7 QEventDispatcherUNIX::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 231
4 org.qt-project.QtCore 0x000000010c3a3fe5 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 421
5 org.qt-project.Qt.QtWebEngineCore 0x000000011091541a non-virtual thunk to QtWebEngineCore::(anonymous namespace)::MessagePumpForUIQt::Run(base::MessagePump::Delegate*) + 42 (content_browser_client_qt.cpp:135)
6 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
7 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
8 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
9 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
10 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
11 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
12 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 21:: handle-watcher-thread
0 libsystem_kernel.dylib 0x00007fffad4fcc8a psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffad5e597a _pthread_cond_wait + 712
2 org.qt-project.Qt.QtWebEngineCore 0x0000000112e1cec8 mojo::system::Waiter::Wait(unsigned long long, unsigned int*) + 264 (waiter.cc:63)
3 org.qt-project.Qt.QtWebEngineCore 0x0000000112e093d9 mojo::system::Core::WaitManyInternal(unsigned int const*, unsigned int const*, unsigned int, unsigned long long, unsigned int*, mojo::system::HandleSignalsState*) + 489 (core.cc:600)
4 org.qt-project.Qt.QtWebEngineCore 0x0000000112e096b6 mojo::system::Core::WaitMany(mojo::system::UserPointer<unsigned int const>, mojo::system::UserPointer<unsigned int const>, unsigned int, unsigned long long, mojo::system::UserPointer<unsigned int>, mojo::system::UserPointer<MojoHandleSignalsState>) + 358 (core.cc:177)
5 org.qt-project.Qt.QtWebEngineCore 0x0000000112e00bb6 MojoWaitMany + 70 (entrypoints.cc:39)
6 org.qt-project.Qt.QtWebEngineCore 0x0000000110d236a2 mojo::common::MessagePumpMojo::DoInternalWork(mojo::common::MessagePumpMojo::RunState const&, bool) + 914 (message_pump_mojo.cc:178)
7 org.qt-project.Qt.QtWebEngineCore 0x0000000110d231a3 mojo::common::MessagePumpMojo::DoRunLoop(mojo::common::MessagePumpMojo::RunState*, base::MessagePump::Delegate*) + 51 (message_pump_mojo.cc:150)
8 org.qt-project.Qt.QtWebEngineCore 0x0000000110d2312a mojo::common::MessagePumpMojo::Run(base::MessagePump::Delegate*) + 266 (lock.h:23)
9 org.qt-project.Qt.QtWebEngineCore 0x000000011129798f base::RunLoop::Run() + 95 (run_loop.cc:56)
10 org.qt-project.Qt.QtWebEngineCore 0x0000000111287f7d base::MessageLoop::Run() + 29 (message_loop.cc:288)
11 org.qt-project.Qt.QtWebEngineCore 0x00000001112b78e1 base::Thread::ThreadMain() + 225 (lock.h:23)
12 org.qt-project.Qt.QtWebEngineCore 0x00000001112b384b base::(anonymous namespace)::ThreadFunc(void*) + 171 (platform_thread_posix.cc:78)
13 libsystem_pthread.dylib 0x00007fffad5e4abb _pthread_body + 180
14 libsystem_pthread.dylib 0x00007fffad5e4a07 _pthread_start + 286
15 libsystem_pthread.dylib 0x00007fffad5e4231 thread_start + 13
Thread 22:
0 libsystem_kernel.dylib 0x00007fffad4fd4e6 workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fffad5e4632 _pthread_wqthread + 1023
2 libsystem_pthread.dylib 0x00007fffad5e4221 start_wqthread + 13
Thread 23:
0 libsystem_pthread.dylib 0x00007fffad5e4214 start_wqthread + 0
1 ??? 0x00007fc0b26bcc70 0 + 140465603857520
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000000000000b rcx: 0x0000000109c80a58 rdx: 0x0000000000000000
rdi: 0x000000000000080f rsi: 0x000000000000000b rbp: 0x0000000109c80a80 rsp: 0x0000000109c80a58
r8: 0x0000000109c80f48 r9: 0x0000000000000656 r10: 0x0000000000000000 r11: 0x0000000000000287
r12: 0x0000000000000112 r13: 0x0000000128ae6f98 r14: 0x00007fffb60d13c0 r15: 0xffffffffffffffff
rip: 0x00007fffad4fcdda rfl: 0x0000000000000286 cr2: 0x000000014011a000
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
0x109881000 - 0x109881ff3 +edu.ucsf.cgl.ChimeraX (0.1.0 - 0.1.0.0) <A08A3935-FB6A-311B-A1F8-E813D5CEED56> /Users/USER/*/ChimeraX.app/Contents/MacOS/ChimeraX
0x10988a000 - 0x109a37fff +org.python.python (3.5.1, [c] 2001-2015 Python Software Foundation. - 3.5.1) <301CC432-9B20-360B-8658-7192268764B6> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/Python
0x109e52000 - 0x109e53ffb +_heapq.cpython-35m-darwin.so (0) <719D2E46-D328-3CF2-A6A8-812480933E86> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_heapq.cpython-35m-darwin.so
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0x10a045000 - 0x10a045ffb +grp.cpython-35m-darwin.so (0) <6838E970-2CF6-3FB6-9922-AC9548E894C2> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/grp.cpython-35m-darwin.so
0x10a088000 - 0x10a089ffb +_bz2.cpython-35m-darwin.so (0) <C2B64ED3-9486-367F-A18B-AB5C1BB0454C> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_bz2.cpython-35m-darwin.so
0x10a08d000 - 0x10a08efff +_posixsubprocess.cpython-35m-darwin.so (0) <291C7D95-73C9-3850-8029-20E9EBCFE445> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_posixsubprocess.cpython-35m-darwin.so
0x10a092000 - 0x10a094ff7 +select.cpython-35m-darwin.so (0) <21701ED4-AF20-38A1-9308-6DE895598242> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/select.cpython-35m-darwin.so
0x10a09a000 - 0x10a09eff7 +math.cpython-35m-darwin.so (0) <6FEFD6D2-C1C4-3189-B352-520569B4F803> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/math.cpython-35m-darwin.so
0x10a0e5000 - 0x10a0e8ff3 +binascii.cpython-35m-darwin.so (0) <6ABAFD4B-B792-32D4-8842-8851CE9185FC> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/binascii.cpython-35m-darwin.so
0x10a0ec000 - 0x10a0ffff3 +libz.1.dylib (0) <F3898BAB-7C49-36B1-A234-A39101FAB513> /Users/USER/*/libz.1.dylib
0x10a103000 - 0x10a106ff7 +zlib.cpython-35m-darwin.so (0) <CEDF01FB-672E-3132-AC59-124CD9ABD716> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/zlib.cpython-35m-darwin.so
0x10a14b000 - 0x10a154fff +_socket.cpython-35m-darwin.so (0) <B29764BC-8489-3764-83B8-7F6C39A08AAD> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_socket.cpython-35m-darwin.so
0x10a160000 - 0x10a171ffb +_pickle.cpython-35m-darwin.so (0) <9E7854A0-78F3-3A26-BB0C-8DB4E752DBD0> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_pickle.cpython-35m-darwin.so
0x10a2fd000 - 0x10a308ff7 +_datetime.cpython-35m-darwin.so (0) <C8EB9E9C-8FED-3060-A9F4-E1798FC822F4> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_datetime.cpython-35m-darwin.so
0x10a313000 - 0x10a33bff3 +pyexpat.cpython-35m-darwin.so (0) <4740A134-3F99-358D-8D9C-3EF8FB63F4D7> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/pyexpat.cpython-35m-darwin.so
0x10a44f000 - 0x10a450ffb +_hashlib.cpython-35m-darwin.so (0) <97D38830-9DF1-32D6-A591-4BD6E75A2838> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_hashlib.cpython-35m-darwin.so
0x10a454000 - 0x10a455fff +_random.cpython-35m-darwin.so (0) <34A2C504-72F2-33A1-89B2-7D31849B081C> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_random.cpython-35m-darwin.so
0x10a498000 - 0x10a4a3ffb +parser.cpython-35m-darwin.so (0) <FFA6FF31-7D76-3278-9B95-263CF8994F43> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/parser.cpython-35m-darwin.so
0x10a568000 - 0x10a569ffb +termios.cpython-35m-darwin.so (0) <BC10F1B9-F1CF-3832-864D-1FC6CF638D20> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/termios.cpython-35m-darwin.so
0x10a56e000 - 0x10a573ff3 +_json.cpython-35m-darwin.so (0) <D178BE6F-AB32-31C9-B97A-5DA34183A7CE> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_json.cpython-35m-darwin.so
0x10a5b8000 - 0x10a5c3ffb +_ssl.cpython-35m-darwin.so (0) <6FD0083D-0451-3166-8093-6C67FC010BAE> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_ssl.cpython-35m-darwin.so
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0x7fffac772000 - 0x7fffac788ff7 libmarisa.dylib (5) <2183D484-032D-3DE5-8984-3A14006E034E> /usr/lib/libmarisa.dylib
0x7fffac789000 - 0x7fffaca32fff libmecabra.dylib (744) <545EDC2D-22BB-3E8F-BFD3-921447581D9F> /usr/lib/libmecabra.dylib
0x7fffaca65000 - 0x7fffacaddffb libnetwork.dylib (856.1.8) <30FC3C60-CCA9-3E2B-80AA-DE53F5762374> /usr/lib/libnetwork.dylib
0x7fffacade000 - 0x7fffaceb3127 libobjc.A.dylib (706) <47104A1B-13E8-369F-BC36-27FF465809FD> /usr/lib/libobjc.A.dylib
0x7fffaceb6000 - 0x7fffacebafff libpam.2.dylib (21) <352F8FF6-2248-3594-B357-8D031DEFB06C> /usr/lib/libpam.2.dylib
0x7fffacebb000 - 0x7fffaceebff7 libpcap.A.dylib (67) <450DB888-2C0C-3085-A5F1-69324DFE902C> /usr/lib/libpcap.A.dylib
0x7fffacf09000 - 0x7fffacf25ffb libresolv.9.dylib (64) <A244AE4C-00B0-396C-98FF-97FE4DB3DA30> /usr/lib/libresolv.9.dylib
0x7fffacf26000 - 0x7fffacf5ffff libsandbox.1.dylib (592.1.3) <0024D751-23D8-35DF-87CF-72E489DA2F9F> /usr/lib/libsandbox.1.dylib
0x7fffacf73000 - 0x7fffacf74ff3 libspindump.dylib (228) <F80FAB75-D656-3FDA-8753-D3D6771B17E6> /usr/lib/libspindump.dylib
0x7fffacf75000 - 0x7fffad0b6ffb libsqlite3.dylib (252) <A531C105-64D7-37C0-B999-9320047B71C5> /usr/lib/libsqlite3.dylib
0x7fffad0d9000 - 0x7fffad111ff3 libssl.0.9.8.dylib (64) <CCE69718-2965-3E28-A886-41C79EB94C67> /usr/lib/libssl.0.9.8.dylib
0x7fffad1a7000 - 0x7fffad1b4fff libxar.1.dylib (354) <AAFCF321-8100-3622-880B-9661DCA35D69> /usr/lib/libxar.1.dylib
0x7fffad1b8000 - 0x7fffad2a7ffb libxml2.2.dylib (30.11) <26676155-64CE-323F-B73C-AD77AF5982E8> /usr/lib/libxml2.2.dylib
0x7fffad2a8000 - 0x7fffad2d1fff libxslt.1.dylib (15.8) <FFF5DD45-F544-34B2-BE3C-DB877DC60081> /usr/lib/libxslt.1.dylib
0x7fffad2d2000 - 0x7fffad2e3ff3 libz.1.dylib (67) <46E3FFA2-4328-327A-8D34-A03E20BFFB8E> /usr/lib/libz.1.dylib
0x7fffad2f2000 - 0x7fffad2f6ff7 libcache.dylib (79) <84E55656-FDA9-3B29-9E4F-BE31B2C0AA3C> /usr/lib/system/libcache.dylib
0x7fffad2f7000 - 0x7fffad301fff libcommonCrypto.dylib (60092.1.2) <79F738D8-0AD7-3DEA-AF80-E0F8B90B74E3> /usr/lib/system/libcommonCrypto.dylib
0x7fffad302000 - 0x7fffad309fff libcompiler_rt.dylib (62) <486BDE52-81B4-3446-BD72-23977CAE556F> /usr/lib/system/libcompiler_rt.dylib
0x7fffad30a000 - 0x7fffad312fff libcopyfile.dylib (138) <0DA49B77-56EC-362D-98FF-FA78CFD986D6> /usr/lib/system/libcopyfile.dylib
0x7fffad313000 - 0x7fffad395ff3 libcorecrypto.dylib (442.1.3) <1CA8B679-810E-3C04-945A-4AC19372CDC7> /usr/lib/system/libcorecrypto.dylib
0x7fffad396000 - 0x7fffad3c8fff libdispatch.dylib (703.1.4) <12B1D95B-283D-325D-85AB-29A2FFD36987> /usr/lib/system/libdispatch.dylib
0x7fffad3c9000 - 0x7fffad3ceff3 libdyld.dylib (421.1) <CDFBDC9C-418C-369D-B433-F64B0630E640> /usr/lib/system/libdyld.dylib
0x7fffad3cf000 - 0x7fffad3cfffb libkeymgr.dylib (28) <09CD7CA6-46D2-3A9F-B9F1-7C4CA5CA0D68> /usr/lib/system/libkeymgr.dylib
0x7fffad3d0000 - 0x7fffad3dcffb libkxld.dylib (3789.1.32) <48BDBE7F-AAE6-3050-9017-6959051CF16A> /usr/lib/system/libkxld.dylib
0x7fffad3dd000 - 0x7fffad3ddfff liblaunch.dylib (972.1.5) <DC31FDEA-FD81-335E-BAA8-5A7395D20772> /usr/lib/system/liblaunch.dylib
0x7fffad3de000 - 0x7fffad3e3fff libmacho.dylib (894) <1EAE5ADD-490C-3B1F-9F97-447BA8E0E90F> /usr/lib/system/libmacho.dylib
0x7fffad3e4000 - 0x7fffad3e6ff3 libquarantine.dylib (85) <78EF62D8-C890-3FC0-937A-C2FD8CEF8992> /usr/lib/system/libquarantine.dylib
0x7fffad3e7000 - 0x7fffad3e8ffb libremovefile.dylib (45) <C4FC07FF-ED86-382E-B06F-33C34718080C> /usr/lib/system/libremovefile.dylib
0x7fffad3e9000 - 0x7fffad401ff7 libsystem_asl.dylib (349.1.1) <F0987490-8427-367F-B302-A05A7D61FEBF> /usr/lib/system/libsystem_asl.dylib
0x7fffad402000 - 0x7fffad402ff7 libsystem_blocks.dylib (67) <B8C3701D-5A91-3D35-999D-2DC8D5393525> /usr/lib/system/libsystem_blocks.dylib
0x7fffad403000 - 0x7fffad490fe7 libsystem_c.dylib (1158.1.2) <5F260836-48E4-3F57-8553-62D2DA228A1F> /usr/lib/system/libsystem_c.dylib
0x7fffad491000 - 0x7fffad494ffb libsystem_configuration.dylib (888.1.2) <67BB9D8B-2430-38AD-81A7-F0EC924B2590> /usr/lib/system/libsystem_configuration.dylib
0x7fffad495000 - 0x7fffad498fff libsystem_coreservices.dylib (41.1) <11F22E6C-0DCB-3699-A4F0-C99E301E56E9> /usr/lib/system/libsystem_coreservices.dylib
0x7fffad499000 - 0x7fffad4b1ffb libsystem_coretls.dylib (121.1.1) <8F7E9B12-400D-3276-A9C5-4546B0258554> /usr/lib/system/libsystem_coretls.dylib
0x7fffad4b2000 - 0x7fffad4b8fff libsystem_dnssd.dylib (765.1.2) <C5FF2025-C60B-39C6-B205-6BF1BC51D1B3> /usr/lib/system/libsystem_dnssd.dylib
0x7fffad4b9000 - 0x7fffad4e2fff libsystem_info.dylib (503) <C686B834-5E7D-382C-AF6E-44AB78EE83E2> /usr/lib/system/libsystem_info.dylib
0x7fffad4e3000 - 0x7fffad505ff7 libsystem_kernel.dylib (3789.1.32) <5C68A0D7-C3C9-3E52-B983-EDE9A28AB6FC> /usr/lib/system/libsystem_kernel.dylib
0x7fffad506000 - 0x7fffad54dfe7 libsystem_m.dylib (3121.4) <E3370D16-EBAA-3C7F-AC56-2D6EAD7DB0A4> /usr/lib/system/libsystem_m.dylib
0x7fffad54e000 - 0x7fffad56cff7 libsystem_malloc.dylib (116) <3DD17B88-B7A4-38B9-9E95-AB88E1C3B647> /usr/lib/system/libsystem_malloc.dylib
0x7fffad56d000 - 0x7fffad5c3fff libsystem_network.dylib (856.1.8) <A8973360-956A-33BF-9971-14D59C84E0D1> /usr/lib/system/libsystem_network.dylib
0x7fffad5c4000 - 0x7fffad5cdff3 libsystem_networkextension.dylib (563.1.11) <1C551832-9360-36DD-A7BA-52B55A171720> /usr/lib/system/libsystem_networkextension.dylib
0x7fffad5ce000 - 0x7fffad5d7ffb libsystem_notify.dylib (165) <AF77D471-6B13-36BA-B144-7E7DDB9DBA9F> /usr/lib/system/libsystem_notify.dylib
0x7fffad5d8000 - 0x7fffad5e0fe7 libsystem_platform.dylib (126.1.2) <884DDF42-3CAE-334A-82CE-965617130FB1> /usr/lib/system/libsystem_platform.dylib
0x7fffad5e1000 - 0x7fffad5ebfff libsystem_pthread.dylib (218.1.3) <050AE77B-4F4B-334A-A5BA-CF0D10AF5304> /usr/lib/system/libsystem_pthread.dylib
0x7fffad5ec000 - 0x7fffad5effff libsystem_sandbox.dylib (592.1.3) <90FEF628-316D-3F84-9EF4-F7F510A4FBBB> /usr/lib/system/libsystem_sandbox.dylib
0x7fffad5f0000 - 0x7fffad5f1fff libsystem_secinit.dylib (24) <A54B8FEF-E792-3C54-8E0B-E80A376662F2> /usr/lib/system/libsystem_secinit.dylib
0x7fffad5f2000 - 0x7fffad5f9fff libsystem_symptoms.dylib (532.1.1) <B26F656E-94F9-3834-9B03-51C4FF11D1BF> /usr/lib/system/libsystem_symptoms.dylib
0x7fffad5fa000 - 0x7fffad61aff7 libsystem_trace.dylib (518.1.16) <C3CDF7BC-CA3D-34F5-ADF8-46AAAB0B47F8> /usr/lib/system/libsystem_trace.dylib
0x7fffad61b000 - 0x7fffad620ffb libunwind.dylib (35.3) <9F7C2AD8-A9A7-3DE4-828D-B0F0F166AAA0> /usr/lib/system/libunwind.dylib
0x7fffad621000 - 0x7fffad64aff7 libxpc.dylib (972.1.5) <2A901937-48E1-3BF2-83F1-2431156D82B7> /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 24
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 4981699
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=467.8M resident=0K(0%) swapped_out_or_unallocated=467.8M(100%)
Writable regions: Total=848.2M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=848.2M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 3
Activity Tracing 256K 2
CG backing stores 7900K 7
CG image 44K 10
CoreAnimation 72K 12
CoreUI image data 1188K 14
CoreUI image file 156K 4
Dispatch continuations 16.0M 2
Foundation 4K 2
Kernel Alloc Once 8K 2
MALLOC 746.3M 95
MALLOC guard page 48K 10
MALLOC_LARGE (reserved) 384K 2 reserved VM address space (unallocated)
Memory Tag 242 12K 2
OpenGL GLSL 256K 4
STACK GUARD 92K 24
Stack 20.0M 25
Stack Guard 55.7M 2
VM_ALLOCATE 39.1M 86
DATA 40.0M 351
GLSLBUILTINS 2588K 2
IMAGE 528K 2
LINKEDIT 181.1M 104
TEXT 286.7M 336
UNICODE 556K 2
mapped file 76.0M 27
shared memory 16.3M 12
=========== ======= =======
TOTAL 1.5G 1117
TOTAL, minus reserved VM space 1.5G 1117
comment:3 by , 9 years ago
This ribbon crash is for the nuclear pore model I plan to show at the site visit. It is difficult to get the demo working with this crash. Hope it can be fixed soon.
comment:4 by , 9 years ago
| Resolution: | → fixed |
|---|---|
| Status: | new → closed |
Should be fixed in 667a8fa. Was not careful enough when guide atoms are missing when using peptide orientation for cartoons.
open asym3b.cif
cartoon
Fatal Python error: Segmentation fault
Current thread 0x00007fffb60d13c0 (most recent call first):
Segmentation fault: 11