Opened 4 years ago

Closed 4 years ago

Last modified 4 years ago

#4952 closed defect (can't reproduce)

Unknown crash

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Core Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process:               ChimeraX [61029]
Path:                  /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Identifier:            edu.ucsf.cgl.ChimeraX
Version:               1.2.5 (1.2.5.0)
Code Type:             X86-64 (Translated)
Parent Process:        ??? [1]
Responsible:           ChimeraX [61029]
User ID:               501

Date/Time:             2021-07-21 23:06:50.123 +0200
OS Version:            macOS 11.3.1 (20E241)
Report Version:        12
Anonymous UUID:        32470D91-6490-21BB-3F2A-E4AB6DD19D0F

Sleep/Wake UUID:       EB34DDEE-900B-4D86-A0BD-B9AA55F0AF11

Time Awake Since Boot: 1900000 seconds
Time Since Wake:       51000 seconds

System Integrity Protection: enabled

Crashed Thread:        0  CrBrowserMain  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_BAD_ACCESS (SIGBUS)
Exception Codes:       KERN_MEMORY_ERROR at 0x0000000147421020
Exception Note:        EXC_CORPSE_NOTIFY

VM Regions Near 0x147421020:
    shared memory               1472cf000-1472d7000    [   32K] r--/r-- SM=SHM  
--> mapped file                 1472d7000-147446000    [ 1468K] r-x/rwx SM=COW  Object_id=21370005
    mapped file                 147446000-14745e000    [   96K] rw-/rwx SM=COW  Object_id=22572f05

Thread 0 Crashed:: CrBrowserMain  Dispatch queue: com.apple.main-thread
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff20317946 __pthread_kill + 10
2   libsystem_c.dylib             	0x00007fff2022abe5 raise + 26
3   libsystem_platform.dylib      	0x00007fff2038bd7d _sigtramp + 29
4   select.cpython-38-darwin.so   	000000000000000000 0 + 0
5   ???                           	0x0000600001c78ad0 ???

Thread 1:: com.apple.rosetta.exceptionserver
0   runtime                       	0x00007ffdffc12878 0x7ffdffc11000 + 6264
1   runtime                       	0x00007ffdffc1cd70 0x7ffdffc11000 + 48496
2   runtime                       	0x00007ffdffc1da40 0x7ffdffc11000 + 51776

Thread 2:
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff20313d4e __psynch_cvwait + 10
2   ???                           	0x000000010ac9527b ???
3   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 3:
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff20313d4e __psynch_cvwait + 10
2   ???                           	0x000000010ac9527b ???
3   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 4:
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff20313d4e __psynch_cvwait + 10
2   ???                           	0x000000010ac9527b ???
3   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 5:
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff20313d4e __psynch_cvwait + 10
2   ???                           	0x000000010ac9527b ???
3   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 6:
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff20313d4e __psynch_cvwait + 10
2   ???                           	0x000000010ac9527b ???
3   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 7:
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff20313d4e __psynch_cvwait + 10
2   ???                           	0x000000010ac9527b ???
3   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 8:
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff20313d4e __psynch_cvwait + 10
2   ???                           	0x000000010ac9527b ???
3   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 9:: ThreadPoolServiceThread
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031a1ea kevent64 + 10
2   ???                           	0x000000012a941cc7 ???
3   ???                           	0x000000012a8ca62b ???
4   ???                           	0x000000012a88e7cb ???
5   ???                           	0x000000012a8d5a94 ???
6   ???                           	0x000000012a8e9a7d ???
7   ???                           	0x000000012a932e07 ???
8   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 10:: ThreadPoolBackgroundWorker
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031132a mach_msg_trap + 10
2   ???                           	0x000000012a937492 ???
3   ???                           	0x000000012a8df778 ???
4   ???                           	0x000000012a8e0150 ???
5   ???                           	0x000000012a8dfc44 ???
6   ???                           	0x000000012a932e07 ???
7   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
8   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 11:: Chrome_IOThread
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031a1ea kevent64 + 10
2   ???                           	0x000000012a941cc7 ???
3   ???                           	0x000000012a8ca62b ???
4   ???                           	0x000000012a88e7cb ???
5   ???                           	0x000000012e80ef06 ???
6   ???                           	0x000000012a8e9a7d ???
7   ???                           	0x000000012a932e07 ???
8   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 12:: NetworkConfigWatcher
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031132a mach_msg_trap + 10
2   ???                           	0x000000012a937492 ???
3   ???                           	0x000000012a9372cf ???
4   ???                           	0x000000012a85f1db ???
5   ???                           	0x000000012a8ca62b ???
6   ???                           	0x000000012a88e7cb ???
7   ???                           	0x000000012a8e9a7d ???
8   ???                           	0x000000012a932e07 ???
9   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 13:: ThreadPoolForegroundWorker
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031132a mach_msg_trap + 10
2   ???                           	0x000000012a937492 ???
3   ???                           	0x000000012a8df778 ???
4   ???                           	0x000000012a8e0150 ???
5   ???                           	0x000000012a8dfcd4 ???
6   ???                           	0x000000012a932e07 ???
7   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
8   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 14:: CompositorTileWorker1
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff20313d4e __psynch_cvwait + 10
2   ???                           	0x000000012a92ee18 ???
3   ???                           	0x000000012bbe65f8 ???
4   ???                           	0x000000012a932e07 ???
5   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
6   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 15:: Chrome_InProcGpuThread
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031132a mach_msg_trap + 10
2   ???                           	0x000000012a937492 ???
3   ???                           	0x000000012a85f20f ???
4   ???                           	0x000000012a8ca62b ???
5   ???                           	0x000000012a88e7cb ???
6   ???                           	0x000000012a8e9a7d ???
7   ???                           	0x000000012a932e07 ???
8   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 16:: Chrome_ChildIOThread
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031a1ea kevent64 + 10
2   ???                           	0x000000012a941cc7 ???
3   ???                           	0x000000012a8ca62b ???
4   ???                           	0x000000012a88e7cb ???
5   ???                           	0x000000012a8e9a7d ???
6   ???                           	0x000000012a932e07 ???
7   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
8   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 17:: VizCompositorThread
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031132a mach_msg_trap + 10
2   ???                           	0x000000012a937492 ???
3   ???                           	0x000000012a9372cf ???
4   ???                           	0x000000012a85f1db ???
5   ???                           	0x000000012a8ca62b ???
6   ???                           	0x000000012a88e7cb ???
7   ???                           	0x000000012a8e9a7d ???
8   ???                           	0x000000012a932e07 ???
9   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 18:: NetworkConfigWatcher
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031132a mach_msg_trap + 10
2   ???                           	0x000000012a937492 ???
3   ???                           	0x000000012a9372cf ???
4   ???                           	0x000000012a85f1db ???
5   ???                           	0x000000012a8ca62b ???
6   ???                           	0x000000012a88e7cb ???
7   ???                           	0x000000012a8e9a7d ???
8   ???                           	0x000000012a932e07 ???
9   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 19:: NetworkConfigWatcher
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031132a mach_msg_trap + 10
2   ???                           	0x000000012a937492 ???
3   ???                           	0x000000012a9372cf ???
4   ???                           	0x000000012a85f1db ???
5   ???                           	0x000000012a8ca62b ???
6   ???                           	0x000000012a88e7cb ???
7   ???                           	0x000000012a8e9a7d ???
8   ???                           	0x000000012a932e07 ???
9   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 20:: ThreadPoolSingleThreadForegroundBlocking0
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031132a mach_msg_trap + 10
2   ???                           	0x000000012a937492 ???
3   ???                           	0x000000012a9372cf ???
4   ???                           	0x000000012a8df76a ???
5   ???                           	0x000000012a8e0150 ???
6   ???                           	0x000000012a8dfd34 ???
7   ???                           	0x000000012a932e07 ???
8   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 21:: MemoryInfra
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031132a mach_msg_trap + 10
2   ???                           	0x000000012a937492 ???
3   ???                           	0x000000012a9372cf ???
4   ???                           	0x000000012a85f1db ???
5   ???                           	0x000000012a8ca62b ???
6   ???                           	0x000000012a88e7cb ???
7   ???                           	0x000000012a8e9a7d ???
8   ???                           	0x000000012a932e07 ???
9   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 22:: NetworkConfigWatcher
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031132a mach_msg_trap + 10
2   ???                           	0x000000012a937492 ???
3   ???                           	0x000000012a9372cf ???
4   ???                           	0x000000012a85f1db ???
5   ???                           	0x000000012a8ca62b ???
6   ???                           	0x000000012a88e7cb ???
7   ???                           	0x000000012a8e9a7d ???
8   ???                           	0x000000012a932e07 ???
9   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 23:: com.apple.NSEventThread
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031132a mach_msg_trap + 10
2   com.apple.CoreFoundation      	0x00007fff2043f9c5 __CFRunLoopServiceMachPort + 316
3   com.apple.CoreFoundation      	0x00007fff2043e07b __CFRunLoopRun + 1332
4   com.apple.CoreFoundation      	0x00007fff2043d480 CFRunLoopRunSpecific + 567
5   ???                           	0x00007fff22ce9baa ???
6   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
7   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 24:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0   ???                           	0x00007ffe94562ab8 ???
1   libsystem_kernel.dylib        	0x00007fff2031132a mach_msg_trap + 10
2   ???                           	0x000000012a937492 ???
3   ???                           	0x000000012a9372cf ???
4   ???                           	0x000000012a8df76a ???
5   ???                           	0x000000012a8dfe3d ???
6   ???                           	0x000000012a8dfc74 ???
7   ???                           	0x000000012a932e07 ???
8   libsystem_pthread.dylib       	0x00007fff20346954 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff203424a7 thread_start + 15

Thread 25:
0   runtime                       	0x00007ffdffc6b99c 0x7ffdffc11000 + 371100

Thread 26:
0   runtime                       	0x00007ffdffc6b99c 0x7ffdffc11000 + 371100

Thread 27:
0   runtime                       	0x00007ffdffc6b99c 0x7ffdffc11000 + 371100

Thread 28:
0   runtime                       	0x00007ffdffc6b99c 0x7ffdffc11000 + 371100

Thread 29:
0   runtime                       	0x00007ffdffc6b99c 0x7ffdffc11000 + 371100

Thread 30:
0   runtime                       	0x00007ffdffc6b99c 0x7ffdffc11000 + 371100

Thread 31:
0   runtime                       	0x00007ffdffc6b99c 0x7ffdffc11000 + 371100

Thread 32:
0   runtime                       	0x00007ffdffc6b99c 0x7ffdffc11000 + 371100

Thread 33:
0   runtime                       	0x00007ffdffc6b99c 0x7ffdffc11000 + 371100

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x0000000200c1fe00  rcx: 0x0000000000000000  rdx: 0x0000000000000000
  rdi: 0xc1edf6d7962f542f  rsi: 0x000000014c4bc088  rbp: 0xc1edf6d7962f542f  rsp: 0x000000014c4bc088
   r8: 0x000000000000000a   r9: 0xc1edf6d7962f542f  r10: 0x0000000200c1fe00  r11: 0x00007fff2022abcb
  r12: 0x0000000000000103  r13: 0x0000000000000003  r14: 0x000000000000000a  r15: 0x0000000000000016
  rip:   rfl: 0x0000000000000283


Binary Images:
                 0 - 0xffffffffffffffff +select.cpython-38-darwin.so (???) /private/var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so
       0x200b48000 -        0x200be3fff  dyld (851.27)  /usr/lib/dyld
    0x7ffdffc11000 -     0x7ffdffc84fff +runtime (203.42)  /Library/Apple/*/runtime
    0x7fff2007e000 -     0x7fff2007ffff  libsystem_blocks.dylib (79)  /usr/lib/system/libsystem_blocks.dylib
    0x7fff20080000 -     0x7fff200b5fff  libxpc.dylib (2038.100.48)  /usr/lib/system/libxpc.dylib
    0x7fff200b6000 -     0x7fff200cdfff  libsystem_trace.dylib (1277.100.21)  /usr/lib/system/libsystem_trace.dylib
    0x7fff200ce000 -     0x7fff2016bfff  libcorecrypto.dylib (1000.100.38)  /usr/lib/system/libcorecrypto.dylib
    0x7fff2016c000 -     0x7fff20198fff  libsystem_malloc.dylib (317.100.9)  /usr/lib/system/libsystem_malloc.dylib
    0x7fff20199000 -     0x7fff201ddfff  libdispatch.dylib (1271.100.5)  /usr/lib/system/libdispatch.dylib
    0x7fff201de000 -     0x7fff20217fff  libobjc.A.dylib (824)  /usr/lib/libobjc.A.dylib
    0x7fff20218000 -     0x7fff2021afff  libsystem_featureflags.dylib (28.60.1)  /usr/lib/system/libsystem_featureflags.dylib
    0x7fff2021b000 -     0x7fff202a3fff  libsystem_c.dylib (1439.100.3)  /usr/lib/system/libsystem_c.dylib
    0x7fff202a4000 -     0x7fff202f9fff  libc++.1.dylib (905.6)  /usr/lib/libc++.1.dylib
    0x7fff202fa000 -     0x7fff2030ffff  libc++abi.dylib (905.6)  /usr/lib/libc++abi.dylib
    0x7fff20310000 -     0x7fff2033ffff  libsystem_kernel.dylib (7195.101.2)  /usr/lib/system/libsystem_kernel.dylib
    0x7fff20340000 -     0x7fff2034bfff  libsystem_pthread.dylib (454.100.8)  /usr/lib/system/libsystem_pthread.dylib
    0x7fff2034c000 -     0x7fff20387fff  libdyld.dylib (851.27)  /usr/lib/system/libdyld.dylib
    0x7fff20388000 -     0x7fff20391fff  libsystem_platform.dylib (254.80.2)  /usr/lib/system/libsystem_platform.dylib
    0x7fff20392000 -     0x7fff203bdfff  libsystem_info.dylib (542.40.3)  /usr/lib/system/libsystem_info.dylib
    0x7fff203be000 -     0x7fff2085bfff  com.apple.CoreFoundation (6.9 - 1775.118.101)  /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
    0x7fff2244c000 -     0x7fff226abfff  libicucore.A.dylib (66112)  /usr/lib/libicucore.A.dylib
    0x7fff226ac000 -     0x7fff226b5fff  libsystem_darwin.dylib (1439.100.3)  /usr/lib/system/libsystem_darwin.dylib
    0x7fff22acb000 -     0x7fff22ad6fff  libsystem_notify.dylib (279.40.4)  /usr/lib/system/libsystem_notify.dylib
    0x7fff24a58000 -     0x7fff24a66fff  libsystem_networkextension.dylib (1295.101.1)  /usr/lib/system/libsystem_networkextension.dylib
    0x7fff24ac5000 -     0x7fff24adbfff  libsystem_asl.dylib (385)  /usr/lib/system/libsystem_asl.dylib
    0x7fff261d3000 -     0x7fff261dafff  libsystem_symptoms.dylib (1431.100.22)  /usr/lib/system/libsystem_symptoms.dylib
    0x7fff284da000 -     0x7fff284eafff  libsystem_containermanager.dylib (318.100.4)  /usr/lib/system/libsystem_containermanager.dylib
    0x7fff291f1000 -     0x7fff291f4fff  libsystem_configuration.dylib (1109.101.1)  /usr/lib/system/libsystem_configuration.dylib
    0x7fff291f5000 -     0x7fff291f9fff  libsystem_sandbox.dylib (1441.101.1)  /usr/lib/system/libsystem_sandbox.dylib
    0x7fff29df9000 -     0x7fff29dfbfff  libquarantine.dylib (119.40.2)  /usr/lib/system/libquarantine.dylib
    0x7fff2a397000 -     0x7fff2a3a3fff  libbz2.1.0.dylib (44)  /usr/lib/libbz2.1.0.dylib
    0x7fff2a3a4000 -     0x7fff2a3a8fff  libsystem_coreservices.dylib (127)  /usr/lib/system/libsystem_coreservices.dylib
    0x7fff2a5a5000 -     0x7fff2a5b7fff  libz.1.dylib (76)  /usr/lib/libz.1.dylib
    0x7fff2a5b8000 -     0x7fff2a603fff  libsystem_m.dylib (3186.100.3)  /usr/lib/system/libsystem_m.dylib
    0x7fff2a605000 -     0x7fff2a60afff  libmacho.dylib (980)  /usr/lib/system/libmacho.dylib
    0x7fff2a627000 -     0x7fff2a632fff  libcommonCrypto.dylib (60178.100.1)  /usr/lib/system/libcommonCrypto.dylib
    0x7fff2a633000 -     0x7fff2a63dfff  libunwind.dylib (201)  /usr/lib/system/libunwind.dylib
    0x7fff2a63e000 -     0x7fff2a645fff  liboah.dylib (203.42)  /usr/lib/liboah.dylib
    0x7fff2a646000 -     0x7fff2a650fff  libcopyfile.dylib (173.40.2)  /usr/lib/system/libcopyfile.dylib
    0x7fff2a651000 -     0x7fff2a658fff  libcompiler_rt.dylib (102.2)  /usr/lib/system/libcompiler_rt.dylib
    0x7fff2a659000 -     0x7fff2a65bfff  libsystem_collections.dylib (1439.100.3)  /usr/lib/system/libsystem_collections.dylib
    0x7fff2a65c000 -     0x7fff2a65efff  libsystem_secinit.dylib (87.60.1)  /usr/lib/system/libsystem_secinit.dylib
    0x7fff2a65f000 -     0x7fff2a661fff  libremovefile.dylib (49.101.1)  /usr/lib/system/libremovefile.dylib
    0x7fff2a662000 -     0x7fff2a662fff  libkeymgr.dylib (31)  /usr/lib/system/libkeymgr.dylib
    0x7fff2a663000 -     0x7fff2a66afff  libsystem_dnssd.dylib (1310.100.10)  /usr/lib/system/libsystem_dnssd.dylib
    0x7fff2a66b000 -     0x7fff2a670fff  libcache.dylib (83)  /usr/lib/system/libcache.dylib
    0x7fff2a671000 -     0x7fff2a672fff  libSystem.B.dylib (1292.100.5)  /usr/lib/libSystem.B.dylib
    0x7fff2a673000 -     0x7fff2a676fff  libfakelink.dylib (3)  /usr/lib/libfakelink.dylib
    0x7fff2a677000 -     0x7fff2a677fff  com.apple.SoftLinking (1.0 - 1)  /System/Library/PrivateFrameworks/SoftLinking.framework/Versions/A/SoftLinking
    0x7fff2dbbb000 -     0x7fff2dbbbfff  liblaunch.dylib (2038.100.48)  /usr/lib/system/liblaunch.dylib
    0x7fff3003f000 -     0x7fff3003ffff  libsystem_product_info_filter.dylib (8.40.1)  /usr/lib/system/libsystem_product_info_filter.dylib

Translated Code Information:
  tmp0: 0xffffffffffffffff tmp1: 0x00007ffe94562a8c tmp2: 0x00007fff2031793c


External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=518.7M resident=0K(0%) swapped_out_or_unallocated=518.7M(100%)
Writable regions: Total=2.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.0G(100%)
 
                                VIRTUAL   REGION 
REGION TYPE                        SIZE    COUNT (non-coalesced) 
===========                     =======  ======= 
Accelerate framework               256K        2 
Activity Tracing                   256K        1 
CG backing stores                 3264K        6 
CG image                           164K       15 
CoreAnimation                       72K       10 
CoreGraphics                        12K        2 
CoreUI image data                 2440K       19 
Foundation                          16K        1 
Kernel Alloc Once                    8K        1 
MALLOC                           354.2M       70 
MALLOC guard page                  192K        8 
MALLOC_MEDIUM (reserved)         776.0M        7         reserved VM address space (unallocated)
MALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)
Mach message                        24K        6 
OpenGL GLSL                        384K        5 
Rosetta Arena                     2048K        1 
Rosetta Generic                   1508K      374 
Rosetta IndirectBranch            1024K        1 
Rosetta JIT                      128.0M        1 
Rosetta Return Stack               640K       64 
Rosetta Thread Context             640K       64 
STACK GUARD                         36K        9 
Stack                            136.6M       33 
Stack Guard                       56.1M       24 
VM_ALLOCATE                       97.8M      156 
VM_ALLOCATE (reserved)           160.1M        9         reserved VM address space (unallocated)
__DATA                             500K       50 
__DATA_CONST                      2983K       40 
__DATA_DIRTY                        95K       24 
__LINKEDIT                       506.3M        5 
__OBJC_RO                         70.1M        1 
__OBJC_RW                         2480K        2 
__TEXT                            12.5M       50 
__UNICODE                          588K        1 
dylib                             2088K       23 
dylib (reserved)                    88K        6         reserved VM address space (unallocated)
mapped file                        5.3G      842 
shared memory                     7424K       37 
unshared pmap                     10.5M        6 
===========                     =======  ======= 
TOTAL                              7.9G     1977 
TOTAL, minus reserved VM space     6.6G     1977 


System Profile:
Network Service: Wi-Fi, AirPort, en0
Boot Volume File System Type: apfs
Memory Module: LPDDR4
USB Device: USB 3.1 Bus
USB Device: USB 3.1 Bus
Thunderbolt Bus: MacBook Pro, Apple Inc.
Thunderbolt Bus: MacBook Pro, Apple Inc.
Model: MacBookPro17,1, BootROM 6723.101.4, proc 8:4:4 processors, 16 GB, SMC 
Graphics: kHW_AppleM1Item, Apple M1, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme, wl0: Apr  2 2021 00:48:12 version 18.52.1.2.7.8.116 FWID 01-9f7b4413
Bluetooth: Version 8.0.4d18, 3 services, 27 devices, 1 incoming serial ports


Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 71.5.9
OpenGL renderer: Apple M1
OpenGL vendor: AppleHardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro17,1
      Processor Name: Unknown
      Processor Speed: 2,4 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache (per Core): 4 MB
      Memory: 16 GB

Software:

    System Software Overview:

      System Version: macOS 11.3.1 (20E241)
      Kernel Version: Darwin 20.4.0
      Time since boot: 63 days 9:22

Graphics/Displays:

    Apple M1:

      Chipset Model: Apple M1
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        Color LCD:
          Resolution: 2880 x 1800
          UI Looks like: 1440 x 900 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal

Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.2
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.5.0
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0.1
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.2
    ChimeraX-AtomicLibrary: 3.1.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.5
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.3
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.6
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.9
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 2.0.1
    matplotlib: 3.3.2
    matplotlib-inline: 0.1.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.3.0

Change History (3)

comment:1 by pett, 4 years ago

Cc: Tom Goddard added
Component: UnassignedCore
Owner: set to pett
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionUnknown crash

comment:2 by pett, 4 years ago

Resolution: can't reproduce
Status: acceptedclosed

Was using about 8GB

comment:3 by Tom Goddard, 4 years ago

Apple M1 CPU. Maybe that and the Rosetta2 emulation done for our Intel ChimeraX app is why the stack is trashed.

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