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Timeline
Aug 25, 2017:
- 3:42 PM Ticket #811 (Optimize cmap hdf5 format read speed for light microscopy data) created by
- The Chimera map format (*.cmap) HDF5 seems to be slow reading …
Aug 24, 2017:
- 3:04 PM 2017-08-24 edited by
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- 3:00 PM 2017-08-24 edited by
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- 2:51 PM 2017-08-24 created by
- 2:06 PM DeveloperMeetings edited by
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- 2:05 PM Ticket #809 (mmCIF CA trace not quite correct) closed by
- fixed: Changed missing structure test for adjacent residues from gap or (not …
- 1:55 PM Ticket #810 (labels == slow) created by
- In the attached session I have roughly 10 labels shown, but the …
- 1:44 PM Ticket #809 (mmCIF CA trace not quite correct) created by
- For structures that change from full-atomic to chain-trace at some …
- 12:59 PM Ticket #808 (attempt to cartoon P-only nucleic in 1gsg gives indexError traceback) created by
- open 1gsg cartoon ...gives the following traceback (can be blamed on …
- 12:05 PM Ticket #807 (Atoms are wrong color after some are deleted) closed by
- fixed: Fixed. Recent graphics update code changes were not updating colors …
- 11:46 AM Ticket #807 (Atoms are wrong color after some are deleted) created by
- open 3fx2 hide ribbon ; show atoms delete solvent Atoms end up all …
Aug 22, 2017:
- 6:07 PM ChangeLog edited by
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- 2:51 PM ChangeLog edited by
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- 2:17 PM Ticket #806 (Chimera X QT bug?) created by
- […] [[Image(...)]]
Aug 21, 2017:
- 10:49 AM Ticket #805 (Help viewer no horizontal scroll if window made narrower than image) created by
- For example, start ChimeraX, menu: Help... User Guide, choose (under …
Aug 17, 2017:
- 6:39 PM Ticket #804 (Show residues fit error) closed by
- fixed: Fixed in tonight's ChimeraX builds. Thanks for reporting this problem …
- 5:15 PM ChangeLog edited by
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- 3:28 PM ChangeLog edited by
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- 3:15 PM 2017-08-17 edited by
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- 2:51 PM 2017-08-17 edited by
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- 2:49 PM 2017-08-17 edited by
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- 2:48 PM 2017-08-17 edited by
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- 2:48 PM 2017-08-17 edited by
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- 2:34 PM 2017-08-17 edited by
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- 2:29 PM 2017-08-17 edited by
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- 2:14 PM 2017-08-17 created by
- 2:11 PM DeveloperMeetings edited by
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- 1:34 PM Ticket #804 (Show residues fit error) created by
- […] Chimerax_error.png
Aug 16, 2017:
- 10:55 AM Ticket #803 (Multiprocessing "spawn" method does not work) created by
- (No idea who best to assign this to, so giving it to Tom for now). …
Aug 15, 2017:
- 12:12 PM ChangeLog edited by
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- 12:11 PM ChangeLog edited by
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- 10:28 AM Ticket #802 (changing font of residue labels gives traceback) closed by
- fixed: Fixed. Sorry for so many label bugs.
- 9:53 AM Ticket #802 (changing font of residue labels gives traceback) created by
- If I specify the font in the same command as creating the residue …
- 12:00 AM Milestone Alpha2 completed
Aug 14, 2017:
- 5:07 PM Ticket #801 (Unpredictable keyword completion) created by
- Currently, if a user doesn't type enough characters to uniquely …
- 3:27 PM ChangeLog edited by
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- 1:32 PM ChangeLog edited by
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- 10:52 AM Ticket #800 (Need undo manager) created by
- Instead of global undo for all actions, implement an undo manager that …
- 10:50 AM Ticket #799 (Core preferences GUI) created by
- Also, at least one example for a bundle preferences GUI
- 10:47 AM ChangeLog edited by
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- 10:46 AM Ticket #798 (Switch default session format (v3) to msgpack) created by
- Support additional types (e.g., DateTime, list) using msgpack …
- 10:11 AM Ticket #797 ("label del" causes traceback) closed by
- fixed: Fixed. Not sure how I missed this in testing. I guess because I …
- 9:45 AM ChangeLog edited by
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- 9:45 AM ChangeLog edited by
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- 9:44 AM ChangeLog edited by
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- 9:38 AM Ticket #797 ("label del" causes traceback) created by
- It doesn't seem to matter which kind of 3D labels (atom, residue, …
Aug 13, 2017:
- 7:58 PM ChangeLog edited by
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- 7:57 PM ChangeLog edited by
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- 7:56 PM ChangeLog edited by
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Aug 11, 2017:
- 6:55 PM Ticket #796 (deleting residues with labels leaves labels shown and after that, no ...) closed by
- fixed: Fixed. Was missing code to check of labeled atom, residue or …
- 6:21 PM Ticket #795 (matched model's labels scaling up and down as I rotate the view) closed by
- fixed: Ha, ha, ha. Fixed.
- 6:13 PM Ticket #796 (deleting residues with labels leaves labels shown and after that, no ...) created by
- open 2gbp label ligand | solvent res (labels reorient if I rotate) del …
- 5:59 PM Ticket #795 (matched model's labels scaling up and down as I rotate the view) created by
- When I superimpose one model on the other, the matched model's labels …
- 1:45 PM ChangeLog edited by
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- 12:02 PM ChangeLog edited by
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- 11:08 AM ChangeLog created by
- 10:43 AM WikiStart edited by
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Aug 10, 2017:
- 5:34 PM 2017-08-10 edited by
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- 5:15 PM Ticket #794 (wrong pseudobonds labeled, and "close" causes seg fault) closed by
- fixed: To correctly copy coordinate sets, I needed to override the assignment …
- 3:35 PM 2017-08-10 edited by
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- 3:17 PM 2017-08-10 created by
- 2:44 PM BundleSessionSupport edited by
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- 2:09 PM DeveloperMeetings edited by
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- 11:12 AM Ticket #794 (wrong pseudobonds labeled, and "close" causes seg fault) created by
- If I run the following setup (also attached as cxc) open 4gbc sym #1 …
- 10:54 AM Ticket #793 (traceback due to typo in hbonds code) closed by
- fixed: My old ass eyes can't distinguish 'n' from 'm' anymore!
- 10:36 AM Ticket #793 (traceback due to typo in hbonds code) created by
- open 2ptt hbonds /a restrict /b Traceback (most recent call last): …
Aug 9, 2017:
- 1:15 PM Ticket #791 (Cannot change b-factors or occupancies) closed by
- fixed: Okay, after a code review finding no other instances of this usage …
- 9:57 AM Ticket #792 (RFE: add labels (3D) to color/transparency command targets) created by
- Consider adding a (3D) labels target to the color and transparency …
- 2:42 AM Ticket #791 (Cannot change b-factors or occupancies) created by
- […] I believe the culprit here is in CoordSet.cpp, in …
Aug 8, 2017:
- 6:06 PM Ticket #787 (label pseudobonds doesn't work if given pbond model number) closed by
- fixed: Fixed.
- 5:37 PM Ticket #774 (sym assembly model lacks metal coordination pbonds) closed by
- fixed
- 3:55 PM Ticket #790 (error saving session with crosslinks histogram) created by
- If I open the attached cxc file and then try to save session, I get …
- 3:30 PM Ticket #789 (Optimize atom radius lookup) created by
- Looking up atom radii values during graphics updates and when …
- 1:59 PM Ticket #788 (hbonds "selrestrict both" causes error) closed by
- fixed: Fixed as a side effect of findclash-like command syntax changes
- 12:20 PM Ticket #788 (hbonds "selrestrict both" causes error) created by
- This may be moot since you're getting rid of the selrestrict option, …
- 12:06 PM Ticket #787 (label pseudobonds doesn't work if given pbond model number) created by
- I'm pretty sure this used to work, but now the following doesn't show …
- 11:55 AM Ticket #786 (need method to reset view to default state) created by
- When closing a session, all of the tools are reset to the default …
Aug 7, 2017:
- 5:38 PM Ticket #785 (opening session w/ sequence after closing a sequence gives traceback) closed by
- fixed: The tools manager wasn't handling the change of tool ID during session …
- 4:37 PM Ticket #781 (hbonds error on 1bzm) closed by
- fixed
- 1:49 PM Ticket #785 (opening session w/ sequence after closing a sequence gives traceback) created by
- Restoring the attached session in a fresh ChimeraX seems to work fine, …
- 11:37 AM Ticket #784 (Revise BundleAPI for registering commands) created by
- Instead of passing in the command name, pass in the bundle's …
- 11:35 AM Ticket #783 (Integrate bundle help files with core help) created by
- Start by modifying help URLs to work with help in bundles: …
- 11:27 AM Ticket #782 (Need to be able to generate documention for bundles) created by
- Bundles are built using the ChimeraX application. Thus sphinx et. al. …
- 10:49 AM Ticket #781 (hbonds error on 1bzm) created by
- open1 bzm hb Traceback (most recent call last): File …
- 10:06 AM BundleSessionSupport created by
Aug 5, 2017:
- 1:40 PM Ticket #700 (Toolshed dependency issue) closed by
- fixed: Fixed in 79500db. The toolshed code was expecting an …
Aug 4, 2017:
- 10:54 AM Ticket #777 (3D labels sideways on matched model) closed by
- fixed: Humorous slanted labels. Fixed.
- 10:49 AM Ticket #780 (Prerequisite dependency versions listed in two places) created by
- Some of the prerequisite dependency versions are listed in two or …
- 8:05 AM Ticket #779 (Fresh build breaks on appdirs requirement) closed by
- not a bug: Never mind. Seems I had some old partial build after all. After I …
- 7:18 AM Ticket #779 (Fresh build breaks on appdirs requirement) created by
- Traceback: […] There's quite a bit of chatter about this online …
- 3:58 AM Ticket #778 (changing coordinates very slow for large structures) created by
- It would seem that in large structures (i.e. over 100k atoms), moving …
Aug 3, 2017:
- 3:02 PM 2017-08-03 created by
- 2:39 PM DeveloperMeetings edited by
- (diff)
- 12:49 PM Ticket #777 (3D labels sideways on matched model) created by
- If I've moved a model separately from the scene, its labels are not …
Aug 2, 2017:
- 11:29 AM Ticket #772 (4gbc "sym #1 assembly 1 copies t" gives traceback) closed by
- fixed: Fixed.
- 10:56 AM Ticket #770 (Memory leak on windows with any model open, 40 Mb / minute) closed by
- fixed: "Fixed" by 1b849bdc2. The ChangeTracker.changed method …
Aug 1, 2017:
- 5:49 PM Ticket #773 (sideways labels on graphical copies) closed by
- wontfix: I think this probably won't be fixed. A "graphical copy" is very …
- 12:59 PM Ticket #776 (Right-click on Side View produces traceback) created by
- Traceback (most recent call last): File …
Jul 31, 2017:
- 7:25 PM Ticket #775 (add matrix/place attr to C++ Structure) created by
- ...to make it easy to get the transformed coordinates, and to get a …
- 4:41 PM Ticket #774 (sym assembly model lacks metal coordination pbonds) created by
- open 4gbc ... see two metal-coordination pbonds sym #1 assem 1 ... …
- 3:57 PM Ticket #773 (sideways labels on graphical copies) created by
- example (image attached): open 4gbc sym #1 assem 1 view la :gly res
- 2:32 PM Ticket #771 ("hb salt true" causes traceback on 5o3o) closed by
- fixed: Fixed now.
- 2:17 PM Ticket #730 (unhelpful links in Log from "open formats" command) closed by
- fixed: Used help:user/commands/... links to link to internal documentation.
- 12:47 PM Ticket #772 (4gbc "sym #1 assembly 1 copies t" gives traceback) created by
- From the Log: open 4gbc Summary of feedback from opening 4gbc fetched …
- 12:41 PM Ticket #719 (SSL error fetching from PDB on Windows) closed by
- worksforme: No longer able to reproduce bug. -- Greg
- 12:14 PM Ticket #615 (Add support for 3d labels) closed by
- fixed: Added session support for 3d labels. I think the current capabilities …
- 11:48 AM Ticket #771 ("hb salt true" causes traceback on 5o3o) created by
- open 5o3o format mmcif fromDatabase pdb Summary of feedback from …
Jul 28, 2017:
- 9:04 AM Ticket #770 (Memory leak on windows with any model open, 40 Mb / minute) created by
- On WIndows with any model (tested PDB, mol2, density map) open …
Jul 27, 2017:
- 3:34 PM 2017-07-27 created by
- 3:29 PM Ticket #769 (Implement findclash) created by
- findclash is needed by RINalyzer. Now that hbond is available, …
- 2:07 PM DeveloperMeetings edited by
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- 1:35 PM 2017-07-06 edited by
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- 1:27 PM 2017-07-06 edited by
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- 1:23 PM Ticket #768 (depth-cueing off not remembered in session) closed by
- fixed: Fixed. Depth cue was not being saved in sessions.
- 11:26 AM Ticket #768 (depth-cueing off not remembered in session) created by
- If I set "light depth f" and then use "light" w/o arguments it shows …
Jul 26, 2017:
- 5:43 PM Ticket #767 (image save from this session gives quadrant missing silhouette edges) created by
- On my Mac laptop with Intel graphics, OpenGL version: 4.1 …
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