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Timeline
May 11, 2017:
- 5:52 PM Ticket #667 (Automatically scale maps in volume morph) created by
- Might add a "minRMS true/false" option to the volume morph command to …
- 5:47 PM Ticket #661 (traceback changing surf probe radius after hiding a patch) closed by
- fixed: Fixed. When surface was recalculated it didn't update which triangles …
- 5:20 PM Ticket #666 (Allow user customizable toolbars) created by
- Let the user add toolbar buttons using a command that specifies an …
- 5:10 PM Ticket #665 (Rapid Access improvements) created by
- 1) Tool tips for file names 2) Better icons for non-structures #705 …
- 4:56 PM Ticket #664 (Graphics not redrawn when rapid access hidden) closed by
- fixed: Fixed. Code was not handling expose events. Tested on Linux but not …
- 4:55 PM Ticket #664 (Graphics not redrawn when rapid access hidden) created by
- On Linux and Windows the graphics is not redrawn if the rapid access …
- 4:05 PM Ticket #663 (Tab completion in shell causes crash) closed by
- fixed: Fixed. If there is no active coordinate set because structure has no …
- 4:05 PM Ticket #663 (Tab completion in shell causes crash) created by
- a = AtomicStructure(session) a.<tab> causes crash in shell. Problem …
- 3:12 PM DeveloperMeetings edited by
- (diff)
- 3:12 PM 2017-05-11 created by
- 2:25 PM Ticket #662 (ribbon "normalization error") created by
- When ribbons are computes for 2a06, "normalization error" appears in …
- 10:51 AM Ticket #661 (traceback changing surf probe radius after hiding a patch) created by
- open 2gbp sel zone ligand 6 protein surf sel vis 1 [... ctrl-click to …
May 10, 2017:
- 6:20 PM Ticket #644 (mouse over crosslink ensemble histogram gives IndexError) closed by
- fixed: Fixed.
- 4:28 PM Ticket #645 (mouse over crosslinks histogram of closed structure causes traceback) closed by
- fixed: Fixed.
- 3:43 PM Ticket #652 (infinite loop in PDB reader) closed by
- fixed: Translation of SEQRES records wasn't stripping spaces from residue names.
- 1:55 PM Ticket #660 (Add mouse mode to adjust depth cueing) created by
- Adjust depth cue start/end fractions with mouse mode. Begin forwarded …
- 1:52 PM Ticket #659 (Clip mode shift modifier doesn't work) created by
- The clip mode shift modifier doesn't work because right shift is bound …
- 12:20 PM Ticket #658 (Improve keyboard shortcuts) created by
- Several improvements to keyboard shortcuts would make them more …
- 12:08 PM Ticket #657 (Add RNA feature identification using DSSR) created by
- The DSSR software identifies many basic features of RNA structures. …
May 9, 2017:
- 3:19 PM Ticket #647 (save-restore session compressed two models into one) closed by
- fixed: Fixed -- pseudobond groups weren't saving/restoring their model state. …
- 3:16 PM Ticket #656 (Crop two or more maps to same region) created by
- Begin forwarded message: From: Soumya Govinda Remesh Subject: …
May 8, 2017:
- 3:27 PM Ticket #655 (file history format is sticky) created by
- After opening up a PDB file with format pdb, it stays pdb format …
- 12:23 PM Ticket #654 (Rename crosslinks to "measure lengths") created by
- Might rename crosslinks command to "measure lengths". Begin forwarded …
May 5, 2017:
- 7:45 AM Ticket #653 (Odd library problem installing OpenMM 7.1.0) created by
- As per Tom's suggestion a while back, I've installed OpenMM 7.1.0 into …
May 4, 2017:
- 1:00 PM Ticket #652 (infinite loop in PDB reader) created by
- The PDB reader goes into an infinite loop when trying to open 5a8l. …
May 3, 2017:
- 9:18 AM Ticket #651 (Toolshed failing) created by
- I received errors on submitting a new bundle release (although it does …
May 2, 2017:
- 4:12 AM Ticket #650 (Add shutdown to session.triggers) created by
- At the moment I can't find any way for a Python process to know when …
May 1, 2017:
- 5:15 PM Ticket #649 (bundle specification of open/save arg UI) created by
- Our current scheme of registering keywords needs to be expanded …
- 4:40 PM Ticket #648 (consider pop-up text explaining Log click-to-execute links) closed by
- fixed: I implemented the request, though I capitalized the first letter of …
- 3:11 PM Ticket #648 (consider pop-up text explaining Log click-to-execute links) created by
- This is an idea rather than a demand.... maybe the click-to-execute …
- 2:23 PM Ticket #647 (save-restore session compressed two models into one) created by
- open 1zik open 1zik.pb open 1zik move y 10 mod #3 open 1zik2.pb ... …
- 1:52 PM Ticket #646 (consider whether file-history should remember coordset status) created by
- If I open something as a trajectory, this status is not retained in …
- 1:44 PM Ticket #645 (mouse over crosslinks histogram of closed structure causes traceback) created by
- More along the lines of idiot-proofing. Need to close histogram when …
- 1:33 PM Ticket #644 (mouse over crosslink ensemble histogram gives IndexError) created by
- Example: open 5ml1 format pdb coord t (select one pseudobond) crossl …
Apr 27, 2017:
Apr 24, 2017:
- 2:37 PM Ticket #623 (Move selected core bundles to toolshed) closed by
- duplicate: Duplicate of #621
- 2:35 PM Ticket #624 (Session format: test msgpack as an alternative to pickle) closed by
- duplicate: Duplicate of #611
Apr 21, 2017:
- 3:27 PM Ticket #643 (chimerax not starting) created by
- […]
- 3:13 PM Ticket #642 (OpenMM bug) created by
- […]
- 2:00 PM Ticket #641 (Restoring session with atomic model fails) closed by
- fixed
Apr 20, 2017:
- 7:36 PM Ticket #640 (Rapid access file history can slow startup checking if files exist) closed by
- fixed: I made file history not check for deleted files at start-up. …
- 7:05 PM Ticket #641 (Restoring session with atomic model fails) created by
- open 1a0m save test.cxs close open test.cxs Unable to restore …
- 6:00 PM Ticket #640 (Rapid access file history can slow startup checking if files exist) created by
- The current file history code checks all the files in the history to …
- 1:30 PM Ticket #639 (atomspec model ordering not used in matrixcopy between multiple models) closed by
- fixed: Fixed. Model argument parsing was not preserving order with TopModelsArg.
- 10:57 AM Ticket #637 (Toolshed: missing 'logger' arg) closed by
- fixed: Fixed in 89f6694. Pass in logger to …
- 9:20 AM Ticket #639 (atomspec model ordering not used in matrixcopy between multiple models) created by
- This may be the same problem as an atomspec ordering ticket, but I was …
- 4:26 AM Ticket #638 (Linux OpenBLAS library threading problems) created by
- This came up a while back, and I have the below workaround defined in …
Apr 19, 2017:
- 3:39 PM Ticket #637 (Toolshed: missing 'logger' arg) created by
- In toolshed/info.py on line 653, the call to _get_api() is missing the …
Apr 18, 2017:
- 12:22 PM Ticket #635 (silhouettes don't work right in orthographic) closed by
- fixed: Fixed. The silhouette edge depth jump test was assuming perspective …
- 11:25 AM Ticket #636 (Side View does not renormalize) created by
- Maybe "renormalize" is not the right word, but what I mean is that it …
- 10:30 AM Ticket #635 (silhouettes don't work right in orthographic) created by
- With silhouettes + camera ortho, the outlines for depth jumps …
Apr 17, 2017:
- 2:15 PM Ticket #384 (problem dealing with microheterogeneity) closed by
- fixed: Changed code to delete the "microheterogeneity" residues instead of …
- 11:28 AM Ticket #634 ("windowsize" as first command after starting ChimeraX does not work) created by
- Apparently resizes the whole window to that size, instead of the …
Apr 14, 2017:
- 1:07 PM Ticket #631 (Crossfade wrong on retina MacBook Pro 2012, 2x scaling problem) closed by
- fixed: Fixed.
Apr 13, 2017:
- 5:37 PM Ticket #619 (Bug reporting lite) closed by
- fixed
- 5:14 PM Ticket #633 (Status messages cause havoc by running event loop) created by
- To get status messages to appear we run the Qt event loop when the …
- 12:50 PM Ticket #632 (2d label improvements) created by
- 1) Most important feature to make 2d labels more usable is a mouse …
- 9:22 AM Ticket #631 (Crossfade wrong on retina MacBook Pro 2012, 2x scaling problem) created by
- When crossfading to hide one of two superposed models crossfade 100 …
Apr 11, 2017:
- 2:52 PM Ticket #627 (Atom deleted during atoms.radii lookup) closed by
- fixed: Fixed. Needed to clear destruction-batcher variables earlier to clear …
- 12:04 PM Ticket #629 (Drawing.display not saved/restored in session) closed by
- fixed: Fixed. Whether models are displayed was not being saved in sessions.
- 11:48 AM Ticket #630 (Add "position" command) created by
- The "view initial", "view matrix" and "view position" subcommands are …
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