Timeline



Jun 23, 2016:

4:08 PM Ticket #355 ("usage volume" broken) closed by Tom Goddard
fixed: Fixed. The fact that the volume command allows repeating level and …
4:01 PM Ticket #355 ("usage volume" broken) created by Elaine Meng
It may be specific to volume since I didn't have this problem with …
3:46 PM Ticket #354 (fitmap search error) closed by Tom Goddard
fixed: Fixed. I had not tested fit search using a map with symmetry …
3:39 PM Ticket #353 (fitmap symmetric error) closed by Tom Goddard
fixed: Fixed. Problem was Chimera map file reader did not read symmetries …
1:08 PM Ticket #354 (fitmap search error) created by Elaine Meng
Maybe this map file is bad somehow. I assigned symmetry and wrote it …
12:57 PM Ticket #353 (fitmap symmetric error) created by Elaine Meng
If I open the attached map (D2 symmetry) and then use commands vol #1 …

Jun 22, 2016:

2:39 PM Ticket #352 (can't use "sel" surface in symmetry center spec) closed by Tom Goddard
fixed: Fixed.
2:28 PM Ticket #108 (develop submittable patch for floating pane behavior) closed by Eric Pettersen
wontfix: Moot since we're moving to Qt
2:28 PM Ticket #138 (Command-line does not receive ctrl-A, ctrl-E ... when graphics pane ...) closed by Eric Pettersen
wontfix: Moving to Qt, and this works in Qt.
2:05 PM Ticket #352 (can't use "sel" surface in symmetry center spec) created by Elaine Meng
This is an obscure situation, so low priority. If I select a surface …
12:39 PM Ticket #350 (command save-session traceback (but menu works)) closed by Tom Goddard
fixed: Fixed. The code that makes the session file Mac icon show a thumbnail …
11:37 AM Ticket #351 (Turning on soft/full lighting hides a surface within a transparent surface) created by Elaine Meng
Tested in three situations: with an isosurface inside of transparent …
10:40 AM Ticket #350 (command save-session traceback (but menu works)) created by Elaine Meng
I could save the attached session with the menu, but trying to save it …

Jun 21, 2016:

7:47 PM Ticket #349 (Specify spacegroup symmetry in vop cover command) created by Tom Goddard
Currently the vop cover command can only get symmetries from the map. …

Jun 20, 2016:

12:28 PM Ticket #348 (opening 1a0s gives traceback and no cartoons shown) created by Elaine Meng
The problem appears to be in generating cartoons (ribbons). open 1a0s …

Jun 16, 2016:

5:31 PM Ticket #345 (molmap "balls" option error) closed by Tom Goddard
fixed: Fixed. The "balls" option means each atom adds a function that is not …
4:22 PM Ticket #347 (Command to search documentation) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: Re: clipping? …
4:19 PM Ticket #346 (Tab completion of command syntax) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: Re: clipping? …
3:16 PM FAI edited by Conrad Huang
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3:10 PM FAI edited by Conrad Huang
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3:09 PM DeveloperMeetings edited by Conrad Huang
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3:04 PM 2016-06-16 edited by Conrad Huang
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3:03 PM 2016-06-16 created by Conrad Huang
2:01 PM DeveloperMeetings edited by Conrad Huang
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11:34 AM Ticket #345 (molmap "balls" option error) created by Elaine Meng
(using structure 2gbp but I don't think it matters) molmap strand 4 …
10:52 AM Ticket #344 (Rework clip command options) created by Tom Goddard
It is impossible to remember which option, near/far or front/back, …

Jun 15, 2016:

11:19 AM Ticket #343 (MIDI for interfacing to input devices) created by matthewd@…
Begin forwarded message: From: "Dougherty, Matthew T" Subject: …

Jun 13, 2016:

10:53 AM FAI edited by Eric Pettersen
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10:53 AM FAI edited by Eric Pettersen
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Jun 9, 2016:

4:15 PM Ticket #342 (Convert from cxhelp/cxcmd schemes to http scheme) created by Eric Pettersen
In order for ChimeraX web pages to have better functionality outside …
3:33 PM DeveloperMeetings edited by Conrad Huang
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3:33 PM 2016-06-09 created by Conrad Huang
3:33 PM FAI edited by Conrad Huang
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1:50 PM Ticket #328 (Command-C does not copy selected text in log in Qt GUI) closed by Eric Pettersen
fixed: Inserted workaround to explicitly assign the copy-text shortcut on Mac

Jun 8, 2016:

3:38 PM Ticket #323 (Up/down arrow does not promote selection, Qt.) closed by Eric Pettersen
fixed: Fixed

Jun 7, 2016:

5:00 PM Ticket #331 (Log is blank if build libraries missing with Qt GUI) closed by Eric Pettersen
fixed: Fixed by setting DYLD_FRAMEWORK_PATH. Not sure if it's the best fix. …
4:27 PM 2016-04-28 edited by Eric Pettersen
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4:26 PM Ticket #322 (Can't mouse select, ctrl key ignored, Qt) closed by Eric Pettersen
fixed: Fixed. On mac, ctrl-left comes out as meta-right; detect that and …

Jun 6, 2016:

2:57 PM FAI created by Greg Couch
2:56 PM DeveloperMeetings edited by Greg Couch
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2:40 PM WikiStart edited by Greg Couch
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2:35 PM WindowsDevReq edited by Greg Couch
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11:22 AM Ticket #339 (RFE: 2D labels wildcard (asterisk or other)) closed by Tom Goddard
fixed: Ok label name "all" now allows modifying or deleting all labels.
11:02 AM Ticket #341 (Improve coincident clipping cap appearance) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: [Chimera-users] …
9:37 AM Ticket #340 (RFE: implement 2dlabels multiframe capability) created by Elaine Meng
Eventually would be nice to have frames argument for fading in/out or …
9:34 AM Ticket #339 (RFE: 2D labels wildcard (asterisk or other)) created by Elaine Meng
Would be useful to implement * or "all" to mean all existing 2D …

Jun 2, 2016:

11:07 AM Ticket #338 (Put EXIF data in saved images, volume thresholds) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke <> Subject: ChimeraX …

Jun 1, 2016:

2:05 PM Ticket #337 (mousemodes breaks nogui mode) closed by Tom Goddard
fixed: Fixed. Made window_sys = None in nogui mode and made mouse modes code …
1:42 PM Ticket #337 (mousemodes breaks nogui mode) created by Greg Couch
importing mousemodes fails due to the missing window_sys variable when …
1:05 PM Ticket #336 (2x scaling errors with Mac retina display) created by Tom Goddard
On a Macbook Pro with retina display (Mac OS 10.11.5) and Qt 5.6.0 the …
11:08 AM Ticket #335 (Set volume eraser clear value) created by matthewd@…
Begin forwarded message: From: "Dougherty, Matthew T" Subject: …
11:07 AM Ticket #334 (Second cursor for group interaction) created by matthewd@…
Begin forwarded message: From: "Dougherty, Matthew T" Subject: …

May 31, 2016:

12:30 PM Ticket #333 (SSE cartoon extensions toward Nterm (no preceding linker) disjoint) created by Elaine Meng
extensions of cartoon SSE representations toward the N-term are …
12:05 PM Ticket #332 (cannot save session) created by Elaine Meng
In today's build UCSF ChimeraX version: 0.1 (2016-05-28) I can't save …

May 27, 2016:

4:49 PM Ticket #331 (Log is blank if build libraries missing with Qt GUI) created by Tom Goddard
On the Mac the log is blank after starting ChimeraX because Qt fails …

May 26, 2016:

6:58 PM Ticket #330 (Display helices as curved tubes) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke <> Subject: Re: ChimeraX …
11:11 AM Ticket #329 (Symmetrical depth cue with clip planes) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: ChimeraX …

May 24, 2016:

2:37 PM Ticket #328 (Command-C does not copy selected text in log in Qt GUI) created by Tom Goddard
Copying selected text from the log panel to the clipboard using …
2:29 PM Ticket #327 (Log stops updating beyond 2 Mbyte size) created by Tom Goddard
The Log panel and file history html panels stop updating or display …
2:12 PM Ticket #319 (traceback using "sop zone") closed by Tom Goddard
fixed: Fixed.
1:46 PM Ticket #324 (File history tool crashes in Qt.) closed by Tom Goddard
fixed: Fixed. Required port from wx to qt.
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