Timeline



Mar 16, 2016:

11:41 PM Ticket #289 (make "usage" more useful for internal aliases) closed by Greg Couch
fixed: Added usage for command aliased to. Now "usage ts list" works too.
3:26 PM Ticket #180 (Side View eye position does not move with drag) closed by Greg Couch
fixed: Fixed. Should already be in daily build.
3:25 PM Ticket #303 (parsing error quoted colornames) closed by Greg Couch
fixed: Fixed. color name parsing wasn't eating the trailing quote.
11:53 AM Ticket #306 (2D labels (title) text aspect ratio and size slaved to that of ...) created by Elaine Meng
The aspect ratio of 2D labels (title) text depends on the aspect ratio …
11:43 AM Ticket #305 (RFE: connect to pyMLP, molecular lipophilicity potential evaluator) created by Elaine Meng
MLP is analogous to electrostatic potential (ESP) and depends on the …

Mar 14, 2016:

9:14 PM Ticket #304 (clipping problems) closed by Tom Goddard
fixed: Fixed. Clip command did not cause redraw if no clip cap was created.
4:11 PM Ticket #304 (clipping problems) created by Greg Couch
A couple of clipping problems: 1) The clip command doesn't take …
9:49 AM Ticket #303 (parsing error quoted colornames) created by Elaine Meng
in today's build, entering commands like these set bgcolor "light …

Mar 10, 2016:

4:27 PM Ticket #69 (Atom spec parsing does not preserve model or chain order) closed by Tom Goddard
fixed: Fixed. Order was following Models.list() ordering which came from an …

Mar 3, 2016:

5:54 PM Ticket #302 (Is installed application linking to build location libraries?) created by Tom Goddard
This question came up several months ago where some crashes appeared …
3:33 PM 2016-03-03 edited by Conrad Huang
(diff)
2:24 PM 2016-03-03 created by Conrad Huang
2:01 PM DeveloperMeetings edited by Conrad Huang
(diff)

Mar 2, 2016:

11:54 AM Ticket #301 (No session restore of global pseudobonds) closed by Eric Pettersen
fixed

Mar 1, 2016:

11:44 AM Ticket #301 (No session restore of global pseudobonds) created by Tom Goddard
Restoring a session does not restore global pseudobonds in today's …

Feb 29, 2016:

2:29 PM Ticket #300 (Control over tool (and data ownership) used when data opened) created by Eric Pettersen
Need a 'tool' keyword in the "open" command to control which tool or …
2:20 PM Ticket #299 (Ability to add tool-specific keywords to open command) created by Eric Pettersen
If a tool needs additional info in order to open/display data, it may …

Feb 26, 2016:

3:19 PM Ticket #231 (Build does not see atomstruct_cpp changes causing crashes) closed by Eric Pettersen
fixed: Added a bunch of dependencies and removed unused headers

Feb 25, 2016:

4:17 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:20 PM 2016-02-25 created by Conrad Huang
12:55 PM Ticket #298 ("color name existing-name" no longer shows definition of built-in colors) closed by Greg Couch
fixed: Separated 'color name' into 'color show <rest of line>' and 'color …
10:39 AM Ticket #298 ("color name existing-name" no longer shows definition of built-in colors) created by Elaine Meng
One used to be able to show the definition of a color with color name …
10:18 AM Ticket #297 (RFE: add cartoon (ribbon) presets) created by Elaine Meng
Would be nice to some cartoon style presets. Some possibilities for …

Feb 23, 2016:

1:41 PM Ticket #248 (Treat quick links as if they were typed) closed by Eric Pettersen
fixed: Actually have the command line execute the command.
1:24 PM Ticket #169 (deleting chain doesn't delete its cartoon) reopened by Tom Goddard
This bug is back. When atoms are deleted and ribbon is not deleted it …
12:53 PM Ticket #296 (MAV: co-variance analysis) created by olibclarke@…
Completely different suggestion which may not be feasible and would …
12:50 PM Ticket #295 (MD: built-in trajectory smoothing) created by falko.jaehnert@…
May I use the opportunity to ask for implementing a functionality in …

Feb 22, 2016:

5:08 PM Ticket #293 (Command line parsing error when Python shell open) closed by Greg Couch
fixed: Worked around by extending wx's PseudoFile class (the base class of …
2:21 PM Ticket #294 (Zoom rectangle mouse mode) created by olibclarke@…
Drag a rectangle and zoom to that rectangle. Maybe this would be a …
2:17 PM Ticket #293 (Command line parsing error when Python shell open) created by Eric Pettersen
open 3fx2 -- start Python shell -- color blue produces: Traceback …
1:48 PM Ticket #292 (Toggle display of all maps) created by olibclarke@…
Oliver wants to be able to hide all maps, then later reshow just the …
11:28 AM Ticket #254 (Crash deleting global pseudobond group) closed by Eric Pettersen
fixed

Feb 19, 2016:

12:16 AM Ticket #291 (mmCIF bad _struct_conn table written by CCP4) closed by Greg Couch
fixed: Log warning saying table was skipped, instead of failing.

Feb 18, 2016:

5:17 PM Ticket #291 (mmCIF bad _struct_conn table written by CCP4) created by Tom Goddard
Oliver Clarke provided the attached mmCIF file written by CCP4 which …
3:25 PM 2016-02-18 edited by Conrad Huang
(diff)
2:41 PM 2016-02-18 edited by Conrad Huang
(diff)
2:24 PM 2016-02-18 edited by Conrad Huang
(diff)
2:09 PM 2016-02-18 edited by Conrad Huang
(diff)
2:07 PM 2016-02-18 edited by Conrad Huang
(diff)
2:06 PM 2016-02-18 created by Conrad Huang
2:06 PM DeveloperMeetings edited by Conrad Huang
(diff)
12:43 PM Ticket #290 (can't select dashed lines) created by Greg Couch
Open 134d, neither the hydrogen bonds nor the missing structure bonds …
11:04 AM Ticket #289 (make "usage" more useful for internal aliases) created by Elaine Meng
I noticed that “usage” isn’t very useful for aliases, e.g. “usage ts” …
9:44 AM Ticket #288 (Circle plots to show pairwise quantities for domains, chains, ...) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: ChimeraX …
9:26 AM Ticket #279 (Hiding ribbons does not redisplay hidden backbone atoms) closed by Conrad Huang
fixed: Actually it's the bonds that do not get restored. Should be fixed now.

Feb 17, 2016:

1:26 PM Ticket #284 (handle mmCIF with missing sequence information) reopened by Tom Goddard
I've attached another mmCIF file copy_1.cif from Oliver Clarke, this …

Feb 16, 2016:

4:25 PM Ticket #284 (handle mmCIF with missing sequence information) closed by Greg Couch
wontfix: So this bug report was good in that support for mmCIF files with an …
4:03 PM Ticket #287 (Image save shortcut, use different file names) created by olibclarke@…
Make icon that saves image use a different image file name each time …
2:20 PM Ticket #286 (Difference maps with local fitting) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: Re: ChimeraX …
2:18 PM Ticket #285 (Optimize map grid size based on fit of atomic model) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: ChimeraX …
12:33 PM Ticket #284 (handle mmCIF with missing sequence information) created by Greg Couch
mmCIF file in #278 is missing the entity_poly_seq table, so the code …
12:30 PM Ticket #278 (Leading spaces in atom names from mmCIF file) closed by Greg Couch
fixed: Added code to strip leading and trailing spaces.
12:18 PM Ticket #283 (Curved helix tubes) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: Possible …
12:15 PM Ticket #282 (Ribbon style editor, scaling and helix/coil/strand cross-sections) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: Possible …
12:09 PM Ticket #281 (Merge command-line and Python shell) created by olibclarke@…
Allow typed Python code in the command-line and/or allow typed …
12:01 PM Ticket #280 (Show density map only near center of view, like Coot) created by olibclarke@…
Oliver asks for map display only near center of view, the typical Coot …
11:43 AM Ticket #277 (Collating log repeats collation messages loading mmCIF) closed by Eric Pettersen
fixed: Missed one of the self._sim_info -> sim_info changes.
10:41 AM Ticket #279 (Hiding ribbons does not redisplay hidden backbone atoms) created by Tom Goddard
open 1b35 show ~cartoon All the residues are shown disconnected with …
10:11 AM Ticket #278 (Leading spaces in atom names from mmCIF file) created by Tom Goddard
The attached mmCIF file (produced by Coot) does not connect any of the …
10:05 AM Ticket #277 (Collating log repeats collation messages loading mmCIF) created by Tom Goddard
Loading an mmcif file repeats the same message "27 messages similar to …
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