Timeline



Nov 7, 2025: Today

12:26 AM Ticket #19311 (ChimeraX bug report submission) created by chimerax-bug-report@…
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Nov 6, 2025: Yesterday

8:39 PM Ticket #19310 (ChimeraX bug report submission) created by chimerax-bug-report@…
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8:38 PM Ticket #19309 (ChimeraX bug report submission) created by chimerax-bug-report@…
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8:37 PM Ticket #19308 (ChimeraX bug report submission) created by chimerax-bug-report@…
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5:48 PM Ticket #19203 (REST server attempting to encode Atom into response) closed by Eric Pettersen
fixed: The JSON was handling the direct return of atomic items, but not if …
4:25 PM 2025-11-6 edited by Tom Goddard
(diff)
4:24 PM 2025-11-6 edited by Tom Goddard
(diff)
4:21 PM DeveloperMeetings edited by Tom Goddard
(diff)
3:54 PM Ticket #19304 (glClear: invalid framebuffer operation) closed by Tom Goddard
duplicate: 5th duplicate of same glClear error from same reporter #19289. Mac …
3:54 PM Ticket #19306 (ffmpeg: Permission Denied) closed by Eric Pettersen
duplicate: Hi Swastik, Thanks for reporting this problem. It is fixed in the …
3:51 PM Ticket #19305 (Crash on Mac waking from sleep) closed by Eric Pettersen
duplicate
3:45 PM Ticket #19307 (Scene needs) created by Elaine Meng
9/25/25 as you said (this is mainly a note to self), cannot delete …
3:45 PM Ticket #19300 (Crash in swap_buffers) closed by Tom Goddard
duplicate: Crash in QOpenGLContext::swapBuffers() after waking from sleep and …
3:41 PM Ticket #19299 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX bug report panel said what we know about this crash: …
3:39 PM Ticket #19298 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX bug report panel said what we know about this crash: …
2:42 PM Ticket #19303 (Crash due to second screen: Cannot change screens) closed by Eric Pettersen
can't reproduce
2:39 PM Ticket #19302 (sequence align: 'StructureSeq' object has no attribute 'atomspec') closed by Eric Pettersen
fixed: Fixed the "sequence align" problem, which might also fix the follow-on …
1:54 PM Ticket #19301 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by Eric Pettersen
duplicate
12:20 PM Ticket #19306 (ffmpeg: Permission Denied) created by sphulera@…
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11:34 AM Ticket #19305 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
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6:01 AM Ticket #19304 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
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4:52 AM Ticket #19303 (Crash due to second screen: Cannot change screens) created by chimerax-bug-report@…
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1:34 AM Ticket #19302 (sequence align: 'StructureSeq' object has no attribute 'atomspec') created by drorn@…
[…] log_06_11_25.html
1:02 AM Ticket #19301 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…
[…]

Nov 5, 2025:

11:39 PM windows-signing edited by Greg Couch
(diff)
11:31 PM Ticket #19300 (Crash in swap_buffers) created by chimerax-bug-report@…
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6:09 PM Ticket #19299 (Crash on Mac waking from sleep) created by oswanson@…
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5:39 PM Ticket #18886 (Associated structure with profile grid sequence is slow) closed by Eric Pettersen
limitation: Well, this is not particularly simple. The association algorithm …
4:20 PM WikiStart edited by Eric Pettersen
(diff)
3:04 PM Ticket #4168 (Show alternate locations simultaneously) closed by Eric Pettersen
fixed: In addition to the previously available "altlocs show" command, the …
12:26 PM Ticket #19298 (Crash on Mac waking from sleep) created by hrishikesh.das@…
[…]
11:30 AM Ticket #19297 (glClear: invalid framebuffer operation) closed by Tom Goddard
duplicate: Same reporter, same bug, #19289. Have seen this before involving usbc …
11:28 AM Ticket #19296 (glClear: invalid framebuffer operation) closed by Tom Goddard
duplicate: Same reporter, same bug, #19289. Have seen this before involving usbc …
11:27 AM Ticket #19291 (glClear: invalid framebuffer operation) closed by Tom Goddard
duplicate: Same reporter, same bug, #19289. Have seen this before involving usbc …
10:30 AM Ticket #19293 (Sequence viewer: lambda needs *args) closed by Eric Pettersen
fixed
9:35 AM Ticket #19297 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
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6:02 AM Ticket #19296 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
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2:18 AM Ticket #19295 (Find Cavities suggestions) created by Tristan Croll
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Nov 4, 2025:

7:09 PM Ticket #19294 (Mutation score scatterplot mouse position wrong.) closed by Tom Goddard
fixed: Fixed. Updated ChimeraX to use matplotlib 3.10.7 instead of 3.10.5 …
7:03 PM Ticket #19294 (Mutation score scatterplot mouse position wrong.) created by goddard@…
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4:35 PM Ticket #19255 (Adding charges to atoms) closed by Greg Couch
fixed: Confirmed that current x86_64 daily build flatpak works.
3:57 PM Ticket #19293 (Sequence viewer: lambda needs *args) created by chimerax-bug-report@…
[…]
2:35 PM Ticket #19292 (Text entry area nearly invisible in dark mode) created by morri361@…
[…] Screenshot from 2025-11-04 17-33-20.png
12:05 PM Ticket #19291 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
[…]
11:00 AM Ticket #19289 (glClear: invalid framebuffer operation) closed by Tom Goddard
duplicate: This OpenGL error on Mac in glClear on expose of status line was …
10:41 AM Dev2025-11-9 created by Tom Goddard
10:40 AM 2025-11-6 created by Tom Goddard
10:39 AM 2025-10-30 edited by Tom Goddard
(diff)
10:38 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:37 AM Ticket #19290 (SEQCROW: reading ORCA output: index 0 is out of bounds for axis 0 with ...) created by chimerax-bug-report@…
[…]
9:15 AM Ticket #19288 (Crash in event loop) closed by Eric Pettersen
can't reproduce
9:14 AM Ticket #19287 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by Eric Pettersen
duplicate
9:06 AM Ticket #19285 (Not a PDB file) closed by Eric Pettersen
not a bug
9:03 AM Ticket #19284 (Crash on Mac waking from sleep) closed by Eric Pettersen
duplicate
8:50 AM Ticket #19282 (save pdb doesn't preserve segid) closed by Eric Pettersen
duplicate: Hi, Yes, ChimeraX currently does not preserve the segment ID. I am …
8:05 AM Ticket #19289 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
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4:33 AM Ticket #19288 (Crash in event loop) created by chimerax-bug-report@…
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12:42 AM Ticket #19287 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
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12:21 AM Ticket #19286 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…
[…]

Nov 3, 2025:

7:51 PM Ticket #19285 (Not a PDB file) created by chimerax-bug-report@…
[…]
7:07 PM Ticket #19284 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
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6:20 PM Ticket #19283 (MemoryError processing surface) created by chimerax-bug-report@…
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3:47 PM Dev2025-11-3 edited by Tom Goddard
(diff)
3:08 PM Dev2025-11-3 edited by Tom Goddard
(diff)
1:42 PM Ticket #19282 (save pdb doesn't preserve segid) created by yoyoq@…
[…]
12:43 PM Ticket #19281 (Crash during Boltz output) closed by Tom Goddard
can't reproduce: I suspect this crash was a graphics driver problem. The last messages …
12:39 PM Ticket #19280 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX bug report panel said what we know about this crash: …
10:41 AM Ticket #19279 (Vina output in ViewDock: KeyError: 'RMSD l.b.') closed by Eric Pettersen
duplicate: Duplicate of #18804
10:38 AM Ticket #19278 (Combine into existing model) closed by Eric Pettersen
not a bug: This no longer raises a traceback.
10:21 AM Ticket #19275 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by Eric Pettersen
duplicate
10:20 AM Ticket #19273 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by Eric Pettersen
duplicate
10:16 AM Ticket #19272 (Closing segmentation cursors: self._positions is None) closed by Eric Pettersen
duplicate: Duplicate of #18753
10:15 AM Ticket #19271 (Closing segmentation cursors: self._positions is None) closed by Eric Pettersen
duplicate: Duplicate of #18753
10:13 AM Ticket #19270 (Crash in event loop) closed by Eric Pettersen
can't reproduce: During memory management on Tahoe
10:12 AM Ticket #19269 (Crash in event loop) closed by Eric Pettersen
can't reproduce
9:51 AM Ticket #19268 (Security Measures ChimeraX) closed by Eric Pettersen
not a bug: Forwarded to licensing address
9:50 AM Ticket #19267 (Closing segmentation cursors: self._positions is None) closed by Eric Pettersen
duplicate: Duplicate of #18753
9:49 AM Ticket #19266 (Closing segmentation cursors: self._positions is None) closed by Eric Pettersen
duplicate: Duplicate of #18753
9:48 AM Ticket #19265 (Closing segmentation cursors: self._positions is None) closed by Eric Pettersen
duplicate: Duplicate of #18753
9:46 AM Ticket #19264 (Closing segmentation cursors: self._positions is None) closed by Eric Pettersen
duplicate: Duplicate of #18753
9:45 AM Ticket #19263 (Closing segmentation cursors: self._positions is None) closed by Eric Pettersen
duplicate: Duplicate of #18753
9:25 AM Ticket #19261 (MemoryError reading trajectory) closed by Eric Pettersen
limitation
8:42 AM Ticket #19281 (Crash during Boltz output) created by jszot@…
[…]
3:31 AM Ticket #19280 (Crash on Mac waking from sleep) created by Z.Zeng-24@…
[…]

Nov 1, 2025:

11:37 PM Ticket #19279 (Vina output in ViewDock: KeyError: 'RMSD l.b.') created by chimerax-bug-report@…
[…]
5:52 PM Ticket #19278 (Combine into existing model) created by chimerax-bug-report@…
[…]
9:11 AM Ticket #19277 (Crash using Save dialog) created by arulviarajesh@…
[…]

Oct 31, 2025:

3:57 PM Ticket #19276 (SEQCROW: read XYZ: not enough arguments for format string) created by ba324@…
[…]
3:38 PM Training edited by Tom Goddard
(diff)
3:22 PM Ticket #19275 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…
[…]
3:22 PM Ticket #19274 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…
[…]
3:22 PM Ticket #19273 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…
[…]
3:17 PM Ticket #18233 (pyproject.toml: tool.chimerax.extra-files fails on second run) closed by Zach Pearson
fixed: Should be fixed in tomorrow's daily build. Tristan's suggested fix worked.
3:17 PM Ticket #17635 (pyproject.toml: more flexible library name search on Windows) closed by Zach Pearson
fixed: Should be fixed in tomorrow's daily build. I changed the way we handle …
2:58 PM Ticket #19272 (Closing segmentation cursors: self._positions is None) created by chimerax-bug-report@…
[…]
2:58 PM Ticket #19271 (Closing segmentation cursors: self._positions is None) created by chimerax-bug-report@…
[…]
11:12 AM Training edited by Tom Goddard
(diff)
8:30 AM Ticket #19270 (Crash in event loop) created by chimerax-bug-report@…
[…]
8:25 AM Ticket #19269 (Crash in event loop) created by chimerax-bug-report@…
[…]
2:17 AM Ticket #19268 (Security Measures ChimeraX) created by Yannik.Hebel@…
[…] [[Image(...)]] [attachment:"Nuvisan_RFI-Information …
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