Timeline



Nov 20, 2015:

3:13 PM WikiStart edited by Tom Goddard
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1:12 PM Hierarchy created by Tom Goddard
12:22 PM WikiStart edited by Tom Goddard
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12:20 PM WikiStart edited by Tom Goddard
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Nov 19, 2015:

3:35 PM 2015-11-19 edited by Conrad Huang
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3:10 PM 2015-11-19 edited by Conrad Huang
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3:08 PM 2015-11-19 edited by Conrad Huang
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2:28 PM 2015-11-19 created by Conrad Huang

Nov 18, 2015:

11:26 AM Ticket #187 (oculus doesn't fail gracefully on Linux) closed by Tom Goddard
fixed: Checked in a fix, but I don't have a linux system to test on.

Nov 17, 2015:

5:52 PM Ticket #187 (oculus doesn't fail gracefully on Linux) created by Greg Couch
Command: oculus on […]
3:18 PM Ticket #185 ("test" command hangs) closed by Tom Goddard
fixed: Fixed. Not sure exactly how. Fixed 5 bugs in running test and that …
2:48 PM Ticket #186 (Can't save jpeg images) created by Tom Goddard
Apparently our Pillow 3.0 does not have jpeg support. open 1a0m save …
2:03 PM Ticket #185 ("test" command hangs) created by Eric Pettersen
The test command hangs in "wait" as it tries to record a movie. Also, …

Nov 16, 2015:

11:14 PM Ticket #184 (seg vault deleting atoms) created by Greg Couch
Starting ChimeraX and executing the test program gives a segmentation …
5:02 PM Ticket #183 (Make pseudobonds end on cartoons) created by Eric Pettersen
Pseudobonds to backbone atoms that are hidden by cartoon end in space …
4:53 PM Ticket #182 (loooong tethers) created by Eric Pettersen
In 1www there are tethers that are distractingly long. For example …
1:54 PM Commands edited by Scooter Morris
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1:53 PM EarlyReleaseRequirements edited by Scooter Morris
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1:47 PM WikiStart edited by Scooter Morris
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10:43 AM DeveloperMeetings edited by Scooter Morris
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10:42 AM 2015-11-16 created by Scooter Morris

Nov 12, 2015:

3:42 PM WikiStart edited by Tom Goddard
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3:09 PM DeveloperMeetings edited by Conrad Huang
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3:07 PM DeveloperMeetings edited by Conrad Huang
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3:07 PM 2015-11-12 created by Conrad Huang

Nov 10, 2015:

3:56 PM Ticket #103 (Atomspec specifying one model in hierarchy) closed by Tom Goddard
fixed: Conrad's fixed atomspec parsing worked correctly. It was another bug …
12:09 PM Ticket #181 ("color byhet" dies on molecular surface) closed by Tom Goddard
fixed: Fixed. Error happened when coloring a surface per-atom using some but …
11:51 AM Ticket #103 (Atomspec specifying one model in hierarchy) reopened by Elaine Meng
I'm afraid this is not fixed. For example, open 4hhb surf ligand …
10:22 AM Needed Command Functionality edited by Elaine Meng
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10:18 AM Ticket #181 ("color byhet" dies on molecular surface) created by Elaine Meng
For example, open 1gcn disp color byhet (OK so far....) surf color …

Nov 9, 2015:

7:31 PM WikiStart edited by Tom Goddard
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7:30 PM WikiStart edited by Tom Goddard
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7:27 PM WikiStart edited by Tom Goddard
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7:27 PM WikiStart edited by Tom Goddard
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7:26 PM WikiStart edited by Tom Goddard
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4:39 PM Needed Command Functionality edited by Elaine Meng
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Nov 6, 2015:

3:20 PM Needed Command Functionality edited by Elaine Meng
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3:08 PM Needed Command Functionality edited by Elaine Meng
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3:01 PM Needed Command Functionality edited by Elaine Meng
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1:51 PM Needed Command Functionality edited by Elaine Meng
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1:49 PM Needed Command Functionality edited by Elaine Meng
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12:57 PM Needed Command Functionality edited by Elaine Meng
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11:13 AM Ticket #179 (cartoon hides too many atoms of nucleic acids) closed by Eric Pettersen
fixed: Okay, with the revamped is_backbone functionality, Chimera 2 hides the …
10:02 AM Ticket #180 (Side View eye position does not move with drag) created by Elaine Meng
Currently, dragging the square in the Side View tool does not move the …

Nov 5, 2015:

5:14 PM 2015-11-05 edited by Tom Ferrin
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4:51 PM DeveloperMeetings edited by Tom Ferrin
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4:51 PM 2015-11-05 created by Tom Ferrin
9:39 AM Needed Command Functionality edited by Elaine Meng
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8:44 AM Needed Command Functionality edited by Elaine Meng
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Nov 4, 2015:

12:11 PM WikiStart edited by Tom Goddard
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11:24 AM Needed Command Functionality edited by Eric Pettersen
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11:21 AM Needed Command Functionality edited by Eric Pettersen
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Nov 3, 2015:

3:45 PM Ticket #135 (Main window does not have focus on start-up) closed by Eric Pettersen
fixed: Apparently I mistakenly closed #138 when I meant to close this. Fixed …
3:07 PM Ticket #179 (cartoon hides too many atoms of nucleic acids) created by Elaine Meng
Maybe the default behavior of cartoon should be to not hide any atoms …
1:43 PM Ticket #178 (Error selecting an atom with the mouse) closed by Eric Pettersen
fixed
1:38 PM Needed Command Functionality edited by Elaine Meng
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1:25 PM Needed Command Functionality edited by Elaine Meng
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12:39 PM Ticket #138 (Command-line does not receive ctrl-A, ctrl-E ... when graphics pane ...) reopened by Tom Goddard
This bug has returned.
12:36 PM Needed Command Functionality edited by Elaine Meng
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12:19 PM Ticket #178 (Error selecting an atom with the mouse) created by Tom Goddard
Traceback (most recent call last): File …
11:32 AM Needed Command Functionality edited by Elaine Meng
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11:31 AM Needed Command Functionality edited by Elaine Meng
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10:18 AM Ticket #177 (Ribbon end-cap shows striped marks) created by Tom Goddard
The ribbon end-cap of 1a0m chain A, residue 2 shows striped marks as …

Nov 2, 2015:

12:44 PM Ticket #176 (Make silhouette edges fade with depth) created by Tom Goddard
Begin forwarded message: From: Oliver Clarke Subject: [Chimera-users] …

Oct 30, 2015:

5:13 PM Ticket #175 (2x slower opening 3j3q) created by Tom Goddard
Timing opening 3j3q.cif (2.4 million atoms) until it is displayed now …
4:55 PM Ticket #174 (Chimera starts with no tools) created by Tom Goddard
About half the time Chimera starts with just a black graphics area and …

Oct 29, 2015:

3:34 PM DeveloperMeetings edited by Conrad Huang
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3:34 PM 2015-10-29 created by Conrad Huang
11:39 AM Ticket #173 (command case comparison needs to be more sophisticated) created by Eric Pettersen
Downcasing what the user types for keyword matching is problematic in …
11:21 AM Ticket #171 (built-in alias delayed registration failed) closed by Greg Couch
fixed: Not sure when this was fixed, probably when internal alias function …

Oct 28, 2015:

9:28 PM Ticket #136 (Deleting atoms does not update ribbon) closed by Conrad Huang
fixed: Fixed by [develop ab70efd]. Set the "ribbon changed" state for …
4:10 PM Ticket #172 (specifying surface model wrongly specifies its enclosed atoms) created by Elaine Meng
When I have atomic model #1 and its surfaces for chains A-D are models …

Oct 27, 2015:

3:51 PM Ticket #118 (Render images in nogui mode) closed by Tom Goddard
fixed: Working on Linux using OSMesa (off-screen mesa) with LLVM driver.
3:50 PM Ticket #158 ("list" command broken, gives traceback) closed by Tom Goddard
fixed: Fixed some weeks ago.
10:35 AM Ticket #171 (built-in alias delayed registration failed) created by Elaine Meng
In today's daily build, trying to use "ribbon" or "ts" (or using …

Oct 26, 2015:

6:39 PM EarlyReleaseRequirements edited by Tom Goddard
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2:37 PM Ticket #103 (Atomspec specifying one model in hierarchy) closed by Conrad Huang
fixed: Code was too smart for itself. If there are no submodels, the code …

Oct 23, 2015:

10:53 AM Ticket #170 (PyOpenGL exception when exiting in nogui mode) closed by Tom Goddard
fixed: Fixed. Code was trying to delete the default framebuffer (0) when exiting.
10:51 AM Needed Command Functionality edited by Elaine Meng
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10:46 AM Needed Command Functionality edited by Elaine Meng
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