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Timeline
Jul 21, 2017:
- 7:21 PM Ticket #762 (Histogram mouse over does not work on Mac retina display) closed by
- fixed: I put in a hack to fix this by multiplying mouse positions by 2 on …
- 7:18 PM Ticket #762 (Histogram mouse over does not work on Mac retina display) created by
- Mousing over a histogram of pseudobond lengths does not highlight the …
Jul 20, 2017:
- 4:37 PM Ticket #761 (Need user interface to be able to choose which tools autostart) closed by
- fixed
- 4:37 PM Ticket #761 (Need user interface to be able to choose which tools autostart) created by
- per summary
- 3:11 PM Ticket #759 (matchmaker broken (couldn't find alignment module)) closed by
- fixed: Seems to be working now... tested in 2017-07-19 build,
- 9:31 AM Ticket #760 (ChimeraX/Isolde error: can't import clipper) created by
- […]
Jul 19, 2017:
- 2:42 PM Ticket #588 (unstable tube orientation in morph) closed by
- fixed: Fixed in 5f5b11940. The unstable helix is six residues …
Jul 18, 2017:
- 5:11 PM Ticket #757 (Save multimodel PDB error) closed by
- fixed: Same problem as #758
- 5:09 PM Ticket #758 (save pdb crashes) closed by
- fixed: PDB saving was basically redeclaring the "models" keyword as a …
- 2:52 PM Ticket #759 (matchmaker broken (couldn't find alignment module)) created by
- I don't think it matters what data, but here's an example: open 2mnr …
- 1:48 PM WikiStart edited by
- (diff)
- 1:41 PM Ticket #754 (file-history thumbnails don't account for saving selected-only or ...) closed by
- wontfix: To create a correct file history icon when saving a part of a model …
- 1:24 PM Ticket #758 (save pdb crashes) created by
- open 1r7z save test.pdb model #1.1 crashes Fatal Python error: …
- 1:19 PM Ticket #756 (file-history logic doesn't account for multi-save with model name/ID ...) closed by
- fixed: Made it so nothing is added to file history in cases where the save …
- 12:56 PM Ticket #757 (Save multimodel PDB error) created by
- open 1r7z save test[ID].pdb model #1 Traceback (most recent call …
- 9:56 AM Ticket #756 (file-history logic doesn't account for multi-save with model name/ID ...) created by
- Example with NMR ensemble: open 1g1p save ~/Desktop/junk[ID].pdb ... …
Jul 17, 2017:
- 5:44 PM 2017-07-06 edited by
- (diff)
- 1:33 PM Ticket #755 (Fetch mmcif files from rcsb instead of erratic www.pdb.org) closed by
- fixed: Changed fetching of mmCIF and PDB files to use files.rcsb.org instead …
- 1:04 PM Ticket #755 (Fetch mmcif files from rcsb instead of erratic www.pdb.org) created by
- ChimeraX fetches mmCIF files from www.pdb.org. That site is currently …
- 11:00 AM Ticket #754 (file-history thumbnails don't account for saving selected-only or ...) created by
- The logic for saving an image in file history doesn’t account for …
Jul 16, 2017:
Jul 15, 2017:
Jul 14, 2017:
- 12:56 PM BundleReformatting edited by
- (diff)
- 10:36 AM Ticket #726 (opening CFTR structure and multiple sequence alignment in either order ...) closed by
- fixed: Okay, fixed, but it brings up another issue. The resulting …
Jul 13, 2017:
- 10:34 PM BundleReformatting edited by
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- 8:12 PM BundleReformatting edited by
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- 8:01 PM BundleReformatting edited by
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- 5:39 PM Ticket #731 (Side View starts too small (can only see checkboxes)) closed by
- fixed: Fixed in [develop 8239d1612].
- 4:34 PM Ticket #753 (Support saving trajectories into multiple PDB files) created by
- Is there a way to save a trajectory to multiple files? I could save …
- 4:27 PM Ticket #636 (Side View does not renormalize) closed by
- fixed: Should be fixed by [develop 1b2e98ec3].
Jul 12, 2017:
- 10:29 PM BundleReformatting edited by
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- 10:16 PM BundleReformatting edited by
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- 10:02 PM BundleReformatting edited by
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- 9:44 PM BundleReformatting edited by
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- 2:31 PM Ticket #601 (Add ability to write PDB) closed by
- fixed: The call-back-into-Python stuff isn't working, but that isn't essential.
- 1:15 PM BundleReformatting edited by
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- 12:13 PM BundleReformatting edited by
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- 11:55 AM BundleReformatting edited by
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Jul 7, 2017:
- 9:15 PM BundleReformatting edited by
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- 8:51 PM BundleReformatting edited by
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- 8:39 PM BundleReformatting edited by
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- 7:15 PM BundleReformatting edited by
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- 5:49 PM BundleReformatting edited by
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- 5:11 PM BundleReformatting edited by
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- 3:55 PM WikiStart edited by
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Jul 6, 2017:
- 1:53 PM 2017-07-06 created by
- 1:41 PM DeveloperMeetings edited by
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- 1:40 PM BundleReformatting edited by
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- 1:38 PM BundleReformatting edited by
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- 1:06 PM BundleReformatting edited by
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- 11:55 AM BundleReformatting edited by
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- 10:31 AM BundleReformatting edited by
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Jul 5, 2017:
- 4:44 PM WikiStart edited by
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- 4:41 PM WikiStart edited by
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- 12:16 PM BundleReformatting edited by
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- 3:36 AM Ticket #752 (CIF/PDB I/O problems) created by
- I'm looking at a fairly large structure (4ljz) which has zinc ions in …
Jul 3, 2017:
- 5:53 PM Ticket #699 (core.commands.rename issues) closed by
- fixed: Fixed the model-panel issues of this ticket.
- 3:02 PM Ticket #751 (contacts command fails) created by
- 'contacts #1' fails when running 'debug test'. Easily reproducible …
Jun 30, 2017:
- 5:20 PM BundleReformatting edited by
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- 4:45 PM BundleReformatting edited by
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- 1:19 PM Ticket #749 (Session ids for different pseudobonds are identical) closed by
- fixed: Needed to set up the pseudobond session IDs earlier in the save …
Jun 29, 2017:
- 12:23 PM Ticket #750 (could not save dcd, at least for PDB entries opened with "coord true") closed by
- fixed: Fixed. I made specifying models in the save dcd command optional -- …
- 11:20 AM Ticket #750 (could not save dcd, at least for PDB entries opened with "coord true") created by
- I tried both NMR ensembles 1g1p and 1plx. Example open 1g1p coord t …
Jun 28, 2017:
- 6:55 PM Ticket #749 (Session ids for different pseudobonds are identical) created by
- When I try to save a session with 3d labels on pseudobonds the label …
- 1:35 PM Ticket #634 ("windowsize" as first command after starting ChimeraX does not work) closed by
- fixed: Need to force Rapid Access off for accurate window size
- 1:22 PM Ticket #748 (trying to color single selected pseudobond colors the whole pseudobond ...) closed by
- fixed: Fixed. Problem was that the selection includes the pseudobond group …
- 12:16 PM Ticket #747 (Model panel close of submodel closes everything) closed by
- fixed
- 12:12 PM Ticket #748 (trying to color single selected pseudobond colors the whole pseudobond ...) created by
- Example: open 2gbp view ions zoom .8 (Ctrl-click to select one of the …
- 11:43 AM Ticket #747 (Model panel close of submodel closes everything) created by
- open 5igy Click model #1.1 hydrogen bonds in Model Panel and press …
- 8:10 AM Ticket #746 (Global pseudobonds not hidden if model hidden) closed by
- fixed: Fixed
Jun 27, 2017:
- 5:23 PM Ticket #742 (hbonds selrestrict "both" or atomspec gives traceback) closed by
- fixed: Testing a Collection for equality against a string wasn't returning …
- 5:16 PM Ticket #743 (hbonds intramol f gives traceback) closed by
- fixed: Fixed typo
- 5:10 PM Ticket #744 (hbonds retain true makes retained H-bonds into tater tots) closed by
- fixed: Radius setting was badly messed up.
- 2:53 PM Ticket #745 ("hbonds" doesn't like ensembles, I guess) closed by
- fixed
- 2:51 PM Ticket #746 (Global pseudobonds not hidden if model hidden) created by
- Whereas pseudobonds in per-structure groups (e.g. metal-coordination …
- 2:22 PM Ticket #745 ("hbonds" doesn't like ensembles, I guess) created by
- I tried 2 different ensembles, seemingly unrelated: 1g1p and 2nbk …
- 1:39 PM Ticket #614 (Add support for zones and attributes in atom spec) closed by
- fixed: First implemention has been committed bb266f8. Probably …
- 11:54 AM Ticket #744 (hbonds retain true makes retained H-bonds into tater tots) created by
- If I use "hb retain t" the pre-existing H-bonds become really fat and …
- 11:41 AM Ticket #743 (hbonds intramol f gives traceback) created by
- Example: open 1zik hb intramol f hbonds intraMol false Traceback …
- 11:36 AM Ticket #742 (hbonds selrestrict "both" or atomspec gives traceback) created by
- However, selrestrict "cross" or "any" seem to be working fine. …
Jun 26, 2017:
- 3:47 PM Ticket #533 (Hydrogen bond finder) closed by
- fixed: For the purposes of this ticket, this is completed. For final …
- 3:15 PM Ticket #726 (opening CFTR structure and multiple sequence alignment in either order ...) reopened by
- The problem is that a temporary StructureSeq in the C++ layer gets …
- 10:14 AM Ticket #741 (style command "dashes" but not "pseudobondRadius" works with pb model spec) closed by
- fixed: Fixed. Just forgot to make this work when I added support for …
- 9:54 AM Ticket #741 (style command "dashes" but not "pseudobondRadius" works with pb model spec) created by
- The style command "dashes" option works with pb model specified …
Jun 23, 2017:
- 4:51 PM Ticket #726 (opening CFTR structure and multiple sequence alignment in either order ...) closed by
- fixed: Was calling .front() (and more importantly, .pop_front()) on an empty …
Jun 22, 2017:
- 6:53 PM BundleReformatting edited by
- (diff)
- 6:06 PM Ticket #740 (inter-model pbonds selection highlighting not shown initially) closed by
- fixed: Fixed. Global pseudobond groups didn't know when the atoms connected …
- 5:55 PM Ticket #739 (Opening files from shell command line opens them twice) closed by
- fixed: Fixed. Mac OS generates QFileOpenEvents for command-line arguments …
- 5:24 PM Ticket #740 (inter-model pbonds selection highlighting not shown initially) created by
- Example: open 1zik struts @ca sel pbonds (or: sel @ca) ...the …
- 3:51 PM Ticket #728 (previous (closed) model displays briefly when new model is opened) closed by
- fixed: Fixed by Tom G, who said (via email): I fixed the ghost molecule …
- 3:27 PM 2017-06-22 created by
- 2:08 PM DeveloperMeetings edited by
- (diff)
- 1:12 PM Ticket #739 (Opening files from shell command line opens them twice) created by
- If I start ChimeraX from mac command line also specifying the input …
- 12:02 PM Ticket #737 (cannot turn off sharp boundaries in pre-existing molecular surface) closed by
- fixed: Fixed.
- 11:38 AM Ticket #738 (RFE: some way of smoothing molecular surface cusps) created by
- Sometimes I get cusps on the molecular surface which I assume may be …
- 10:58 AM Ticket #737 (cannot turn off sharp boundaries in pre-existing molecular surface) created by
- Users are unlikely to try this, so you may want to lower priority. If …
- 10:37 AM Ticket #720 (Make space navigator work on Windows) closed by
- fixed: Buttons working on Windows now.
Jun 21, 2017:
- 4:18 PM Ticket #543 (Help viewer right-click "save link" doesn't work) closed by
- fixed: Should be fixed by 7e6e00a56.
- 11:44 AM Ticket #534 (Full toolshed semantics) closed by
- fixed: Alpha 2 functionality is done. Tickets #735 and #736 were created for …
- 11:42 AM Ticket #736 (Need tool for managing active tools) created by
- The toolshed used to have functionality for listing active tools. …
- 11:37 AM Ticket #735 (Need access to Python from Javascript in HTML pages) created by
- Using HTML pages as UI for tools may sometimes require access to …
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