Opened 8 years ago
Closed 8 years ago
#759 closed defect (fixed)
matchmaker broken (couldn't find alignment module)
Reported by: | Elaine Meng | Owned by: | Conrad Huang |
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Priority: | major | Milestone: | |
Component: | Sequence | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
I don't think it matters what data, but here's an example:
open 2mnr
open 4enl
matchmaker #2 to #1
Traceback (most recent call last):
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/cmd_line/tool.py", line 178, in execute
cmd.run(cmd_text)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 2411, in run
_used_aliases=used_aliases, log=log))
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 2896, in call
return self.cmd.run(text, _used_aliases=_used_aliases, log=log)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 2390, in run
result = ci.function(session, kw_args)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/match_maker/match.py", line 624, in cmd_match
gap_open_other=ogap, compute_ss=compute_ss, verbose=verbose)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/match_maker/match.py", line 307, in match
matrix, alg, gap_open, gap_extend, dssp_cache, align_kw)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/match_maker/match.py", line 60, in align
from chimerax.seqalign.align_algs import NeedlemanWunsch
ModuleNotFoundError: No module named 'chimerax.seqalign.align_algs'
ModuleNotFoundError: No module named 'chimerax.seqalign.align_algs'
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/match_maker/match.py", line 60, in align
from chimerax.seqalign.align_algs import NeedlemanWunsch
Change History (2)
comment:1 by , 8 years ago
Owner: | changed from | to
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comment:2 by , 8 years ago
Resolution: | → fixed |
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Status: | assigned → closed |
Seems to be working now... tested in 2017-07-19 build,
Seems like a hiccup with bundle installation.