![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Mar 16, 2017:
Mar 15, 2017:
- 2:23 PM Ticket #582 (Log panel does not scroll, Mac) created by
- After command "debug test" which puts 20 pages of out put in the log, …
Mar 14, 2017:
- 11:05 AM Ticket #581 (colornames that start with "pale" get confused with "palette") created by
- Colornames that start with "pale" get mixed up with the "palette" …
- 10:49 AM Ticket #580 ("rungs hide" traceback if scope broader than original "rungs" command) closed by
- fixed: Fixed.
- 10:20 AM Ticket #580 ("rungs hide" traceback if scope broader than original "rungs" command) created by
- ... at least that's my guess, since if I use the same atomspec (or …
Mar 13, 2017:
- 1:54 PM Ticket #236 (Saving a session with an unknown model type gives an error) closed by
- fixed: It no longer throws a RuntimeError, instead it logs a warning and …
- 1:50 PM Ticket #458 (ChimeraX fetched data deleted by Mac OS upgrade) closed by
- fixed: The fetched data location was moved ton ~/Downloads/Chimerax/
Mar 9, 2017:
- 5:31 PM Ticket #579 (Support for tools extending 'save' command) created by
- Analogous to 'open' command
- 3:16 PM 2017-03-09 edited by
- (diff)
- 2:34 PM 2017-03-09 created by
- 2:07 PM DeveloperMeetings edited by
- (diff)
- 2:05 PM FAI edited by
- (diff)
- 1:28 PM Ticket #578 (Toolshed "download stats" links do nothing in ChimeraX browser) created by
- Since they're flash, they probably can't be made to work directly, but …
- 12:54 PM Ticket #568 (Exceptions crash console in Windows build) closed by
- fixed: It _is_ fixed by Python 3.6
Mar 8, 2017:
Mar 7, 2017:
- 4:11 PM Ticket #576 (Use SSBOND records) created by
- As per Tristan: "Phenix does not write out CONECT records for …
Mar 6, 2017:
- 7:15 PM Ticket #575 (Status line message causes OpenGL error) created by
- The following commands result in an OpenGL error caused by the status …
- 4:06 PM Ticket #567 (Add logger to bundle API for registering things) closed by
- fixed: Added logger argument to register_command and register_selector …
- 3:26 PM Ticket #574 (cofr problem after matchmaker) closed by
- fixed: Fixed a few days ago, but I guess we have not had a working daily …
- 3:24 PM Ticket #574 (cofr problem after matchmaker) created by
- open 2gbp open 2fw0 mm #2 to #1 ...OK so far, but traceback when …
- 2:58 PM Ticket #573 (add ribbon "surface" capping) created by
- After adding the clip_cap attribute to ribbons (two separate "= …
- 2:49 PM Ticket #572 (Failed dependency in last night's Linux build) created by
- […]
Mar 5, 2017:
- 11:06 AM Ticket #562 (Update to Python 3.6 and PyQt 5.8) closed by
- fixed: Merged into develop branch.
Mar 2, 2017:
- 9:46 PM Ticket #571 (Save volume global settings in sessions) created by
- On Mar 2, 2017, at 2:27 PM, Elaine Meng <> wrote: Hi Tom, Are these …
- 5:15 PM Ticket #526 (Spurious extra quotes in logged command) closed by
- fixed: Fixed.
- 2:41 PM Ticket #570 (command "open formats" broken) closed by
- fixed: Fixed.
- 12:45 PM Ticket #570 (command "open formats" broken) created by
- open formats Traceback (most recent call last): File …
- 11:47 AM Ticket #569 (Show selected atoms under transparent surface) created by
- Current selection outline code does not associate a depth with the …
- 10:02 AM Ticket #568 (Exceptions crash console in Windows build) created by
- […]
Mar 1, 2017:
- 11:33 PM Ticket #567 (Add logger to bundle API for registering things) created by
- The bundle API prevents logging errors when registering commands, file …
- 11:29 PM Ticket #546 (generalize 'help http:....' to 'open http:...') closed by
- fixed: Done.
- 4:22 PM Ticket #541 ("help URL" doesn't work with https URL) closed by
- fixed: Works.
- 1:27 PM Ticket #378 (Atom spec parsing stops at non-whitespace) closed by
- fixed: The "save" command usage was already changed to put the filename …
- 11:52 AM Ticket #565 ("sym" copy new model changes cartoon from original) closed by
- fixed
- 11:28 AM Ticket #558 (opening session closes help viewer) closed by
- fixed: Fixed in a0010e9.
Feb 28, 2017:
- 4:50 PM Ticket #566 (drag select weirdness) closed by
- fixed: Fixed. Drag select was not taking account of positions of moved models.
- 3:40 PM Ticket #566 (drag select weirdness) created by
- In the attached session, the selected strand has an unselected strand …
- 11:13 AM Ticket #565 ("sym" copy new model changes cartoon from original) created by
- Basically 2 helices that are adjacent but shown as separate helices in …
Feb 27, 2017:
- 6:01 PM Ticket #529 (ChimeraX runs out of memory opening 2a06) closed by
- fixed: Missing backbone nitrogen between residues 20 and 21 on chains B and O …
- 1:55 PM 2017-02-27 edited by
- (diff)
- 1:51 PM 2017-02-27 edited by
- (diff)
- 11:54 AM 2017-02-27 created by
- 11:21 AM DeveloperMeetings edited by
- (diff)
- 10:26 AM Ticket #417 (Help viewer suggestions) closed by
- fixed: Yay! So much nicer, thanks. I'll close this as fixed since the …
Feb 23, 2017:
- 6:54 PM Ticket #563 (opening and closing sideview on Windows causes crash) closed by
- fixed: Duplicate of #491. Fixed.
- 6:52 PM Ticket #491 (Crash closing side view and opening shell) closed by
- fixed: Fixed. Side view Drawing for eye and field of view lines and clip …
- 4:34 PM Ticket #507 (Make "help movie" show docs instead of list of subcommands) closed by
- fixed: Fix by looking for local help file even for commands without a …
- 4:33 PM Ticket #564 ("Help... Contact Us" link broken) closed by
- fixed
- 3:51 PM Ticket #564 ("Help... Contact Us" link broken) created by
- I am pretty sure this used to work, but menu: Help... Contact Us gives …
- 3:19 PM 2017-02-23 created by
- 2:57 PM Ticket #235 (Compressed session files should have suffix .cxs instead of .cxs.gz) closed by
- fixed: .cxs file are gzip files now.
- 2:53 PM Ticket #563 (opening and closing sideview on Windows causes crash) created by
- With no model opened, starting SideView and then closing it causes a …
- 2:42 PM Ticket #283 (Curved helix tubes) closed by
- fixed: Many other ribbon tickets still open.
- 2:07 PM Ticket #562 (Update to Python 3.6 and PyQt 5.8) created by
- Update to latest releases of standard packages
- 2:03 PM DeveloperMeetings edited by
- (diff)
- 10:35 AM Ticket #561 (cartoon should show abutting helices as separate instead of continuous) created by
- I.e. should show a short coil-type connector from the last CA of the …
Feb 22, 2017:
- 11:42 AM Ticket #557 (session windowsize doesn't work) closed by
- can't reproduce
Feb 21, 2017:
- 11:24 PM Ticket #560 (Warning opening any standard mmCIF file) closed by
- fixed: Fixed. Simplified code interface, so this bug is less likely to occur …
- 2:52 PM Ticket #560 (Warning opening any standard mmCIF file) created by
- Every mmCIF file I open now produces this warning: skipping …
- 1:38 PM Ticket #559 (cartoon cross section applied to whole model) closed by
- not a bug: Elaine: Not a bug. Cartoon style settings apply to the whole model, …
- 1:32 PM Ticket #559 (cartoon cross section applied to whole model) created by
- When I open 1gcn and use the following command: cart style :12-17 xs …
Feb 20, 2017:
- 8:59 AM Ticket #558 (opening session closes help viewer) created by
- Currently opening a session closes everything that was open. I …
- 8:43 AM Ticket #557 (session windowsize doesn't work) created by
- When I opened a session file, it detected that my current windowsize …
Feb 18, 2017:
Feb 17, 2017:
- 6:44 PM Ticket #495 (Toolshed cannot install tool, write permission error) closed by
- fixed: The toolshed code now asks the user whether to install for "Just me", …
- 6:41 PM Ticket #439 (Signing windows ChimeraX fails) closed by
- fixed: Fixed. First, the signing certificate is imported into the "Personal" …
- 6:33 PM Ticket #532 (Saving and restoring sessions) closed by
- fixed: After discussion, with Greg doing all the coding, we changed the API …
- 6:27 PM Ticket #198 (finish session molecular data save/restore) closed by
- fixed: I made a first pass using Python-level code to save ribbon attributes. …
Feb 16, 2017:
- 9:09 AM Ticket #556 (Re: Unable to save figure) closed by
- duplicate: Yes, that is indeed the problem, so you could fix it yourself. I …
- 9:04 AM Ticket #556 (Re: Unable to save figure) created by
- […]
- 8:50 AM Ticket #555 (Unable to save figure) closed by
- fixed: Sorry, that was an oversight on my part. It will be fixed in …
- 8:22 AM Ticket #555 (Unable to save figure) created by
- […]
Feb 15, 2017:
- 6:28 PM Ticket #554 (Ribbon: RuntimeWarning: invalid value encountered in less d[d < ...) created by
- open 3bfu issues this warning to the log …
- 4:24 PM Ticket #553 (tube helix with stripes 5cbf) created by
- Another possibly weird case is 5cbf. One of the helix tubes has …
- 2:16 PM Ticket #552 (cartoon 4y7j crashes ChimeraX) created by
- I guess the summary says it all. It's initially displayed as spheres. …
- 2:04 PM Ticket #551 (cartoon tube "armadillos" in 3jac) created by
- In general cartoon tubes seem to work well, but I did find one …
- 12:38 PM Ticket #550 (Toolshed install of Clipper bundle does nothing) created by
- Clicking the Download button on the Clipper bundle using the Toolshed …
- 12:21 PM Ticket #549 (Mac middle mouse drag: QNSView mouseDragged: Internal mouse button ...) created by
- Dragging with middle mouse on Mac with Qt 5.7.1 gives log warnings …
Feb 14, 2017:
- 12:28 PM Ticket #548 (ChimeraX does not quit on Mac) closed by
- fixed: Fixed. Seems to be a Qt 5.7.1 bug. Worked around it by adding an …
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