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Timeline
Dec 15, 2016:
- 3:49 PM 2016-12-15 edited by
- (diff)
- 2:06 PM Ticket #507 (Make "help movie" show docs instead of list of subcommands) created by
- Want "help movie" to show the movie command manual page in the html …
- 1:52 PM DeveloperMeetings edited by
- (diff)
- 1:52 PM 2016-12-15 created by
- 1:47 PM 2016-12-08 edited by
- (diff)
Dec 14, 2016:
- 12:30 PM Ticket #506 (pip install overrides LD_LIBRARY_PATH) created by
- If I define a little bash script, chimera-python, wrapping ChimeraX's …
Dec 13, 2016:
- 3:19 PM Ticket #505 (Molecular surface (coloring?) breaks session restore) closed by
- fixed: Fixed. Session restore code was producing arrays of C++ pointers that …
- 11:17 AM Ticket #505 (Molecular surface (coloring?) breaks session restore) created by
- I had a session with a molecule, molecular surface, and a dx file …
Dec 12, 2016:
- 10:27 AM Ticket #504 (Changing the .selected attribute of Drawing objects doesn't propagate ...) created by
- TL;DR: changing the .selected attribute of Drawing objects doesn't …
Dec 9, 2016:
- 4:26 PM 2016-12-08 edited by
- (diff)
- 1:07 PM Ticket #503 (Allow selection atoms through holes in mesh surface) created by
- Want ctrl-click to select atoms behind a mesh if click is not on a …
- 1:03 PM Ticket #501 (bysequence or byentity keywords) closed by
- fixed: Uncle. I replace color command bysequence with byentity and …
Dec 8, 2016:
- 3:52 PM 2016-12-08 edited by
- (diff)
- 3:33 PM 2016-12-08 edited by
- (diff)
- 3:29 PM Ticket #502 (findclash misleading and wrong) created by
- ChimeraX findclash gives different results from Chimera findclash and …
- 2:54 PM DeveloperMeetings edited by
- (diff)
- 2:53 PM 2016-12-08 created by
- 12:26 PM Ticket #501 (bysequence or byentity keywords) created by
- I find the "bysequence" and "sequence" keywords (in commands "color" …
Dec 7, 2016:
- 4:22 PM Ticket #498 (blank atomspecs cause errors) closed by
- fixed: Reverted to grako 3.16.5.
- 2:27 PM FAI edited by
- (diff)
- 12:46 PM FAI edited by
- (diff)
- 11:44 AM Ticket #214 (Save image dialog bitrot) closed by
- wontfix: Since the switch to Qt, there has been no per-image-format options.
- 10:27 AM Ticket #411 (Copyright messes up Mac installer html) closed by
- fixed: Looks like it's fixed.
- 10:18 AM Ticket #486 (Blast Protein GUI won't run) closed by
- fixed: Fixed in 2724b10. Somehow a class name got mangled in one …
- 10:15 AM Ticket #150 (Ribbon slow creation) closed by
- fixed: Ribbon display for 5a5b now takes about 2-3 seconds. Still not ideal …
Dec 6, 2016:
- 4:28 PM Ticket #407 (Update status line during long computations) reopened by
- The fix of calling Qt prcoessEvents(ExcludeUserInputEvents) …
- 11:08 AM Ticket #500 (Allow selecting through holes in mesh surface) created by
- Begin forwarded message: From: Tristan Croll Subject: Suggestion: …
Dec 5, 2016:
- 5:59 PM Ticket #299 (Ability to add tool-specific keywords to open command) closed by
- fixed: Done. Added to metadata.
- 2:36 PM Ticket #499 (Error at startup on Linux) closed by
- fixed: Should be fixed.
- 2:21 PM Ticket #492 (Log help links broken) closed by
- fixed
- 12:55 PM 2016-12-01 edited by
- (diff)
- 12:54 PM 2016-12-01 edited by
- (diff)
- 12:48 PM Ticket #499 (Error at startup on Linux) created by
- ChimeraX gives the following error on startup on Ubuntu 16.04 LTS. $ …
- 12:31 PM Ticket #498 (blank atomspecs cause errors) created by
- If the atomspec is blank, none of the special color names (byhet, …
- 12:04 PM Ticket #497 (Using tug atoms or ISOLDE on Mac cannot find OpenMM CPU platform) closed by
- fixed: Fixed tug atoms to set OPENMM_PLUGINS_DIR on Mac. Tristan, you will …
- 11:58 AM Ticket #497 (Using tug atoms or ISOLDE on Mac cannot find OpenMM CPU platform) created by
- OpenMM can only find the reference platform on Mac when using ISOLDE …
- 11:20 AM Ticket #496 (Toolshed does not indicate if tool was successfully installed) created by
- Pressing the Download button on the ISOLDE toolshed entry gives no …
- 11:17 AM Ticket #495 (Toolshed cannot install tool, write permission error) created by
- The Mac ChimeraX installs in /Applications as root and toolshed cannot …
- 7:46 AM Ticket #494 (Dropping one floating window into another and then tearing it away ...) created by
- […]
Dec 1, 2016:
- 5:20 PM 2016-12-01 edited by
- (diff)
- 2:47 PM 2016-12-01 edited by
- (diff)
- 2:45 PM 2016-12-01 edited by
- (diff)
- 2:42 PM 2016-12-01 edited by
- (diff)
- 2:37 PM 2016-12-01 edited by
- (diff)
- 2:13 PM DeveloperMeetings edited by
- (diff)
- 2:13 PM 2016-12-01 created by
- 12:52 PM Ticket #493 (measure phi/psi/chi/omega angles) created by
- Add Chimera1-like support for getting/setting phi/psi/chi/omega …
Nov 30, 2016:
- 2:51 PM Ticket #492 (Log help links broken) created by
- Recent changes to HTML scheme handling have broken help links in the log.
- 10:25 AM Ticket #491 (Crash closing side view and opening shell) created by
- Crash on Linux after showing side view, then closing side view, then …
- 12:43 AM Ticket #490 (Alias with missing argument gives cryptic error) closed by
- fixed: Fixed error message.
Nov 29, 2016:
- 5:13 PM Ticket #490 (Alias with missing argument gives cryptic error) created by
- Using an alias without an argument gives a cryptic error message. It …
- 5:10 PM Ticket #487 (error trying to use perframe with alias) closed by
- invalid: This won't work because perframe knows nothing about expanding …
- 2:01 PM Ticket #489 (Don't show clipping caps for near/far clip planes.) created by
- Might want to not compute clipping caps for near/far clip planes. The …
- 1:50 PM Ticket #488 (Model panel view button should not enable clip planes) created by
- The Model Panel View button currently enables near/far clip plane as …
Nov 28, 2016:
- 4:37 PM Ticket #487 (error trying to use perframe with alias) created by
- Maybe it's user error, but I can't get my first perframe example in …
- 12:46 PM Ticket #486 (Blast Protein GUI won't run) created by
- Although I could run blast via command, showing the Blast Protein GUI, …
Nov 23, 2016:
- 5:32 PM Ticket #485 (Want collada export with hierarchy) created by
- Sam Hertig was exporting scenes from Chimera 1 using Collada for …
- 2:57 PM 2016-11-14 edited by
- (diff)
- 11:04 AM Ticket #461 (Ribbons don't update when coordinate set changes) closed by
- fixed: Fixed.
Nov 21, 2016:
- 7:25 PM Ticket #484 (Make contact graph mouse button behavior match graphics window (select ...) created by
- Currently contact graph ctrl-left and right mouse button presses bring …
- 7:19 PM Ticket #483 (Smart display should use different colors for chains) created by
- Opening 4hhb (and other molecules with < 5) chains causes all the …
- 7:14 PM Ticket #482 (Contact graph hide/show chains ignores ribbons) created by
- Clicking on a contact graph chain node is supposed to hide the other …
- 5:18 PM 2016-11-14 edited by
- (diff)
- 2:16 PM FAI edited by
- (diff)
- 1:12 PM Ticket #481 (struts ignoring pbonds and accumulating inappropriately) closed by
- fixed: Fixed. Main problem was that backbone atoms hidden by ribbon were not …
- 10:22 AM Ticket #481 (struts ignoring pbonds and accumulating inappropriately) created by
- The "struts" command calculation is not paying attention to displayed …
Nov 17, 2016:
- 5:32 PM Ticket #479 (select sequence option also selected waters) closed by
- fixed: Fixed. Code saw the two waters in 1i50 chain K and decided all the …
- 4:02 PM Ticket #480 (maybe add "entity" (same molecular entity) operator to atomspecs) created by
- A sequence option was recently added to the "select" command and it is …
- 3:57 PM Ticket #479 (select sequence option also selected waters) created by
- open 1i50 select sequence /k ...shouldn't that only select the …
- 3:06 PM Ticket #478 (showing contacts residue plot broken today) closed by
- fixed: Fixed typo.
- 2:19 PM Ticket #478 (showing contacts residue plot broken today) created by
- After using "contacts", choosing any edge-context menu's "Residue …
Nov 16, 2016:
- 11:29 PM Ticket #472 (ChimeraX "open" command format-specification issues) closed by
- fixed: Part A was fixed by getting the fetch code to use the data format's …
- 6:10 PM Ticket #477 (cartoon: some tube-coil joins not so hot) created by
- Some of the tube-helix to coil junctions are pretty poor, e.g. 1a0s …
- 3:56 PM Ticket #239 (File... Save GUI save image adds ".cxs" before image suffix) closed by
- fixed: Must be dyslexic. Added logging the filename when saving an image via …
Nov 15, 2016:
- 4:56 PM Ticket #476 (Command history dialog appears at startup) created by
- The first time ChimeraX run after it is installed for the first time …
- 4:38 PM 2016-11-14 edited by
- (diff)
- 4:38 PM Ticket #447 (Transparency command on volumes undone when contour level changes) closed by
- fixed: Fixed
- 2:47 PM 2016-11-14 edited by
- (diff)
- 2:47 PM Ticket #449 (Volume planes on multiple data display is erratic) closed by
- wontfix: There are only 58 z planes in this data. So the command volume …
- 1:52 PM 2016-11-14 edited by
- (diff)
- 1:52 PM 2016-11-14 edited by
- (diff)
- 1:40 PM Ticket #327 (Log stops updating beyond 2 Mbyte size) closed by
- fixed: Conrad put in code to work around this that saves the log to a …
- 1:35 PM 2016-11-14 edited by
- (diff)
- 1:31 PM Ticket #49 (Better warning message if oculus fails to start) closed by
- fixed: Fixed.
- 11:58 AM Ticket #475 (crazy tube helices after dssp on 4hhb) created by
- open 4hhb rainbow dssp cartoon style modeh tube (the rainbow isn’t …
- 11:42 AM Ticket #474 ("save session filename" (no suffix) gives traceback) closed by
- fixed: Fixed.
- 11:29 AM Ticket #474 ("save session filename" (no suffix) gives traceback) created by
- As I understand it there are 3 ways to specify saving a session: save …
- 10:48 AM 2016-11-14 edited by
- (diff)
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