![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Feb 4, 2016:
- 7:19 PM Ticket #270 (atom in_chain false after session restore) created by
- If I save a molecule in a session, then restore the session, …
- 6:05 PM 2016-02-04 edited by
- (diff)
- 4:47 PM Ticket #269 (running of stack deleting bonds) created by
- "open 101d format pdb" causes ChimeraX to segfault. Using gdb, the …
- 4:15 PM Ticket #268 (cartoon short strands not smoothed or smoothable) created by
- Cartoon of short strands is not smoothed regardless of "adjust" …
- 3:11 PM DeveloperMeetings edited by
- (diff)
- 3:11 PM 2016-02-04 created by
Feb 2, 2016:
- 2:04 PM Ticket #267 (Mistaken "bound ligand" in 1fav) created by
- In 1fav, residues 123 and 124 are being treated as bound ligand when …
Feb 1, 2016:
- 6:21 PM Ticket #266 (CA-only structure not using pseudobonds) created by
- 1gbp Should be connecting the CAs with missing-structure pseudobonds, …
- 4:51 PM Ticket #220 (every time I restore session (STL-only) it adds another Model Panel) closed by
- fixed
- 4:48 PM Ticket #260 (nogui mode on Mac gives black text on black background) closed by
- fixed: Explicitly set foreground (text) color instead of using default.
- 4:18 PM Ticket #263 (Traceback opening unknown pdb id code) closed by
- fixed: Added code to see if returned mmCIF data from PDB URL is actually a …
- 2:18 PM Ticket #265 (cartoon (ribbon) helix inside-out problems) created by
- In the current ChimeraX it is fairly common to see places where the …
- 12:10 PM Ticket #264 (Atoms permanently hidden by ribbon) created by
- Showing ribbons then deleting all but CA atoms, then hiding ribbons, …
- 12:05 PM Ticket #263 (Traceback opening unknown pdb id code) created by
- Opening a pdb id code that doesn't exist should give a simple error …
Jan 28, 2016:
- 6:53 PM Ticket #258 (No gui mode broken on mac) closed by
- fixed: Fixed. Made Lighting parameter exist even when Renderer does not.
- 6:37 PM Ticket #38 (Fix Hydra Mac install target prereq version numbers) closed by
- wontfix: Hydra retired.
- 6:37 PM Ticket #112 (Graphics crash on Mac, large surfaces) closed by
- worksforme: Crash report does not say what machine this graphics driver crash was …
- 6:28 PM Ticket #1 (Port BLAST web service to Hydra) closed by
- wontfix: Hydra no longer developed.
- 6:26 PM Ticket #134 (Smoother solvent excluded surface atom boundaries) closed by
- fixed: Done some months ago. Looks beautiful. Iteratively subdivides triangles.
- 6:23 PM Ticket #7 (Can't type spaces in Hydra command-line) closed by
- wontfix: Hydra project retired.
- 6:22 PM Ticket #45 (Make half bond coloring work per-bond) closed by
- fixed: Done some months ago.
- 6:17 PM Ticket #262 (Open 1m4x displays nothing, ribbon vertices are NaN) created by
- open 1m4x displays nothing. The "info" command shows the bounding …
- 6:16 PM Ticket #261 (ribbon hide gives error) closed by
- fixed: Alias invocation needs to save Command object to allow for underlying …
- 6:08 PM Ticket #122 (Shortcut to select all text in Log) closed by
- fixed: Add "Select All" to context menu.
- 6:04 PM Ticket #261 (ribbon hide gives error) created by
- open 1a0m ribbon hide Traceback (most recent call last): File …
- 5:52 PM Ticket #241 (HTML new-tab links do nothing in ChimeraX viewer) closed by
- fixed: <a> tags with target="_blank" are now opened in an external web browser.
- 5:50 PM Ticket #245 (External links in Quick Start Guide do nothing) closed by
- fixed: Bug was due to the <a> tags having target="_blank", so a new …
- 5:48 PM Ticket #257 (sym 2f43 gives traceback) closed by
- fixed: Fixed. 2f43 had some matrices applied to one set of chains, and …
- 5:09 PM Ticket #256 ("color seq" ignores "halfbond true"?) closed by
- fixed: Fixed. The color command halfbond option was being ignored if the …
- 4:55 PM Ticket #260 (nogui mode on Mac gives black text on black background) created by
- Text in nogui mode is unreadable on Mac OS 10.10 in a terminal with …
- 4:44 PM Ticket #259 (Tools should not save in sessions by default) created by
- Elaine points out that the contacts tool restores in sessions …
- 4:41 PM Ticket #258 (No gui mode broken on mac) created by
- cx --nogui Offscreen rendering not available 0.00% done: Initializing …
- 3:01 PM Ticket #240 (Rainbow command: Missing required "objects" positional argument) closed by
- fixed: Fixed by continuing to parse required positional arguments with an …
- 2:41 PM DeveloperMeetings edited by
- (diff)
- 2:40 PM 2016-01-28 created by
- 1:55 PM Ticket #257 (sym 2f43 gives traceback) created by
- open 2f43 sym #1 ... reports assembly 1: Assemblies for 2f43: 1 = …
- 1:11 PM Ticket #256 ("color seq" ignores "halfbond true"?) created by
- open 2gbp color cyan targ b half f rainbow res targ a half true style …
- 12:46 PM Ticket #255 (command logging messed up) closed by
- fixed: Fixed.
- 11:02 AM Ticket #246 (Commands separated by ";" are parsed before any are run) closed by
- fixed: Fixed. Changes affected error reporting.
- 9:34 AM Ticket #255 (command logging messed up) created by
- In today's build the logged commands all have 5 characters right after …
Jan 26, 2016:
- 7:03 PM PseudoBonds created by
- 7:01 PM WikiStart edited by
- (diff)
- 1:09 PM WikiStart edited by
- (diff)
- 1:03 PM WikiStart edited by
- (diff)
Jan 25, 2016:
- 5:01 PM Ticket #254 (Crash deleting global pseudobond group) created by
- open 1bna open 1bna.pb (file attached) close crashes in …
- 12:03 PM GrantAims edited by
- (diff)
- 12:00 PM GrantAims edited by
- (diff)
- 12:00 PM GrantAims edited by
- (diff)
- 11:59 AM GrantAims created by
- 11:52 AM WikiStart edited by
- (diff)
- 10:35 AM Ticket #253 (ribbon 3j3f gives error) created by
- Opening rna structure 3j3f gives an error apparently related to ribbon …
Jan 21, 2016:
Jan 19, 2016:
- 6:26 PM Ticket #252 (Nucleotide display) created by
- Andreas Prlic wants nucleotide slab display for rendering images for …
- 1:04 PM Ticket #251 (Session save/restore slow) created by
- Session save of 3j3q takes 44 seconds and restore takes 26 seconds (on …
Jan 15, 2016:
- 7:10 PM Ticket #250 (Logger collapse similar causes thread related crashes) created by
- Andreas Prlic's image capture script was causing numerous thread …
- 9:44 AM 2016-01-14 edited by
- (diff)
Jan 14, 2016:
- 11:01 PM Ticket #247 (help hide does not show documentation) closed by
- fixed
- 3:13 PM Ticket #249 (command links in help viewer should be treated as if typed) created by
- After a discussion at today's Chimera meeting, we decided that when a …
- 3:11 PM Ticket #248 (Treat quick links as if they were typed) created by
- Have clicked quick links appear in the command line and command history.
- 3:03 PM DeveloperMeetings edited by
- (diff)
- 3:01 PM 2016-01-14 edited by
- (diff)
- 2:27 PM 2016-01-14 edited by
- (diff)
- 2:24 PM 2016-01-14 created by
- 12:26 PM Ticket #247 (help hide does not show documentation) created by
- The "help hide" command is supposed to display the user guide …
- 10:50 AM 2016-01-11 edited by
- (diff)
Jan 13, 2016:
- 6:52 PM 2016-01-11 edited by
- (diff)
- 6:32 PM 2016-01-11 edited by
- (diff)
- 6:32 PM 2016-01-11 edited by
- (diff)
- 2:41 PM Ticket #242 (cannot use command: sel @c5') closed by
- fixed: Added ' and " as legal characters in atomspec names. May have …
- 2:15 PM Ticket #230 (Too many warning dialogs reading trajectory of PDB files) closed by
- fixed: Moved collation up to a higher level (models.open), so all these …
Jan 12, 2016:
- 7:48 PM Ticket #244 (hide tether if ribbon segment hidden?) closed by
- fixed: Fixed. Tethers are displayed only for residues with ribbon displayed.
- 6:11 PM Ticket #243 (tether color lag?) closed by
- fixed: Fixed in daily build. Was only updating tethers if there was a …
- 5:57 PM Ticket #246 (Commands separated by ";" are parsed before any are run) created by
- open 1a0m ; color #1 blue does not color the model blue. The problem …
- 5:41 PM Ticket #245 (External links in Quick Start Guide do nothing) created by
- Clicking links in the Quick Start Guide that go to sites on the web do …
- 4:44 PM 2016-01-11 edited by
- (diff)
- 4:43 PM 2016-01-11 edited by
- (diff)
- 3:36 PM Ticket #244 (hide tether if ribbon segment hidden?) created by
- Not sure if this is hard, but seems like if you undisplay part of the …
- 3:22 PM Ticket #243 (tether color lag?) created by
- I infer tether color is supposed to track the CA color, but it does …
- 3:18 PM Ticket #242 (cannot use command: sel @c5') created by
- open 1bna sel @c5' gives: Traceback (most recent call last): File …
- 12:18 PM Ticket #241 (HTML new-tab links do nothing in ChimeraX viewer) created by
- Links that would open a new tab in other browsers do nothing in the …
- 10:33 AM 2016-01-11 edited by
- (diff)
Jan 11, 2016:
- 4:04 PM Ticket #240 (Rainbow command: Missing required "objects" positional argument) created by
- When the rainbow command is issued with no arguments it gives the …
- 2:01 PM 2016-01-11 edited by
- (diff)
- 1:22 PM 2016-01-11 edited by
- (diff)
- 11:10 AM Ticket #237 (command "delete solvent" gives error) closed by
- fixed: Removed unnecessary and buggy code that tried to get unique set of pointers
- 10:42 AM Ticket #238 (cannot intersect built-in selector with atom names) closed by
- fixed: Fixed. Oops! Broke this at the end of last week when I was …
- 10:17 AM Ticket #239 (File... Save GUI save image adds ".cxs" before image suffix) created by
- If I choose menu: File... Save, then "Image File" with format:PNG, and …
- 9:52 AM 2016-01-11 edited by
- (diff)
- 9:30 AM Ticket #238 (cannot intersect built-in selector with atom names) created by
- commands like "show helix & @n,ca,c,o" or "show @n,ca,c,o & protein" …
- 9:25 AM Ticket #237 (command "delete solvent" gives error) created by
- open anything with solvent, use command "delete solvent" Traceback …
Jan 8, 2016:
- 4:38 PM Ticket #236 (Saving a session with an unknown model type gives an error) created by
- Saving a session with an unknown model type fails with an error. It …
- 4:32 PM Ticket #234 (Error saving session with molecular surface) closed by
- fixed: Fixed. I found the table in core/init.py that lists where classes …
- 4:25 PM Ticket #235 (Compressed session files should have suffix .cxs instead of .cxs.gz) created by
- Summary says it all.
- 4:22 PM Ticket #234 (Error saving session with molecular surface) created by
- open 1a0m surf save ~/Desktop/test.cxs Traceback (most recent call …
Jan 7, 2016:
- 5:26 PM 2016-01-11 edited by
- (diff)
- 5:26 PM 2016-01-11 edited by
- (diff)
- 5:19 PM 2016-01-11 edited by
- (diff)
- 5:07 PM 2016-01-11 edited by
- (diff)
- 5:06 PM 2016-01-11 edited by
- (diff)
- 5:03 PM 2016-01-11 edited by
- (diff)
- 4:51 PM 2016-01-11 edited by
- (diff)
- 4:43 PM 2016-01-11 edited by
- (diff)
- 4:05 PM 2016-01-11 edited by
- (diff)
- 4:00 PM 2016-01-11 edited by
- (diff)
- 3:58 PM 2016-01-11 edited by
- (diff)
- 3:50 PM DeveloperMeetings edited by
- (diff)
- 3:49 PM DeveloperMeetings edited by
- (diff)
- 3:49 PM 2016-01-11 created by
- 3:36 PM Ticket #233 (Does not start first time run on Mac) created by
- After downloading a ChimeraX daily build from the web and starting it, …
- 2:58 PM 2016-01-07 edited by
- (diff)
- 2:45 PM 2016-01-07 edited by
- (diff)
- 2:23 PM 2016-01-07 created by
- 2:08 PM DeveloperMeetings edited by
- (diff)
Jan 5, 2016:
- 3:54 PM Ticket #232 (Model panel slows down movie recording) created by
- Model panel slows down movie recording when I display a sequence of …
Note:
See TracTimeline
for information about the timeline view.
