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Timeline
Jun 4, 2015:
- 3:04 PM 2015-6-4 edited by
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- 12:16 PM DeveloperMeetings edited by
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- 12:15 PM 2015-6-4 created by
Jun 2, 2015:
- 6:10 PM Ticket #89 (Atom deletion is very slow) reopened by
- Deleting chain 0 (65,000 atoms) from pdb 1jj2 (100,000) takes 95 …
- 1:08 PM Ticket #87 (Deleting atoms causes crash in atomstruct::Atom.remove_bond()) closed by
- fixed: Needed to iterate through a _copy_ of the atom's bond list as I remove …
- 1:07 PM Ticket #89 (Atom deletion is very slow) closed by
- fixed: Implemented delete_atoms(). Still need to properly delete pseudobonds.
- 11:06 AM Ticket #97 (Make one pseudobond manager per session) created by
- Currently there is one pseudobond manager for all sessions in the C++ …
Jun 1, 2015:
- 7:03 PM Ticket #96 (Make orthoplanes and box volume display use lighting) created by
- Currently orthoplanes does not use lighting. Graham Johnson suggested …
- 6:48 PM Ticket #95 (Ambient occlusion makes solid style volume a white cube) closed by
- fixed: Fixed. Only draw depth of opaque models.
- 6:36 PM Ticket #95 (Ambient occlusion makes solid style volume a white cube) created by
- Enabling multishadows with command "light soft" causes solid style …
- 6:34 PM Ticket #94 (Soft lighting with solid volume rendering gives OpenGL error) closed by
- fixed: Fixed. Fixed this error. Now soft lighting makes solid volumes …
- 6:16 PM Ticket #90 (Error when exiting with command-q) closed by
- fixed: On Mac, wasn't making the binding to the callback that in turn calls …
- 5:23 PM Ticket #94 (Soft lighting with solid volume rendering gives OpenGL error) created by
- Traceback (most recent call last): File …
- 5:05 PM Ticket #91 (Copy from Log panel gives error) closed by
- fixed: Fixed by skipping the event if the widget doesn't support the …
- 3:58 PM Ticket #93 (Drag and drop panel gives an error) created by
- Dragging and dropping the Log panel or Mouse Modes panel or Side View …
- 3:24 PM Needed Command Functionality edited by
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- 3:23 PM Needed Command Functionality edited by
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- 2:55 PM Ticket #92 (Error with selection and silhouette edges) closed by
- fixed: This glBlitFramebuffer() error is caused by using render buffer …
- 2:43 PM Ticket #92 (Error with selection and silhouette edges) created by
- Get the following traceback when silhouette edges enabled and atom …
- 2:40 PM Ticket #91 (Copy from Log panel gives error) created by
- Using key command-c to copy selected text from the Log panel gives the …
- 2:28 PM Ticket #90 (Error when exiting with command-q) created by
- Exiting with key press command-q on Mac gives an error to the shell …
May 29, 2015:
- 7:26 PM Ticket #89 (Atom deletion is very slow) created by
- When deleting atoms from a molecule each atom delete causes all …
- 7:20 PM Ticket #88 (Pseudobonds are not deleted when atoms are deleted) created by
- When deleting chain A of 2bbv (delete /a) a crash follows when …
- 7:17 PM Ticket #87 (Deleting atoms causes crash in atomstruct::Atom.remove_bond()) created by
- Opening 1grl and then deleting chain A with command "delete /a" causes …
- 4:49 PM Ticket #86 (Chimera hangs after splash screen) created by
- Today about 5 of 25 starts of Chimera 2 (from a shell) resulted in the …
- 4:41 PM Ticket #54 (Make an icon for the Chimera 2 app) closed by
- fixed: Conrad made an icon which is the Chimera icon with a 2 over it.
- 4:40 PM Ticket #71 (Will command keywords be written with camel-case in user documentation?) closed by
- fixed: Yes camel case for the docs was decided at a Chimera meeting a week ago.
- 4:22 PM Ticket #66 (Log scrolls to top when resized) closed by
- fixed: Apparently HistoryBack() on the HTML window keeps the scrolling at …
- 4:05 PM Ticket #43 (parse_mmCIF_file() tries to import structaccess within C++ and fails) closed by
- wontfix: Moot now that PDBio will no longer be creating blobs.
- 4:03 PM Ticket #67 (Error dialog taller than screen, no obvious way to close it) closed by
- fixed: Long errors by removing their central lines and replacing them with "…"
- 4:01 PM Ticket #76 (Typing p or n in command line activates history without ctrl key) closed by
- fixed
- 3:53 PM Ticket #77 (Can't paste into command-line with Cmd-V) closed by
- fixed: Required the implementation of an Edit menu
May 28, 2015:
- 6:17 PM Ticket #85 (Open mmcif is 2x slower than yesterday, 3j3q) created by
- Opening mmcif 3j3q (2.4 million atoms) takes 16 seconds on my mac, but …
- 4:38 PM Ticket #75 (Closing side view panel gives error.) closed by
- fixed: Changed the workaround to the more permanent fix of preventing the …
May 27, 2015:
- 5:55 PM Ticket #84 (End residue of secondary structure not found) closed by
- fixed: Fixed in [develop 2e66f98].
- 5:36 PM Ticket #82 (Crash on exit) closed by
- fixed: Needed to force destruction of chains and coord sets while the …
- 5:35 PM Ticket #68 (Make command keywords case insensitive) closed by
- fixed: Resolved as user can type any case for keywords. And that the …
- 5:33 PM Ticket #78 (open command misleading error message) closed by
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fixed:
open xyzzynow gives the error:Missing filename suffix… - 4:15 PM Ticket #84 (End residue of secondary structure not found) created by
- I get an unending stream of modal error dialogs saying "End residue of …
- 2:42 PM Ticket #80 (ReleaseMouse wx error) closed by
- fixed: Fixed. The sequence of events for a double click is: button …
- 10:56 AM Ticket #83 (Importing PyTables HDF5 wrapper generates BytesWarning) created by
- Opening an HDF5 density map (file suffix .cmap) generates a couples …
May 26, 2015:
- 5:59 PM Ticket #81 (Atom spec #1.1 includes #1.2, 1.3, ...) closed by
- fixed: Fixed model hierarchy spec matching. Was matching if initial levels …
- 1:39 PM Ticket #82 (Crash on exit) created by
- Chimera 2 seems to crash on exit maybe 1 in 20 times. This crash was …
- 12:55 PM Ticket #81 (Atom spec #1.1 includes #1.2, 1.3, ...) created by
- With 3 molecular models #1.1, 1.2 and 1.3 the command color pink …
- 11:27 AM Ticket #80 (ReleaseMouse wx error) created by
- Starting Chimera 2 and repeatedly clicking in the empty graphics …
May 21, 2015:
- 5:22 PM Ticket #79 (Report errors to log instead of shell) closed by
- fixed: Done. Just writes to the logger using the info() method instead of …
- 5:20 PM Ticket #79 (Report errors to log instead of shell) created by
- Redirect tracebacks to the log panel. Tracebacks generated by menu …
- 3:14 PM EarlyReleaseRequirements edited by
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- 2:57 PM DeveloperMeetings edited by
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- 2:57 PM 2015-5-21 created by
May 20, 2015:
- 6:10 PM Ticket #78 (open command misleading error message) created by
- The open command gives a misleading error message when opening a file …
- 5:03 PM Ticket #77 (Can't paste into command-line with Cmd-V) created by
- Pasting with focus in the command-line with Cmd-V (on Mac) does …
- 4:08 PM Ticket #76 (Typing p or n in command line activates history without ctrl key) created by
- Hard to use the command line now because typing a "p" or an "n" goes …
- 2:01 PM Ticket #75 (Closing side view panel gives error.) created by
- Pressing the close window button on the side view panel gives the …
- 1:58 PM Ticket #74 (Atom spec parsing eats following file path.) created by
- Parsing does not work for a command requiring an atom spec followed by …
May 19, 2015:
- 4:30 PM Ticket #73 (Selection outline shifted, zoom dependent) closed by
- fixed: Kind of fixed. Will likely require further study to understand the …
- 4:16 PM Ticket #73 (Selection outline shifted, zoom dependent) created by
- The selection outline on an atom doesn't exactly match the boundary of …
- 11:47 AM EarlyReleaseRequirements edited by
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- 11:43 AM Needed Command Functionality edited by
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- 9:54 AM Needed Command Functionality edited by
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- 9:32 AM Needed Command Functionality edited by
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- 9:06 AM Needed Command Functionality edited by
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- 9:00 AM Needed Command Functionality edited by
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May 18, 2015:
- 3:28 PM Needed Command Functionality edited by
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- 3:12 PM Needed Command Functionality edited by
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- 3:09 PM Needed Command Functionality edited by
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- 3:00 PM Needed Command Functionality edited by
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- 2:12 PM Needed Command Functionality edited by
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- 12:34 PM Needed Command Functionality edited by
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- 12:32 PM Needed Command Functionality edited by
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- 12:24 PM Needed Command Functionality edited by
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- 11:53 AM Needed Command Functionality edited by
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- 10:56 AM Needed Command Functionality edited by
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May 15, 2015:
- 10:00 AM Needed Command Functionality edited by
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- 9:58 AM Needed Command Functionality edited by
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May 14, 2015:
- 4:14 PM Needed Command Functionality edited by
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- 3:36 PM DeveloperMeetings edited by
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- 3:30 PM 2015-5-14 created by
- 1:58 PM Needed Command Functionality edited by
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- 1:55 PM Needed Command Functionality edited by
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- 1:51 PM Needed Command Functionality edited by
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- 1:32 PM Needed Command Functionality edited by
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- 1:14 PM Ticket #65 ("help log" says log is not a command name) closed by
- fixed
- 12:47 PM Needed Command Functionality edited by
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- 12:42 PM Needed Command Functionality edited by
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- 11:54 AM Needed Command Functionality edited by
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May 13, 2015:
- 12:38 PM Ticket #72 (Make install fails in src/apps/Chimera2/mkinfo.py, Session has no ...) closed by
- fixed: Fixed in the current git, 6c2f87de87b56404f5a97be23f5042e4a63ed96a.
- 11:00 AM Ticket #72 (Make install fails in src/apps/Chimera2/mkinfo.py, Session has no ...) created by
- make install in chimera2/src dies in apps/Chimera2 with …
May 12, 2015:
- 11:39 AM Needed Command Functionality edited by
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- 11:14 AM Needed Command Functionality edited by
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- 11:12 AM SurfaceCategories edited by
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May 11, 2015:
May 9, 2015:
- 4:34 PM SurfaceCategories edited by
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May 8, 2015:
May 7, 2015:
- 5:23 PM SurfaceCategories edited by
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- 3:29 PM DeveloperMeetings edited by
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- 3:28 PM 2015-5-7 created by
- 2:24 PM 2015-5-6 edited by
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- 12:35 PM Needed Command Functionality edited by
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May 6, 2015:
- 5:55 PM DeveloperMeetings edited by
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- 5:54 PM 2015-5-6 created by
- 2:57 PM Needed Command Functionality edited by
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- 12:04 PM Needed Command Functionality edited by
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- 11:25 AM Needed Command Functionality edited by
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May 5, 2015:
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