![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
#85 closed defect (fixed)
Open mmcif is 2x slower than yesterday, 3j3q
| Reported by: | Tom Goddard | Owned by: | Greg Couch |
|---|---|---|---|
| Priority: | minor | Milestone: | |
| Component: | Performance | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | chimera |
Description
Opening mmcif 3j3q (2.4 million atoms) takes 16 seconds on my mac, but yesterday took 9 seconds. It may be the secondary structure processing code that was added yesterday.
Change History (4)
comment:1 by , 10 years ago
comment:2 by , 10 years ago
Speed up mmCIF secondary structure assignment. Faster than PDBio now. There is an outstanding issue on how to generate ss_id's for sheets. They are different between the PDB and the mmCIF code.
comment:3 by , 10 years ago
| Resolution: | → fixed |
|---|---|
| Status: | new → closed |
Resolved that ss_ids will be different between PDB and mmCIF readers. The problem is that some files duplicate the ss data and the PDB and mmCIF readers discard different ones.
comment:4 by , 10 years ago
| Component: | Molecular Data → Performance |
|---|
Note:
See TracTickets
for help on using tickets.
On Linux, it is approximately 60% slower due to the secondary structure code.