Timeline



Apr 18, 2026:

6:56 PM Ticket #20191 (Extract allele frequency from fetched uniprot variants info) created by Tom Goddard
Would be interesting to see allele frequency and minor allele …
5:25 PM Ticket #20190 (ChimeraX bug report submission) created by srr131@…
[…]
5:02 PM Ticket #20189 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
5:03 AM Ticket #20188 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
1:45 AM Ticket #20187 (ChimeraX bug report submission) created by chimerax-bug-report@…
[…]

Apr 17, 2026:

5:22 PM Ticket #20186 (Make a mutation score manager GUI) closed by Tom Goddard
fixed: Initial version done. The GUI has a list of the mutation set name …
5:16 PM Ticket #20186 (Make a mutation score manager GUI) created by Tom Goddard
Currently opening a mutation score data set (.csv file) shows a …
9:46 AM Ticket #20185 (ChimeraX bug report submission) created by chimerax-bug-report@…
[…]
9:13 AM Ticket #20182 (Minimize: Could not find typename for atom) closed by Eric Pettersen
can't reproduce: Possible duplicate of #19923
1:25 AM Ticket #20184 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]

Apr 16, 2026:

11:06 PM Ticket #20183 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
10:40 PM Ticket #20182 (Minimize: Could not find typename for atom) created by chimerax-bug-report@…
[…]
4:32 PM Ticket #20180 (Crash in swap_buffers exposing status line during Mac wakeup) closed by Tom Goddard
duplicate: Qt 6.9 bug crashing in swap_buffers on status line expose. Seems …
4:31 PM Ticket #20179 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: Qt bug, possibly dragging a tool window.
4:30 PM Ticket #20178 (Crash in redraw during volume histogram change in glBufferSubData) closed by Tom Goddard
limitation: Crash in OpenGL graphics showing a 1024 by 1024 by 320 map, probably a …
4:28 PM Ticket #20177 (Crash in redraw during volume histogram change in glBufferSubData) closed by Tom Goddard
limitation: OpenGL crash probably out of memory. User had many 1 Gbyte maps open …
4:26 PM Ticket #20176 ("sym" command: tflist is None) closed by Tom Goddard
fixed: Fixed. User tried to apply symmetry to an atomic model using an EMDB …
4:20 PM Ticket #20174 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) closed by Tom Goddard
duplicate: This crash was in PySide as seen by Shiboken and PySide in the crash …
4:08 PM Ticket #20171 (Crash in swap_buffers when status line exposed Mac Qt 6.9.2) closed by Tom Goddard
duplicate: Qt 6.9 bug. Crash in OpenGL swap_buffers.
2:56 PM Ticket #20166 (Ubuntu: Can't install ISOLDE: "not compatible: wrong platform") closed by Greg Couch
fixed: The installation should work now. I've fixed the symptom, but not the …
12:38 PM Ticket #20181 (An issue with using ChimeraX) created by Huihui.Mu@…
[…] …
8:51 AM Ticket #20180 (Crash in swap_buffers exposing status line during Mac wakeup) created by chimerax-bug-report@…
[…]
7:49 AM Ticket #20179 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]
7:48 AM Ticket #20178 (Crash in redraw during volume histogram change in glBufferSubData) created by chimerax-bug-report@…
[…]
7:39 AM Ticket #20177 (Crash in redraw during volume histogram change in glBufferSubData) created by chimerax-bug-report@…
[…]
5:47 AM Ticket #20176 ("sym" command: tflist is None) created by chimerax-bug-report@…
[…]
12:34 AM Ticket #20175 (SEQCROW: open ORCA .out: operands could not be broadcast together) created by tangyihan@…
[…] QM-XTB_optTS.out

Apr 15, 2026:

11:48 PM Ticket #20174 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) created by chimerax-bug-report@…
[…]
7:04 PM Ticket #20173 (Cannot load Python) created by chimerax-bug-report@…
[…]
4:50 PM Ticket #20158 (Bad model table in Boltzgen mmCIF file) closed by Eric Pettersen
fixed: Issue a warning and ignore the table if bad indexing. Fix: …
2:51 PM Ticket #20169 (Volume colors outside range inverted) closed by Tom Goddard
duplicate: This was fixed in October 2025 in the current ChimeraX 1.11. …
1:51 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
1:51 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
1:11 PM Ticket #20172 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
12:48 PM Ticket #20171 (Crash in swap_buffers when status line exposed Mac Qt 6.9.2) created by chimerax-bug-report@…
[…]
9:54 AM ChangeLog edited by Eric Pettersen
(diff)
9:45 AM Ticket #20170 (KVFinder on old MacOS) closed by Eric Pettersen
limitation
5:18 AM Ticket #20170 (KVFinder on old MacOS) created by chimerax-bug-report@…
[…]
3:52 AM Ticket #20169 (Volume colors outside range inverted) created by z.campbell@…
[…] color_bug_image.png

Apr 14, 2026:

2:54 PM Ticket #20167 (mutationscores heatmap: UFuncOutputCastingError) closed by Tom Goddard
fixed: Fixed. Willow sent me the .csv file and it has scores named …
1:22 PM Dev2026-03-20 created by Tom Goddard
1:22 PM 2026-4-16 created by Tom Goddard
1:21 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:19 PM Ticket #20165 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: This ChimeraX crash is caused by a bug in the Qt window toolkit. It …
1:17 PM Ticket #20163 (Crash in swap_buffers exposing status line during Mac wakeup, macOS 26) closed by Tom Goddard
duplicate: This crash is caused by a bug in the Qt window toolkit. It appears to …
9:57 AM Ticket #1633 (Depict thermal ellipsoids) closed by Eric Pettersen
fixed: The ability to depict thermal ellipsoids is in the current production …
9:47 AM Ticket #20168 (Ability to split structure into residues) created by michael.moos@…
So that per-residue values (e.g. ring fill color) can be applied in a …
8:56 AM Ticket #20167 (mutationscores heatmap: UFuncOutputCastingError) created by willow.coyote-maestas@…
[…]
8:51 AM Ticket #20164 (Crash in QWindowContainer::parentWasChanged) closed by Eric Pettersen
duplicate
7:58 AM Ticket #20166 (Ubuntu: Can't install ISOLDE: "not compatible: wrong platform") created by jianghai.zhu@…
[…] Screenshot from 2026-04-14 10-53-36.png
7:29 AM Ticket #20165 (Crash on Mac waking from sleep) created by a.fasemire@…
[…]

Apr 13, 2026:

7:50 PM Ticket #20164 (Crash in QWindowContainer::parentWasChanged) created by chimerax-bug-report@…
[…]
6:46 PM Ticket #20163 (Crash in swap_buffers exposing status line during Mac wakeup, macOS 26) created by jing.16.liu@…
[…]
5:50 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
5:50 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
5:49 PM Features edited by Eric Pettersen
(diff)
5:10 PM Dev2026-03-13 edited by Tom Goddard
(diff)
5:03 PM Ticket #20162 (openfold predict: No such option: --seed) closed by Tom Goddard
fixed: Fixed in April 13, ChimeraX. Also need to delete ~/openfold and …
4:57 PM Ticket #20162 (openfold predict: No such option: --seed) created by goddard@…
[…]
4:12 PM Dev2026-03-13 edited by Tom Goddard
(diff)
3:32 PM Dev2026-03-13 edited by Tom Goddard
(diff)
2:59 PM Dev2026-03-13 edited by Tom Goddard
(diff)
12:38 PM Ticket #20160 ("Move labels" mouse mode moves hidden labels) closed by Tom Goddard
fixed: Fixed. Thanks for catching this. The move label mouse mode code was …
12:21 PM Ticket #20161 (Crash moving window between screens) closed by Tom Goddard
duplicate: Probable crash dragging tool window in Qt 6.9. Appears fixed in Qt 6.10.
12:11 PM Ticket #20155 (Crash moving window between screens) closed by Tom Goddard
duplicate: This seems to be fixed in ChimeraX 1.11 by a Qt window toolkit update. …
10:50 AM Ticket #20159 (Crash processing mouse event) closed by Eric Pettersen
can't reproduce
10:42 AM Ticket #20157 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
7:32 AM Ticket #20161 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
2:33 AM Ticket #20160 ("Move labels" mouse mode moves hidden labels) created by Tristan Croll
[…]

Apr 12, 2026:

3:11 PM Ticket #20159 (Crash processing mouse event) created by chimerax-bug-report@…
[…]
9:58 AM Ticket #20158 (Bad model table in Boltzgen mmCIF file) created by chimerax-bug-report@…
[…]

Apr 11, 2026:

1:02 AM Ticket #20157 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]

Apr 10, 2026:

6:47 PM Ticket #20156 (Crash starting ChimeraX during login(?)) created by hyoka2829@…
[…]
12:07 PM Ticket #20155 (Crash moving window between screens) created by psrini87@…
[…]
9:53 AM Ticket #20154 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: Qt 6.9 crash dragging tool window. Seems fixed in Qt 6.10.
9:49 AM Ticket #20152 (Boltz → RunPod) closed by Tom Goddard
duplicate
9:47 AM Ticket #20151 (Boltz → RunPod) closed by Tom Goddard
not a bug: The Boltz server option was added after the ChimeraX 1.11.1 release so …
9:11 AM Ticket #20153 (Crash during drag and drop) closed by Eric Pettersen
can't reproduce
2:53 AM Ticket #20154 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]
12:58 AM Ticket #20153 (Crash during drag and drop) created by chimerax-bug-report@…
[…]

Apr 9, 2026:

7:02 PM Ticket #20152 (Boltz → RunPod) created by ucsfamithranga@…
[…]
7:00 PM Ticket #20151 (Boltz → RunPod) created by arangarajan@…
[…]
5:00 PM Ticket #20149 (Crash in swap_buffers exposing status line during Mac wakeup, macOS 26) closed by Tom Goddard
duplicate: Qt 6.9 bug, believe fixed in Qt 6.10.
3:53 PM Ticket #20148 (Restore new session in old ChimeraX) closed by Eric Pettersen
limitation: Hi Johann, Thanks for reporting this problem. A session can be …
2:45 PM 2026-4-9 edited by Tom Goddard
(diff)
2:36 PM Ticket #20150 (SEQCROW: Build QM Input: stateChanged() only accepts 0 argument(s), 1 given) created by chimerax-bug-report@…
[…]
2:36 PM DeveloperMeetings edited by Tom Goddard
(diff)
2:35 PM Ticket #20146 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: Still appears this is fixed in Qt 6.10 and is related to Qt …
2:07 PM Ticket #20145 (ImportError: DLL load failed while importing _pyKVFinder: The ...) closed by Eric Pettersen
can't reproduce: Works on the lab Windows 11 machine
1:37 PM Ticket #20149 (Crash in swap_buffers exposing status line during Mac wakeup, macOS 26) created by chimerax-bug-report@…
[…]
11:31 AM Ticket #20148 (Restore new session in old ChimeraX) created by gogarten@…
[…] AFPGMA3_2_Insertion_ChimeraXSession.cxs
8:06 AM Ticket #20147 (ArtiaX: Cannot interpret '<StringDtype(na_value=nan)>' as a data type) created by chimerax-bug-report@…
[…]
1:16 AM Ticket #20146 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]

Apr 8, 2026:

8:52 PM Ticket #20145 (ImportError: DLL load failed while importing _pyKVFinder: The ...) created by chimerax-bug-report@…
[…]
10:34 AM Ticket #20144 (glClear: invalid framebuffer operation on statusbar expose) closed by Tom Goddard
duplicate: Qt 6.9 bug producing an OpenGL error in QOpenGLContext.makeCurrent().
10:32 AM Ticket #20143 (Crash drawing status line text) closed by Tom Goddard
can't reproduce: This is an unusual ChimeraX crash that I have not seen before. …

Apr 7, 2026:

11:58 PM Ticket #20144 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]
10:17 PM Ticket #20143 (Crash drawing status line text) created by omar.mena@…
[…]
2:02 PM Ticket #20142 (Make a mutation score heatmap GUI) created by Tom Goddard
None of the current mutation score tools (scatter plot, histogram, …
1:18 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
1:16 PM Ticket #20115 (Render by attribute histogram wrong when configure() called) closed by Eric Pettersen
fixed: Fix: …
10:14 AM Dev2026-03-13 created by Tom Goddard
10:13 AM 2026-4-9 created by Tom Goddard
10:12 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:48 AM Ticket #20141 (UniProt fetch failure) closed by Eric Pettersen
can't reproduce
8:27 AM Ticket #20138 (Binary file opened as PDB) closed by Eric Pettersen
not a bug
7:39 AM Ticket #20141 (UniProt fetch failure) created by vijayapillaik@…
[…] 3pjc achain.pdb
4:44 AM Ticket #20140 (H-Bonds: no bisectors) created by jan.petrovsky@…
[…]

Apr 6, 2026:

7:16 PM Ticket #20139 (Open DICOM: cannot access local variable 'dirs' where it is not ...) created by chimerax-bug-report@…
[…]
6:16 PM Ticket #20138 (Binary file opened as PDB) created by chimerax-bug-report@…
[…]
6:12 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
6:10 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
6:03 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
5:57 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
5:56 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
5:39 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
5:38 PM phenix-4-9-26 created by Eric Pettersen
4:44 PM Features edited by Eric Pettersen
(diff)
4:16 PM Dev2026-03-06 edited by Tom Goddard
(diff)
2:53 PM Ticket #20108 (Cannot dock to top of main window) closed by Eric Pettersen
fixed: As of tomorrow's daily build, the toolbar will be dockable into the …
1:24 PM Ticket #20137 (Crash on Mac waking from sleep) closed by Eric Pettersen
duplicate: Bad duplicate due to my having to re-inject ticket into system after …
1:24 PM Ticket #20135 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX bug report panel said what we know about this crash: …
1:23 PM Ticket #20136 (Crash on Mac waking from sleep) closed by Eric Pettersen
duplicate
1:22 PM Ticket #20134 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX bug report panel said what we know about this crash: …
1:20 PM Ticket #20133 (Remote display: Attempt to retrieve context when no valid context on Linux) closed by Tom Goddard
can't reproduce
1:17 PM Ticket #20137 (Crash on Mac waking from sleep) created by bhogeba@…
[…]
1:17 PM Ticket #20136 (Crash on Mac waking from sleep) created by taic@…
[…]
1:13 PM Ticket #20120 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: Mac Qt 6.9 bug, dragging tool window crash.
1:06 PM Ticket #20122 (Open binary file as PDB) closed by Eric Pettersen
not a bug
11:27 AM Ticket #20135 (Crash on Mac waking from sleep) created by taic@…
[…]
11:27 AM Ticket #20134 (Crash on Mac waking from sleep) created by bhogeba@…
[…]
11:27 AM Ticket #20133 (Remote display: Attempt to retrieve context when no valid context on Linux) created by chimerax-bug-report@…
[…]

Apr 5, 2026:

10:39 AM Ticket #20122 (Open binary file as PDB) created by chimerax-bug-report@…
[…]
Note: See TracTimeline for information about the timeline view.