SEQCROW: Build QM Input: stateChanged() only accepts 0 argument(s), 1 given

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.12.dev202603022002 (2026-03-02 20:02:06 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.12.dev202603022002 (2026-03-02)  
© 2016-2026 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> toolshed show

> open "C:/Users/K-PICHI/Desktop/BUAP/Sexto
> semestre/Bioinformática/eros_bioinformatica/practica_5/menthol/Analisis_C10H20O_3D.sdf"

> toolshed show

Installed SEQCROW (1.9.7)  

> ui tool show "Build QM Input"

Traceback (most recent call last):  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 2161, in setStructure  
checked = previous_eles[ele]  
~~~~~~~~~~~~~^^^^^  
KeyError: 'H'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 571, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1459, in start_tool  
return cls._get_func(api, "start_tool")(session, bi, ti)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\\__init__.py", line 475, in start_tool  
tool = BuildQM(session, ti.name)  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 181, in __init__  
self.change_model(ndx)  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 1073, in change_model  
self.job_widget.setStructure(model)  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 2168, in setStructure  
ele_button.setState(ElementButton.Checked)  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\widgets\periodic_table.py", line 85, in setState  
self._changeState(state=state)  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\widgets\periodic_table.py", line 74, in _changeState  
self.stateChanged.emit(self.state)  
TypeError: stateChanged() only accepts 0 argument(s), 1 given!  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 1955, in <lambda>  
run(ses, "ui tool show %s" % StringArg.unparse(tool_name)))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3237, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\cmd.py", line 219, in ui_tool_show  
return bi.start_tool(session, name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 578, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Build QM
Input in bundle SEQCROW:  
stateChanged() only accepts 0 argument(s), 1 given!  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Build QM
Input in bundle SEQCROW:  
stateChanged() only accepts 0 argument(s), 1 given!  
  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 578, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 919, in update_preview  
self.check_elements()  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 1095, in check_elements  
self.basis_widget.setElements(elements)  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 4564, in setElements  
basis.setSelectedElements(  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 3945, in setSelectedElements  
button.setState(ElementButton.Unchecked)  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\widgets\periodic_table.py", line 85, in setState  
self._changeState(state=state)  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\widgets\periodic_table.py", line 74, in _changeState  
self.stateChanged.emit(self.state)  
TypeError: stateChanged() only accepts 0 argument(s), 1 given!  
  
TypeError: stateChanged() only accepts 0 argument(s), 1 given!  
  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\widgets\periodic_table.py", line 74, in _changeState  
self.stateChanged.emit(self.state)  
  
See log for complete Python traceback.  
  
job started: local sqm job "menthol"  
job finished: local sqm job "menthol"  

> open "C:\Users\K-PICHI\SEQCROW_SCRATCH\menthol Thu Apr 9 15.33.04
> 2026\menthol.sqmout" format sqmout

Opened menthol.sqmout as an sqm output file  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2592, in <lambda>  
dw.closeEvent = lambda e, *, tw=tool_window, mw=mw: mw.close_request(tw, e)  
^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 915, in close_request  
tool_instance.delete()  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 1333, in delete  
global_triggers.remove_handler(self._changes)  
^^^^^^^^^^^^^  
AttributeError: 'BuildQM' object has no attribute '_changes'  
  
AttributeError: 'BuildQM' object has no attribute '_changes'  
  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 1333, in delete  
global_triggers.remove_handler(self._changes)  
^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 887, in changeEvent  
self.hide_floating_tools = self.isMinimized()  
^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 986, in hide_floating_tools  
if not tw.floating:  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2303, in _get_floating  
return self.__toolkit.dock_widget.isFloating()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2303, in _get_floating  
return self.__toolkit.dock_widget.isFloating()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 887, in changeEvent  
self.hide_floating_tools = self.isMinimized()  
^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 986, in hide_floating_tools  
if not tw.floating:  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2303, in _get_floating  
return self.__toolkit.dock_widget.isFloating()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2303, in _get_floating  
return self.__toolkit.dock_widget.isFloating()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 887, in changeEvent  
self.hide_floating_tools = self.isMinimized()  
^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 986, in hide_floating_tools  
if not tw.floating:  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2303, in _get_floating  
return self.__toolkit.dock_widget.isFloating()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2303, in _get_floating  
return self.__toolkit.dock_widget.isFloating()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 887, in changeEvent  
self.hide_floating_tools = self.isMinimized()  
^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 986, in hide_floating_tools  
if not tw.floating:  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2303, in _get_floating  
return self.__toolkit.dock_widget.isFloating()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2303, in _get_floating  
return self.__toolkit.dock_widget.isFloating()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 887, in changeEvent  
self.hide_floating_tools = self.isMinimized()  
^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 986, in hide_floating_tools  
if not tw.floating:  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2303, in _get_floating  
return self.__toolkit.dock_widget.isFloating()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2303, in _get_floating  
return self.__toolkit.dock_widget.isFloating()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 887, in changeEvent  
self.hide_floating_tools = self.isMinimized()  
^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 986, in hide_floating_tools  
if not tw.floating:  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2303, in _get_floating  
return self.__toolkit.dock_widget.isFloating()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2303, in _get_floating  
return self.__toolkit.dock_widget.isFloating()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 1990, in _update_running_tools  
tool_action.setToolTip("%s %s tool" % (("Hide" if tw.shown else "Show"),
tw.title))  
^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2411, in shown  
return self.__toolkit.shown  
^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2812, in shown  
return not self.dock_widget.isHidden()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2812, in shown  
return not self.dock_widget.isHidden()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> close

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\widgets\comboboxes.py", line 91, in _del_models  
ndx = self.findData(mdl)  
^^^^^^^^^^^^^^^^^^  
RuntimeError: Internal C++ object (ModelComboBox) already deleted.  
  
Error processing trigger "remove models":  
RuntimeError: Internal C++ object (ModelComboBox) already deleted.  
  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\widgets\comboboxes.py", line 91, in _del_models  
ndx = self.findData(mdl)  
^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> open "C:/Users/K-PICHI/Desktop/BUAP/Sexto
> semestre/Bioinformática/eros_bioinformatica/practica_5/camphor/Analisis_C10H16O_3D.sdf"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\widgets\comboboxes.py", line 87, in _add_models  
self.addItem("%s (%s)" % (mdl.name, mdl.atomspec), mdl)  
RuntimeError: Internal C++ object (ModelComboBox) already deleted.  
  
Error processing trigger "add models":  
RuntimeError: Internal C++ object (ModelComboBox) already deleted.  
  
File "C:\Users\K-PICHI\AppData\Local\UCSF\ChimeraX\1.12\Python311\site-
packages\SEQCROW\widgets\comboboxes.py", line 87, in _add_models  
self.addItem("%s (%s)" % (mdl.name, mdl.atomspec), mdl)  
  
See log for complete Python traceback.  
  

> style stick

Changed 27 atom styles  

> select add #1

27 atoms, 28 bonds, 1 residue, 1 model selected  

> style sel stick

Changed 27 atom styles  

> style sel sphere

Changed 27 atom styles  

> style sel ball

Changed 27 atom styles  

> style sel stick

Changed 27 atom styles  

> style sel ball

Changed 27 atom styles  

> select subtract #1

Nothing selected  

> select add #1

27 atoms, 28 bonds, 1 residue, 1 model selected  

> select subtract #1

Nothing selected  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 1990, in _update_running_tools  
tool_action.setToolTip("%s %s tool" % (("Hide" if tw.shown else "Show"),
tw.title))  
^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2411, in shown  
return self.__toolkit.shown  
^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2812, in shown  
return not self.dock_widget.isHidden()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
RuntimeError: Internal C++ object (PySide6.QtWidgets.QDockWidget) already
deleted.  
  
File "C:\Program Files\ChimeraX 1.12.dev202603022002\bin\Lib\site-
packages\chimerax\ui\gui.py", line 2812, in shown  
return not self.dock_widget.isHidden()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 576.52
OpenGL renderer: NVIDIA GeForce GTX 1050 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.9
Locale: es_MX.cp1252
Qt version: PySide6 6.10.1, Qt 6.10.1
Qt runtime version: 6.10.1
Qt platform: windows

Manufacturer: To Be Filled By O.E.M.
Model: B450M Steel Legend
OS: Microsoft Windows 10 Pro (Build 19045)
Memory: 17,101,144,064
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 5700X 8-Core Processor             
OSLanguage: es-MX

Installed Packages:
    accessible-pygments: 0.0.5
    aiohappyeyeballs: 2.6.1
    aiohttp: 3.13.1
    aiosignal: 1.4.0
    alabaster: 1.0.0
    annotated-types: 0.7.0
    anyio: 4.12.1
    appdirs: 1.4.4
    asttokens: 3.0.1
    attrs: 25.4.0
    babel: 2.18.0
    beautifulsoup4: 4.13.5
    blockdiag: 3.0.0
    blosc2: 4.1.1
    build: 1.3.0
    certifi: 2026.2.25
    cftime: 1.6.5
    charset-normalizer: 3.4.4
    ChimeraX-AddCharge: 1.5.20
    ChimeraX-AddH: 2.2.8
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.2
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 3.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Animations: 1.0
    ChimeraX-Aniso: 1.3.2
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.64.1
    ChimeraX-AtomicLibrary: 14.2.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.1
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.6.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4.1
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3.1
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.12.dev202603022002
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.3
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.4
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.8.2
    ChimeraX-Label: 1.3
    ChimeraX-LightingGUI: 1.0
    ChimeraX-ListInfo: 1.3.1
    ChimeraX-Log: 1.2.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.2
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MCPServer: 0.2.0
    ChimeraX-MDcrds: 2.18
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-Minimize: 1.3.5
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.23
    ChimeraX-ModelPanel: 1.6.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0.1
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.15.4
    ChimeraX-OpenFold: 1.0
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.12
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.5
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.4
    ChimeraX-ProfileGrids: 1.5.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.8
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.3
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.2
    ChimeraX-Scenes: 0.3.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.12
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.5
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SNFG: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.50.3
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDock: 1.6.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    click: 8.3.1
    colorama: 0.4.6
    comm: 0.2.3
    comtypes: 1.4.11
    contourpy: 1.3.3
    coverage: 7.13.4
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.2.4
    debugpy: 1.8.20
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.1
    filelock: 3.19.1
    fonttools: 4.61.1
    frozenlist: 1.8.0
    funcparserlib: 2.0.0a0
    glfw: 2.10.0
    grako: 3.16.5
    h11: 0.16.0
    h5py: 3.15.1
    html2text: 2025.4.15
    httpcore: 1.0.9
    httpx: 0.28.1
    httpx-sse: 0.4.3
    idna: 3.11
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.3.0
    ipykernel: 7.1.0
    ipython: 9.9.0
    ipython_pygments_lexers: 1.1.1
    ipywidgets: 8.1.8
    jedi: 0.19.2
    Jinja2: 3.1.6
    jsonschema: 4.26.0
    jsonschema-specifications: 2025.9.1
    jupyter_client: 8.8.0
    jupyter_core: 5.9.1
    jupyterlab_widgets: 3.0.16
    kiwisolver: 1.4.9
    line_profiler: 5.0.0
    lxml: 6.0.2
    lz4: 4.3.2
    Markdown: 3.8.2
    MarkupSafe: 3.0.3
    matplotlib: 3.10.7
    matplotlib-inline: 0.2.1
    mcp: 1.18.0
    msgpack: 1.1.1
    multidict: 6.7.1
    ndindex: 1.10.1
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.14.1
    numpy: 1.26.4
    nvidia-nvjitlink-cu12: 12.9.86
    OpenMM: 8.4.0
    OpenMM-CUDA-12: 8.4.0
    openvr: 1.26.701
    packaging: 25.0
    ParmEd: 4.2.2
    parso: 0.8.6
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 11.3.0
    pip: 25.2
    pkginfo: 1.12.1.2
    platformdirs: 4.9.2
    pluggy: 1.6.0
    prompt_toolkit: 3.0.52
    propcache: 0.4.1
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pybind11: 3.0.1
    pycollada: 0.8
    pydantic: 2.12.5
    pydantic-settings: 2.13.1
    pydantic_core: 2.41.5
    pydata-sphinx-theme: 0.16.1
    pydicom: 2.4.4
    Pygments: 2.18.0
    pynmrstar: 3.5.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.10
    PyOpenGL-accelerate: 3.1.10
    pyopenxr: 1.1.4501
    pyparsing: 3.3.2
    pyproject_hooks: 1.2.0
    PySide6: 6.10.1
    PySide6_Addons: 6.10.1
    PySide6_Essentials: 6.10.1
    pytest: 9.0.2
    pytest-cov: 7.0.0
    python-dateutil: 2.9.0.post0
    python-dotenv: 1.2.2
    python-multipart: 0.0.22
    pywin32: 311
    pyzmq: 27.1.0
    qtconsole: 5.7.0
    QtPy: 2.4.3
    qtshim: 1.2.1
    RandomWords: 0.4.0
    referencing: 0.37.0
    requests: 2.32.5
    roman-numerals: 4.1.0
    rpds-py: 0.30.0
    scipy: 1.14.0
    Send2Trash: 2.1.0
    SEQCROW: 1.9.7
    setuptools: 80.9.0
    sfftk-rw: 0.8.1
    shiboken6: 6.10.1
    six: 1.17.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.8.3
    Sphinx: 9.0.4
    sphinx-autodoc-typehints: 3.6.1
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    sse-starlette: 3.3.2
    stack-data: 0.6.3
    starlette: 0.52.1
    superqt: 0.7.6
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.5
    tornado: 6.5.4
    traitlets: 5.14.3
    typing-inspection: 0.4.2
    typing_extensions: 4.15.0
    tzdata: 2025.3
    urllib3: 2.6.3
    uvicorn: 0.41.0
    wcwidth: 0.6.0
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.15
    WMI: 1.5.1
    yarl: 1.23.0

[Eric Pettersen]

The follow-on PySide errors are probably due to Build QM Input failing during initialization.