Timeline



Oct 30, 2015:

5:13 PM Ticket #175 (2x slower opening 3j3q) created by Tom Goddard
Timing opening 3j3q.cif (2.4 million atoms) until it is displayed now …
4:55 PM Ticket #174 (Chimera starts with no tools) created by Tom Goddard
About half the time Chimera starts with just a black graphics area and …

Oct 29, 2015:

3:34 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:34 PM 2015-10-29 created by Conrad Huang
11:39 AM Ticket #173 (command case comparison needs to be more sophisticated) created by pett
Downcasing what the user types for keyword matching is problematic in …
11:21 AM Ticket #171 (built-in alias delayed registration failed) closed by Greg Couch
fixed: Not sure when this was fixed, probably when internal alias function …

Oct 28, 2015:

9:28 PM Ticket #136 (Deleting atoms does not update ribbon) closed by Conrad Huang
fixed: Fixed by [develop ab70efd]. Set the "ribbon changed" state for …
4:10 PM Ticket #172 (specifying surface model wrongly specifies its enclosed atoms) created by Elaine Meng
When I have atomic model #1 and its surfaces for chains A-D are models …

Oct 27, 2015:

3:51 PM Ticket #118 (Render images in nogui mode) closed by Tom Goddard
fixed: Working on Linux using OSMesa (off-screen mesa) with LLVM driver.
3:50 PM Ticket #158 ("list" command broken, gives traceback) closed by Tom Goddard
fixed: Fixed some weeks ago.
10:35 AM Ticket #171 (built-in alias delayed registration failed) created by Elaine Meng
In today's daily build, trying to use "ribbon" or "ts" (or using …

Oct 26, 2015:

6:39 PM EarlyReleaseRequirements edited by Tom Goddard
(diff)
2:37 PM Ticket #103 (Atomspec specifying one model in hierarchy) closed by Conrad Huang
fixed: Code was too smart for itself. If there are no submodels, the code …

Oct 23, 2015:

10:53 AM Ticket #170 (PyOpenGL exception when exiting in nogui mode) closed by Tom Goddard
fixed: Fixed. Code was trying to delete the default framebuffer (0) when exiting.
10:51 AM Needed Command Functionality edited by Elaine Meng
(diff)
10:46 AM Needed Command Functionality edited by Elaine Meng
(diff)

Oct 22, 2015:

5:42 PM Ticket #168 (poor detection of lowest unused model ID number) closed by Tom Goddard
fixed: Fixed. Assigned lowest unused model id (or submodel id) to new models.
5:30 PM Ticket #170 (PyOpenGL exception when exiting in nogui mode) created by Greg Couch
[…]
3:27 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:27 PM 2015-10-22 created by Conrad Huang
1:56 PM Ticket #169 (deleting chain doesn't delete its cartoon) closed by Conrad Huang
fixed: Fixed in [ab70efd]. When a residue (in a chain) is deleted, mark the …
11:34 AM Ticket #169 (deleting chain doesn't delete its cartoon) created by Elaine Meng
For example: open 1zik cartoon delete /b ... although you can make …
11:06 AM Ticket #168 (poor detection of lowest unused model ID number) created by Elaine Meng
If you close everything, model ID numbers start over at 1, but …

Oct 21, 2015:

5:58 PM Ticket #167 (volume color option rgba(r,g,b,a) does not work) created by Tom Goddard
The volume color option gives volume #1 color rgba(.5,0,0,.5) > …

Oct 20, 2015:

1:08 PM Ticket #165 (depending on order of commands, ribbon hides ALL peptide atoms) closed by Conrad Huang
fixed: Fixed in [b50d1ad]. Atom hide bits were being updated even for …
11:54 AM Ticket #166 (Side view display for orthographic camera) created by Tom Goddard
I added an orthographic projection camera ("camera ortho") and the …
11:46 AM Ticket #164 (misdirected or broken pick-select when I've translated the model ...) closed by Tom Goddard
fixed: Fixed. Picking code for molecules was ignoring the motion. So it …
11:20 AM Ticket #163 (trouble making second molmap) closed by Tom Goddard
fixed: Fixed. Was caused by comparing two arrays of unequal length. This …
11:15 AM Ticket #165 (depending on order of commands, ribbon hides ALL peptide atoms) created by Elaine Meng
open 1gcn cartoon ~disp ~cartoon cartoon disp ... now NO atoms are …
10:44 AM Ticket #164 (misdirected or broken pick-select when I've translated the model ...) created by Elaine Meng
I opened 1gcn twice and then translated only one copy (by selecting …
10:34 AM Ticket #163 (trouble making second molmap) created by Elaine Meng
I get a traceback with molmap but it depends on context whether a …

Oct 19, 2015:

4:54 PM Ticket #162 (Command history dialog always shown on startup) closed by pett
fixed: Fixed.
11:56 AM EarlyReleaseRequirements edited by Tom Goddard
(diff)
11:53 AM EarlyReleaseRequirements edited by Tom Goddard
(diff)
11:52 AM EarlyReleaseRequirements edited by Tom Goddard
(diff)
11:46 AM Ticket #162 (Command history dialog always shown on startup) created by Tom Goddard
The command history dialog is always shown on startup under the main …

Oct 16, 2015:

6:14 PM Ticket #161 (Ribbon normals are weird, 1a0m chain B) created by Tom Goddard
Ribbon normals are weird in the helix in chain B of 1a0m, with a …

Oct 15, 2015:

3:15 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:15 PM 2015-10-15 created by Conrad Huang

Oct 14, 2015:

10:50 PM Ticket #160 (echo doesn't echo everything) closed by Greg Couch
fixed: Fixed in 17b25bc5438c938091622d6ee8c3d06f15d62abe. echo may still …
6:18 PM EarlyReleaseRequirements edited by Tom Goddard
(diff)
6:12 PM EarlyReleaseRequirements edited by Tom Goddard
(diff)
6:11 PM EarlyReleaseRequirements edited by Tom Goddard
(diff)
3:46 PM Ticket #159 (more sophisticated history filtering) closed by pett
fixed: Implemented.
3:20 PM Ticket #160 (echo doesn't echo everything) created by pett
The echo command mostly works, but if you type "echo ---" you get a …
10:28 AM Ticket #156 (cannot display CA-only with ribbon) closed by Conrad Huang
fixed: Atom visibility update code only took into account ribbon …
10:12 AM Ticket #155 (~cartoon doesn't always unhide backbone) closed by Conrad Huang
fixed: Atom visibility was not updated when the ribbon is undisplayed for all …

Oct 13, 2015:

5:02 PM Ticket #159 (more sophisticated history filtering) created by olibclarke@…
I have one suggestion for a slight tweak… at the moment, scrolling up …

Oct 12, 2015:

5:52 PM Ticket #88 (Pseudobonds are not deleted when atoms are deleted) closed by pett
fixed
5:50 PM Ticket #97 (Make one pseudobond manager per session) closed by pett
fixed
5:49 PM Ticket #89 (Atom deletion is very slow) closed by pett
fixed
11:49 AM Session2 edited by Greg Couch
(diff)

Oct 9, 2015:

2:45 PM Ticket #158 ("list" command broken, gives traceback) created by Elaine Meng
it was working in recent builds, but in the current daily build, …

Oct 8, 2015:

3:31 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:30 PM 2015-10-8 created by Conrad Huang

Oct 7, 2015:

1:20 PM Ticket #157 (Mac chimera app uses build libatomstruct.dylib instead of installed version) created by Tom Goddard
The Mac Chimera app is using build versions of the shared libraries …
11:50 AM Ticket #156 (cannot display CA-only with ribbon) created by Elaine Meng
There are situations in which one wants to show specific residues as …

Oct 6, 2015:

2:37 PM Ticket #155 (~cartoon doesn't always unhide backbone) created by pett
~cartoon in 1hvb doesn't unhide the carbon alphas. 1hvb is unusual in …
1:45 PM Ticket #154 ("color byhet" traceback) closed by Conrad Huang
fixed: Fixed by filtering carbons from selected atoms before assigning colors.
9:38 AM Needed Command Functionality edited by Elaine Meng
(diff)

Oct 5, 2015:

3:33 PM Ticket #153 ("movie record" traceback) closed by Tom Goddard
fixed: Fixed. Eric replaced callbacks for rendered images by triggers, but …
11:27 AM Ticket #154 ("color byhet" traceback) created by Elaine Meng
In the current daily build, command "color byelement" works but "color …
11:17 AM Ticket #153 ("movie record" traceback) created by Elaine Meng
in the current daily build, command "movie record" gives this …

Oct 1, 2015:

3:29 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:28 PM 2015-10-1 created by Conrad Huang
2:02 PM Session2 edited by Greg Couch
(diff)
9:06 AM Session2 edited by Greg Couch
(diff)
9:02 AM Session2 edited by Greg Couch
(diff)
12:49 AM Session2 edited by Greg Couch
(diff)
12:21 AM Session2 edited by Greg Couch
(diff)

Sep 30, 2015:

10:39 PM Session2 edited by Greg Couch
(diff)
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