Timeline



Jul 3, 2018:

5:06 PM ChangeLog edited by Elaine Meng
(diff)
5:06 PM ChangeLog edited by Elaine Meng
(diff)
5:05 PM ChangeLog edited by Elaine Meng
(diff)

Jul 2, 2018:

2:34 AM Ticket #1177 (Can't click buttons on license page in Windows 10 Edge browser) created by Tristan Croll
(Not sure who's best to report this to, so sending to Tom) …

Jun 28, 2018:

2:43 PM 2018-06-28 created by Conrad Huang
2:06 PM DeveloperMeetings edited by Conrad Huang
(diff)

Jun 27, 2018:

2:26 PM ChangeLog edited by Elaine Meng
(diff)
2:25 PM ChangeLog edited by Elaine Meng
(diff)
1:37 PM Ticket #1176 (ChimeraX not opening) created by coleman.martin@…
[…]
3:07 AM Ticket #1175 (Add define and undefine CModule/CLibrary entries) created by Tristan Croll
ISOLDE is getting rather large now, and the C++ portion is divided …

Jun 26, 2018:

4:06 PM Ticket #1174 (Bogus missing-structure pseudobonds in 2duf) created by pett
In 2duf (mmCIF), there are covent bonds connecting residues 64 and 66 …

Jun 25, 2018:

5:34 PM Ticket #1173 (Ribbon normalization error) created by pett
The ribbon code prints out a "normalization error" when "debug test" …
10:40 AM Ticket #676 (1gmk cartoon strand twist) closed by Elaine Meng
fixed
7:11 AM Ticket #1172 (Problems encountered building bundle for Windows) created by Tristan Croll
A somewhat catch-all list of issues encountered while building the …

Jun 22, 2018:

3:51 PM Ticket #476 (Command history dialog appears at startup) closed by pett
fixed: Fixed by commit 7335861ebf893e47a43d3b8bf7e96f3c22be7e53 in March of 2017
10:28 AM Ticket #1167 (Re:) closed by pett
invalid
10:26 AM Ticket #1171 ("ChimeraX --cmd" doesn't recognise multi-word commands) closed by pett
worksforme: Hi Tristan, You have to put quotes around a multi-word command. --Eric
2:49 AM Ticket #1171 ("ChimeraX --cmd" doesn't recognise multi-word commands) created by Tristan Croll
Enough said, really. As far as I can tell from trying every …

Jun 21, 2018:

4:07 PM 2018-06-14 edited by pett
(diff)
6:15 AM Ticket #1169 ('new frame' trigger should still fire when no models open) created by Tristan Croll
At the moment, unless I'm missing something there is no session …

Jun 14, 2018:

3:12 PM Ticket #1168 ("safe mode" startup for use with devel command) created by pett
It would be useful to have a "safe mode" startup flag for Chimerax …
2:44 PM 2018-06-14 created by Conrad Huang
2:30 PM Ticket #620 (Create initial bundle development example with documentation) closed by Conrad Huang
fixed: More editing will help.
2:07 PM DeveloperMeetings edited by Conrad Huang
(diff)
10:35 AM Ticket #1129 (ffmpeg on OSX 10.11: dyld: Symbol not found: _clock_gettime) closed by Conrad Huang
duplicate: Same as #983.
10:35 AM Ticket #983 (ffmpeg on OSX 10.11: dyld: Symbol not found: _clock_gettime) closed by Conrad Huang
wontfix: Fixing this requires some effort because we would have to work around …

Jun 12, 2018:

5:08 PM Ticket #662 (ribbon "normalization error") closed by Conrad Huang
fixed: Fixed in 6968fa470. Was using a vector on the assumption …
11:00 AM Ticket #1167 (Re:) created by Conrad Huang
[…]
7:59 AM Ticket #1166 (Ribbon: operands could not be broadcast together with shapes) created by turmand@…
[…] smime.p7s​
4:10 AM Ticket #1165 (Ramachandran plot in ISOLDE (libbz2.so.1.0 not found)) created by luigi@…
[…]

Jun 11, 2018:

2:13 PM Ticket #1162 (Execution of 'Structure' object's '_graphics_changed' property raised ...) closed by Greg Couch
fixed: Doesn't happen in nogui mode. Fixed by added 'if not mol.deleted:'

Jun 8, 2018:

12:23 PM Ticket #1161 (undo traceback) closed by Conrad Huang
fixed: Fixed in 81635c182. UserError exception is thrown now, …

Jun 7, 2018:

4:56 PM Ticket #1160 (Issue with morphing) closed by pett
fixed: "position changed" was being change-tracked on an unopened model (i.e. …
3:21 PM 2018-06-07 created by Conrad Huang
2:10 PM DeveloperMeetings edited by Conrad Huang
(diff)
1:25 PM Ticket #1164 (port filled rings from Chimera) created by Greg Couch
Filled sugar and bases rings has been requested as the default for all …
8:54 AM Ticket #1163 (Sample Error Tool) created by msaqib_2020@…
[…] [[Image(...)]] …

Jun 6, 2018:

5:07 PM Ticket #1123 (PDB output not updating HELIX/SHEET) closed by pett
fixed: Fix will be in the next build
3:58 PM Ticket #1162 (Execution of 'Structure' object's '_graphics_changed' property raised ...) created by Tom Goddard
The following command (must be on one line) causes nucleotides to call …
2:37 PM Ticket #1161 (undo traceback) created by Greg Couch
Reproduce with: […] The traceback is: […] Discussion: Putting …
2:24 PM Ticket #949 (Tool window dragging problematic on Linux) closed by Greg Couch
nonchimerax: Appears to be fixed with Qt 5.9.5.
12:22 PM Ticket #1155 (RFE: rounded ends on nucleotide stubs) closed by Greg Couch
fixed: Fixed!

Jun 5, 2018:

10:03 PM Ticket #1154 (cannot use "open" command with URL) closed by Greg Couch
fixed
5:29 PM Ticket #1159 (Issue with morphing) closed by pett
duplicate: duplicate of #1160
5:29 PM Ticket #1158 (Issue with morphing) closed by pett
duplicate: duplicate of #1160
5:05 PM Ticket #1160 (Issue with morphing) created by coleman.martin@…
[…]
5:04 PM Ticket #1159 (Issue with morphing) created by coleman.martin@…
[…]
5:04 PM Ticket #1158 (Issue with morphing) created by coleman.martin@…
[…]
4:00 PM Ticket #1157 (need to change initial display of nucleotides) created by Elaine Meng
The current initial display of nucleotides has the same issues I …
3:53 PM Ticket #1156 (RFE nucleotide color follows residue (cartoon) color instead of atom color) created by Elaine Meng
This is already true for ladder and stub nucleotide representations. …
3:48 PM Ticket #1155 (RFE: rounded ends on nucleotide stubs) created by Elaine Meng
Nucleotide stubs would look nicer with rounded ends.
3:07 PM Ticket #1103 (AddH fails after deleting atoms) closed by pett
fixed: It looks like what you are importing from molobject is all the …
11:58 AM Ticket #1153 (surface_zone() before first drawing has no effect) closed by Tom Goddard
fixed: Fixed. Surface zone initially done on an empty surface was not doing …
11:55 AM Ticket #1154 (cannot use "open" command with URL) created by Elaine Meng
For example open ​http://www.rbvi.ucsf.edu/chimera/index.html …
8:47 AM Ticket #1103 (AddH fails after deleting atoms) reopened by Tristan Croll
This is still happening in the current 0.7 build. If I load a model …
8:16 AM Ticket #696 (File/save causing segmentation fault in Linux) closed by Tristan Croll
fixed: Just checked in the latest 0.7 build. No more crash.
8:15 AM Ticket #925 (Severe degradation in threaded performance on Linux) closed by Tristan Croll
fixed: This old ticket is well and truly obsolete now.
1:42 AM Ticket #1153 (surface_zone() before first drawing has no effect) created by Tristan Croll
Previously it was possible to mask a volume using surface_zone() …

Jun 4, 2018:

6:46 PM Ticket #1152 (open pdbdev:4 gives error) closed by Tom Goddard
fixed: Fixed. This IHM model had missing model group names. Added code to …
5:00 PM Ticket #1152 (open pdbdev:4 gives error) created by Elaine Meng
UCSF ChimeraX version: 0.7 (2018-06-03) open pdbdev:4 Summary of …
11:14 AM Ticket #1151 (pausing cursor over nucleotide ladder or stubs causes tracebacks) closed by pett
fixed: Fixed. In some case Nucleotides was passing in the residue as the …
10:23 AM Ticket #1151 (pausing cursor over nucleotide ladder or stubs causes tracebacks) created by Elaine Meng
UCSF ChimeraX version: 0.7 (2018-06-03) open 1bna nuc stubs ... move …
10:08 AM 2018-05-31 edited by Conrad Huang
(diff)
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