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Opened 7 years ago
Closed 7 years ago
#1174 closed defect (fixed)
Bogus missing-structure pseudobonds in 2duf
| Reported by: | pett | Owned by: | Greg Couch |
|---|---|---|---|
| Priority: | moderate | Milestone: | 1.0 |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
In 2duf (mmCIF), there are covent bonds connecting residues 64 and 66 (there is no residue 65) and 66 and 68 (no 67), which is fine. But there are also missing-structure pseudobonds between the exact same atoms as the covalent bonds.
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The code was figured out the connecting atoms, but a Bond::polymer_bond_atoms returned false, so it treated it like a gap. Now, it expects for there to be a connecting bond when one of the residues is non-standard.