Opened 7 years ago

Closed 7 years ago

#1160 closed defect (fixed)

Issue with morphing

Reported by: coleman.martin@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Structure Comparison Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

Hello,

I am encountering an issue when trying to make a morph conformation of a matched molecule. The command used was morph #1,2 it starts to interpolate then i get the error below. Originally, I thought this error could be due to molecule 1 and 2 having a different number of chains, so I tried to morph #1.1,2.1 but then I got REQUIRE 2 STRUCTURES. Then I tried to morph #1,2 again with molecules that have the same number of chains yet get the same error.  This happens and the program becomes unresponsive to inputs. Molecules won't rotate, command line lags and the log isn't able to be copied.

TypeError: Cannot instantiate Python class corresponding to C++ class atomstruct::GraphicsChanges

File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\atomic\molobject.py", line 2281, in
args = (ctypes.c_void_p,), ret = ctypes.py_object)(ctypes.c_void_p(int(ptr)))

See log for complete Python traceback.

Thank you for your help,
Cole

Change History (5)

comment:1 by Eric Pettersen, 7 years ago

Cc: Eric Pettersen added
Component: Unassigned → Structure Comparison
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned

comment:2 by Tom Goddard, 7 years ago

Morphs are working for me. Could you attach two PDB files that produce this error? What operating system are you using? And are you using the current ChimeraX daily build?

in reply to:  3 ; comment:3 by coleman.martin@…, 7 years ago 

I am using 4CMP and 4ZT0 that I have split. I am using version 0.6 (2018-04-06) on Windows 10, not a daily build.


open 4CMP fromDatabase pdb; open 4ZT0 fromDatabase pdb; split #1; split #2; close # 1.2; close #2.3; close #2.4


here is a copy of the log before trying morph #1,2:


UCSF ChimeraX version: 0.6 (2018-04-06)
OpenGL version: 3.3.0 NVIDIA 391.01
OpenGL renderer: GeForce GTX 950M/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
How to cite UCSF ChimeraX
open 4CMP fromDatabase pdb
Summary of feedback from opening 4CMP fetched from pdb
notes Used PDBx fixed column width tables to speed up reading mmCIF file
Used PDBx keywords to speed up reading mmCIF file
Chain information for 4cmp #1
Chain Description
A B crispr-associated endonuclease CAS9/CSN1
4cmp mmCIF Assemblies
1 author_and_software_defined_assembly
2 author_and_software_defined_assembly

4cmp citation:
Jinek, M., Jiang, F., Taylor, D.W., Sternberg, S.H., Kaya, E., Ma, E., Anders, C., Hauer, M., Zhou, K., Lin, S., Kaplan, M., Iavarone, A.T., Charpentier, E., Nogales, E., Doudna, J.A. (2014). Structures of Cas9 Endonucleases Reveal RNA-Mediated Conformational Activation. Science, 343, 47997

Opened mmCIF data containing 38285 atoms and 38375 bonds
open 4ZT0 fromDatabase pdb
Summary of feedback from opening 4ZT0 fetched from pdb
notes Used PDBx fixed column width tables to speed up reading mmCIF file
Used PDBx keywords to speed up reading mmCIF file
Chain information for 4zt0 #2
Chain Description
A C CRISPR-associated endonuclease Cas9
B D single-guide RNA
4zt0 mmCIF Assemblies
1 author_and_software_defined_assembly
2 author_and_software_defined_assembly

4zt0 citation:
Jiang, F., Zhou, K., Ma, L., Gressel, S., Doudna, J.A. (2015). A Cas9-guide RNA complex preorganized for target DNA recognition. Science, 348, 1477-1481

Opened mmCIF data containing 23790 atoms and 24530 bonds
split #1
Chain information for 4cmp A #1.1
Chain Description
A No description available
Chain information for 4cmp B #1.2
Chain Description
B No description available
Split 4cmp (#1) into 2 models
split #2
Chain information for 4zt0 A #2.1
Chain Description
A No description available
Chain information for 4zt0 B #2.2
Chain Description
B No description available
Chain information for 4zt0 C #2.3
Chain Description
C No description available
Chain information for 4zt0 D #2.4
Chain Description
D No description available
Split 4zt0 (#2) into 4 models
close # 1.2
close #2.3
close #2.4
morph #1.1,2.1
Require at least 2 structures for morph


Thanks,

Cole

________________________________
From: ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
Sent: Tuesday, June 5, 2018 6:38:11 PM
Cc: Martin, Coleman; goddard@cgl.ucsf.edu; pett@cgl.ucsf.edu
Subject: Re: [ChimeraX] #1160: Issue with morphing

#1160: Issue with morphing
-------------------------------------------+----------------------
          Reporter:  coleman.martin@…      |      Owner:  goddard
              Type:  defect                |     Status:  assigned
          Priority:  normal                |  Milestone:
         Component:  Structure Comparison  |    Version:
        Resolution:                        |   Keywords:
        Blocked By:                        |   Blocking:
Notify when closed:                        |   Platform:  all
           Project:  ChimeraX              |
-------------------------------------------+----------------------

Comment (by goddard):

 Morphs are working for me.  Could you attach two PDB files that produce
 this error?  What operating system are you using?  And are you using the
 current ChimeraX daily build?

--
Ticket URL: <https://plato.cgl.ucsf.edu/trac/ChimeraX/ticket/1160#comment:2>
ChimeraX <http://www.rbvi.ucsf.edu/chimerax/>
ChimeraX Issue Tracker

comment:4 by Tom Goddard, 7 years ago

Cc: Tom Goddard added; Eric Pettersen removed
Owner: changed from Tom Goddard to Eric Pettersen

Running the following commands

open 4CMP
open 4ZT0
split #1
split #2
close # 1.2
close #2.3
close #2.4
morph #1,​2

crashes ChimeraX in my current development build with the following traceback to the shell, indicating crash in StructureData c_ptr_to_py_inst.

$ cx
GVA info: Successfully connected to the Intel plugin, offline Gen7
Fatal Python error: Segmentation fault

Thread 0x0000700009013000 (most recent call first):

File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/threading.py", line 299 in wait
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/threading.py", line 551 in wait
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/threading.py", line 1180 in run
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/threading.py", line 916 in _bootstrap_inner
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/threading.py", line 884 in _bootstrap

Current thread 0x00007fffaa4ca380 (most recent call first):

File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/molobject.py", line 2136 in <lambda>
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/molobject.py", line 72 in _atomic_structure
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/molobject.py", line 1773 in changes
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/changes.py", line 25 in check_for_changes
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/updateloop.py", line 47 in draw_new_frame
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/ui/graphics.py", line 119 in _redraw_timer_callback
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/ui/gui.py", line 224 in event_loop
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/ChimeraX_main.py", line 701 in init
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/ChimeraX_main.py", line 793 in <module>
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/runpy.py", line 85 in _run_code
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/runpy.py", line 193 in _run_module_as_main

Segmentation fault: 11

Crash dump follows:

Process: ChimeraX [56301]
Path: /Users/USER/*/ChimeraX.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.7.0 (0.7.0.0)
Code Type: X86-64 (Native)
Parent Process: bash [54100]
Responsible: ChimeraX [56301]
User ID: 501

Date/Time: 2018-06-06 16:01:47.570 -0700
OS Version: Mac OS X 10.13.4 (17E202)
Report Version: 12
Anonymous UUID: ADCA02F2-9A59-6574-CF8F-380125498A20

Time Awake Since Boot: 700000 seconds

System Integrity Protection: enabled

Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread

Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: EXC_I386_GPFLT
Exception Note: EXC_CORPSE_NOTIFY

Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff72318b6e pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff724e3080 pthread_kill + 333
2 libsystem_c.dylib 0x00007fff722266fe raise + 26
3 libsystem_platform.dylib 0x00007fff724d6f5a _sigtramp + 26
4 ??? 000000000000000000 0 + 0
5 libmolc.dylib 0x0000000110c06884 structure_py_inst + 20
6 _ctypes.cpython-36m-darwin.so 0x000000010feadf5f ffi_call_unix64 + 79
7 _ctypes.cpython-36m-darwin.so 0x000000010feae7ea ffi_call + 890
8 _ctypes.cpython-36m-darwin.so 0x000000010fea994e _ctypes_callproc + 878
9 _ctypes.cpython-36m-darwin.so 0x000000010fea3181 PyCFuncPtr_call + 1217
10 org.python.python 0x000000010e8b4492 _PyObject_FastCallDict + 386
11 org.python.python 0x000000010e990024 call_function + 436
12 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
13 org.python.python 0x000000010e9912dd fast_function + 525
14 org.python.python 0x000000010e99002b call_function + 443
15 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
16 org.python.python 0x000000010e9912dd fast_function + 525
17 org.python.python 0x000000010e99002b call_function + 443
18 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
19 org.python.python 0x000000010e990bab _PyEval_EvalCodeWithName + 2715
20 org.python.python 0x000000010e9872b7 PyEval_EvalCodeEx + 55
21 org.python.python 0x000000010e8df63f function_call + 367
22 org.python.python 0x000000010e8b41c5 PyObject_Call + 101
23 org.python.python 0x000000010e8cfe50 property_descr_get + 160
24 org.python.python 0x000000010e90526b _PyObject_GenericGetAttrWithDict + 171
25 org.python.python 0x000000010e98b52b _PyEval_EvalFrameDefault + 16939
26 org.python.python 0x000000010e9912dd fast_function + 525
27 org.python.python 0x000000010e99002b call_function + 443
28 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
29 org.python.python 0x000000010e9912dd fast_function + 525
30 org.python.python 0x000000010e99002b call_function + 443
31 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
32 org.python.python 0x000000010e9916d3 _PyFunction_FastCallDict + 835
33 org.python.python 0x000000010e8b43cf _PyObject_FastCallDict + 191
34 org.python.python 0x000000010e8b45ac _PyObject_Call_Prepend + 156
35 org.python.python 0x000000010e8b41c5 PyObject_Call + 101
36 QtCore.so 0x00000001126db828 PyQtSlot::call(_object*, _object*) const + 40
37 QtCore.so 0x00000001126db727 PyQtSlot::invoke(void, _object*, void*, bool) const + 391
38 QtCore.so 0x00000001126dc268 PyQtSlotProxy::unislot(void) + 88
39 QtCore.so 0x00000001126dc1da PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void) + 58
40 QtCore 0x0000000112243316 QMetaObject::activate(QObject*, int, int, void) + 2230
41 QtCore 0x000000011224af82 QTimer::timerEvent(QTimerEvent*) + 98
42 QtCore.so 0x00000001125dba68 sipQTimer::timerEvent(QTimerEvent*) + 120
43 QtCore 0x000000011223b5d6 QObject::event(QEvent*) + 102
44 QtCore.so 0x00000001125db8db sipQTimer::event(QEvent*) + 187
45 QtWidgets 0x000000011158fe42 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
46 QtWidgets 0x000000011159115f QApplication::notify(QObject*, QEvent*) + 383
47 QtWidgets.so 0x0000000111161f8a sipQApplication::notify(QObject*, QEvent*) + 234
48 QtCore 0x00000001122129bf QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
49 QtCore 0x0000000112268a5a QTimerInfoList::activateTimers() + 890
50 libqcocoa.dylib 0x000000011b8d7862 0x11b8b1000 + 157794
51 com.apple.CoreFoundation 0x00007fff49e32d81 CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION + 17
52 com.apple.CoreFoundation 0x00007fff49eea65c CFRunLoopDoSource0 + 108
53 com.apple.CoreFoundation 0x00007fff49e15d8c CFRunLoopDoSources0 + 300
54 com.apple.CoreFoundation 0x00007fff49e151ad CFRunLoopRun + 1293
55 com.apple.CoreFoundation 0x00007fff49e14a07 CFRunLoopRunSpecific + 487
56 com.apple.HIToolbox 0x00007fff490f2d96 RunCurrentEventLoopInMode + 286
57 com.apple.HIToolbox 0x00007fff490f2b06 ReceiveNextEventCommon + 613
58 com.apple.HIToolbox 0x00007fff490f2884 _BlockUntilNextEventMatchingListInModeWithFilter + 64
59 com.apple.AppKit 0x00007fff473a5a73 _DPSNextEvent + 2085
60 com.apple.AppKit 0x00007fff47b3be34 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 3044
61 com.apple.AppKit 0x00007fff4739a885 -[NSApplication run] + 764
62 libqcocoa.dylib 0x000000011b8d853d 0x11b8b1000 + 161085
63 QtCore 0x000000011220e682 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 418
64 QtCore 0x00000001122130b2 QCoreApplication::exec() + 402
65 QtWidgets.so 0x000000011124fdc2 meth_QApplication_exec_(_object*, _object*) + 82
66 org.python.python 0x000000010e901a36 _PyCFunction_FastCallDict + 166
67 org.python.python 0x000000010e990050 call_function + 480
68 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
69 org.python.python 0x000000010e9912dd fast_function + 525
70 org.python.python 0x000000010e99002b call_function + 443
71 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
72 org.python.python 0x000000010e990bab _PyEval_EvalCodeWithName + 2715
73 org.python.python 0x000000010e991263 fast_function + 403
74 org.python.python 0x000000010e99002b call_function + 443
75 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
76 org.python.python 0x000000010e990bab _PyEval_EvalCodeWithName + 2715
77 org.python.python 0x000000010e987270 PyEval_EvalCode + 48
78 org.python.python 0x000000010e984a27 builtin_exec + 567
79 org.python.python 0x000000010e901a36 _PyCFunction_FastCallDict + 166
80 org.python.python 0x000000010e990050 call_function + 480
81 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
82 org.python.python 0x000000010e990bab _PyEval_EvalCodeWithName + 2715
83 org.python.python 0x000000010e991263 fast_function + 403
84 org.python.python 0x000000010e99002b call_function + 443
85 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
86 org.python.python 0x000000010e990bab _PyEval_EvalCodeWithName + 2715
87 org.python.python 0x000000010e9872b7 PyEval_EvalCodeEx + 55
88 org.python.python 0x000000010e8df63f function_call + 367
89 org.python.python 0x000000010e8b41c5 PyObject_Call + 101
90 org.python.python 0x000000010e9daab3 RunModule + 147
91 org.python.python 0x000000010e9da2aa Py_Main + 2442
92 edu.ucsf.cgl.ChimeraX 0x000000010e8a3e16 main + 278
93 libdyld.dylib 0x00007fff721c8015 start + 1

Thread 1:
0 libsystem_kernel.dylib 0x00007fff72319292 workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff724e020e _pthread_wqthread + 1552
2 libsystem_pthread.dylib 0x00007fff724dfbe9 start_wqthread + 13

Thread 2:
0 libsystem_kernel.dylib 0x00007fff72318a1e psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff724e1589 _pthread_cond_wait + 732
2 com.apple.GeForceMTLDriver 0x00007fff454a3cc2 0x7fff45343000 + 1445058
3 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 3:: OGL Profiler
0 libsystem_kernel.dylib 0x00007fff7230f20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7230e724 mach_msg + 60
2 com.apple.opengl 0x00007fff542f5063 glcDebugListener + 303
3 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff7230f20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7230e724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff49e16045 CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff49e15397 CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff49e14a07 CFRunLoopRunSpecific + 487
5 com.apple.AppKit 0x00007fff474e2fc4 _NSEventThread + 184
6 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7231a0a2 poll + 10
1 QtCore 0x0000000112265a80 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x00000001122670f9 QEventDispatcherUNIX::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 857
3 QtCore 0x000000011220e682 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 418
4 QtWebEngineCore 0x0000000112e8371a 0x112e62000 + 136986
5 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
6 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
7 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
8 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
9 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 6:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff72319bf2 kevent + 10
1 QtWebEngineCore 0x0000000113f8f6d9 0x112e62000 + 18011865
2 QtWebEngineCore 0x0000000113f8c9cd 0x112e62000 + 18000333
3 QtWebEngineCore 0x0000000113a80c4f 0x112e62000 + 12708943
4 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
5 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
6 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
7 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
8 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 7:: WorkerPool/80643
0 libsystem_kernel.dylib 0x00007fff72318a1e psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff724e15c2 _pthread_cond_wait + 789
2 QtWebEngineCore 0x0000000113aba56b 0x112e62000 + 12944747
3 QtWebEngineCore 0x0000000113ad8999 0x112e62000 + 13068697
4 QtWebEngineCore 0x0000000113ad8f07 0x112e62000 + 13070087
5 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
6 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 8:: WorkerPool/47619
0 libsystem_kernel.dylib 0x00007fff72318a1e psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff724e15c2 _pthread_cond_wait + 789
2 QtWebEngineCore 0x0000000113aba56b 0x112e62000 + 12944747
3 QtWebEngineCore 0x0000000113ad8999 0x112e62000 + 13068697
4 QtWebEngineCore 0x0000000113ad8f07 0x112e62000 + 13070087
5 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
6 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 9:: Chrome_DBThread
0 libsystem_kernel.dylib 0x00007fff7230f20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7230e724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff49e16045 CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff49e15397 CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff49e14a07 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x0000000113a81bbf 0x112e62000 + 12712895
6 QtWebEngineCore 0x0000000113a81554 0x112e62000 + 12711252
7 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
8 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
9 QtWebEngineCore 0x000000011314f418 0x112e62000 + 3068952
10 QtWebEngineCore 0x000000011314f7df 0x112e62000 + 3069919
11 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
12 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
13 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 10:: Chrome_FileThread
0 libsystem_kernel.dylib 0x00007fff72319bf2 kevent + 10
1 QtWebEngineCore 0x0000000113f8f6d9 0x112e62000 + 18011865
2 QtWebEngineCore 0x0000000113f8c9cd 0x112e62000 + 18000333
3 QtWebEngineCore 0x0000000113a80c4f 0x112e62000 + 12708943
4 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
5 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
6 QtWebEngineCore 0x000000011314f498 0x112e62000 + 3069080
7 QtWebEngineCore 0x000000011314f7ef 0x112e62000 + 3069935
8 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
9 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
10 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
11 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
12 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 11:: Chrome_FileUserBlockingThread
0 libsystem_kernel.dylib 0x00007fff7230f20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7230e724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff49e16045 CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff49e15397 CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff49e14a07 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x0000000113a81bbf 0x112e62000 + 12712895
6 QtWebEngineCore 0x0000000113a81554 0x112e62000 + 12711252
7 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
8 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
9 QtWebEngineCore 0x000000011314f518 0x112e62000 + 3069208
10 QtWebEngineCore 0x000000011314f7ff 0x112e62000 + 3069951
11 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
12 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
13 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 12:: Chrome_ProcessLauncherThread
0 libsystem_kernel.dylib 0x00007fff7230f20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7230e724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff49e16045 CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff49e15397 CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff49e14a07 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x0000000113a81bbf 0x112e62000 + 12712895
6 QtWebEngineCore 0x0000000113a81554 0x112e62000 + 12711252
7 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
8 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
9 QtWebEngineCore 0x000000011314f598 0x112e62000 + 3069336
10 QtWebEngineCore 0x000000011314f80c 0x112e62000 + 3069964
11 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
12 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
13 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 13:: Chrome_CacheThread
0 libsystem_kernel.dylib 0x00007fff7230f20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7230e724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff49e16045 CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff49e15397 CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff49e14a07 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x0000000113a81bbf 0x112e62000 + 12712895
6 QtWebEngineCore 0x0000000113a81554 0x112e62000 + 12711252
7 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
8 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
9 QtWebEngineCore 0x000000011314f618 0x112e62000 + 3069464
10 QtWebEngineCore 0x000000011314f819 0x112e62000 + 3069977
11 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
12 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
13 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 14:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff72319bf2 kevent + 10
1 QtWebEngineCore 0x0000000113f8f6d9 0x112e62000 + 18011865
2 QtWebEngineCore 0x0000000113f8c9cd 0x112e62000 + 18000333
3 QtWebEngineCore 0x0000000113a80c36 0x112e62000 + 12708918
4 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
5 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
6 QtWebEngineCore 0x000000011314f698 0x112e62000 + 3069592
7 QtWebEngineCore 0x000000011314f826 0x112e62000 + 3069990
8 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
9 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
10 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
11 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
12 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 15:: BrowserBlockingWorker1/52995
0 libsystem_kernel.dylib 0x00007fff72318a1e psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff724e1589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x0000000113ad0ecf 0x112e62000 + 13037263
3 QtWebEngineCore 0x0000000113ad0596 0x112e62000 + 13034902
4 QtWebEngineCore 0x0000000113ad443d 0x112e62000 + 13050941
5 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
6 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 16:: IndexedDB
0 libsystem_kernel.dylib 0x00007fff7230f20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7230e724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff49e16045 CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff49e15397 CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff49e14a07 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x0000000113a81bbf 0x112e62000 + 12712895
6 QtWebEngineCore 0x0000000113a81554 0x112e62000 + 12711252
7 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
8 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
9 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
10 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
11 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 17:: CompositorTileWorker1/73987
0 libsystem_kernel.dylib 0x00007fff72318a1e psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff724e1589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000011466ff78 0x112e62000 + 25223032
3 QtWebEngineCore 0x0000000113ad443d 0x112e62000 + 13050941
4 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
5 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
6 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
7 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 18:: AudioThread
0 libsystem_kernel.dylib 0x00007fff7230f20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7230e724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff49e16045 CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff49e15397 CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff49e14a07 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x0000000113a81bbf 0x112e62000 + 12712895
6 QtWebEngineCore 0x0000000113a81554 0x112e62000 + 12711252
7 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
8 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
9 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
10 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
11 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 19:: Chrome_InProcGpuThread Dispatch queue: com.apple.root.default-qos
0 ??? 0x00000001314806ac 0 + 5121771180
1 libGLImage.dylib 0x00007fff5379c92e glgProcessPixelsWithProcessor_block_invoke + 110
2 libdispatch.dylib 0x00007fff72199221 _dispatch_client_callout2 + 8
3 libdispatch.dylib 0x00007fff7219cd71 _dispatch_apply_serial + 111
4 libdispatch.dylib 0x00007fff7218ee08 _dispatch_client_callout + 8
5 libdispatch.dylib 0x00007fff721a5019 _dispatch_sync_function_invoke + 54
6 libdispatch.dylib 0x00007fff72199070 dispatch_apply_f + 947
7 libGLImage.dylib 0x00007fff5379ba01 glgProcessPixelsWithProcessor + 1457
8 com.apple.GeForceGLDriver 0x00007fff445fab76 0x7fff44349000 + 2825078
9 com.apple.GeForceGLDriver 0x00007fff445fb2a0 0x7fff44349000 + 2826912
10 com.apple.GeForceGLDriver 0x00007fff44603f12 0x7fff44349000 + 2862866
11 com.apple.GeForceGLDriver 0x00007fff44603c1c 0x7fff44349000 + 2862108
12 com.apple.GeForceGLDriver 0x00007fff4462ca2c 0x7fff44349000 + 3029548
13 com.apple.GeForceGLDriver 0x00007fff4462ed88 0x7fff44349000 + 3038600
14 com.apple.GeForceGLDriver 0x00007fff446759bb 0x7fff44349000 + 3328443
15 com.apple.GeForceGLDriver 0x00007fff44657101 gldModifyTexSubImage + 333
16 GLEngine 0x00007fff5431d7d0 glTexSubImage2D_Exec + 1567
17 libGL.dylib 0x00007fff5378b74f glTexSubImage2D + 59
18 QtWebEngineCore 0x000000011483fe69 0x112e62000 + 27123305
19 QtWebEngineCore 0x0000000114827b75 0x112e62000 + 27024245
20 QtWebEngineCore 0x000000011479c232 0x112e62000 + 26452530
21 QtWebEngineCore 0x0000000114800fbb 0x112e62000 + 26865595
22 QtWebEngineCore 0x0000000114800b99 0x112e62000 + 26864537
23 QtWebEngineCore 0x0000000114796910 0x112e62000 + 26429712
24 QtWebEngineCore 0x0000000114798446 0x112e62000 + 26436678
25 QtWebEngineCore 0x0000000114766cb3 0x112e62000 + 26234035
26 QtWebEngineCore 0x000000011478987a 0x112e62000 + 26376314
27 QtWebEngineCore 0x0000000114743bb5 0x112e62000 + 26090421
28 QtWebEngineCore 0x0000000114744879 0x112e62000 + 26093689
29 QtWebEngineCore 0x00000001148d6a9a 0x112e62000 + 27740826
30 QtWebEngineCore 0x00000001148d68e0 0x112e62000 + 27740384
31 QtWebEngineCore 0x00000001148d543b 0x112e62000 + 27735099
32 QtWebEngineCore 0x00000001145b32cf 0x112e62000 + 24449743
33 QtWebEngineCore 0x00000001148cee73 0x112e62000 + 27709043
34 QtWebEngineCore 0x00000001148cee05 0x112e62000 + 27708933
35 QtWebEngineCore 0x0000000113a56011 0x112e62000 + 12533777
36 QtWebEngineCore 0x0000000113a7e656 0x112e62000 + 12699222
37 QtWebEngineCore 0x0000000113a7e91c 0x112e62000 + 12699932
38 QtWebEngineCore 0x0000000113a7ecd3 0x112e62000 + 12700883
39 QtWebEngineCore 0x0000000113a816ed 0x112e62000 + 12711661
40 QtWebEngineCore 0x0000000113a725aa 0x112e62000 + 12649898
41 QtWebEngineCore 0x0000000113a81104 0x112e62000 + 12710148
42 com.apple.CoreFoundation 0x00007fff49e32d81 CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION + 17
43 com.apple.CoreFoundation 0x00007fff49eea65c CFRunLoopDoSource0 + 108
44 com.apple.CoreFoundation 0x00007fff49e15d30 CFRunLoopDoSources0 + 208
45 com.apple.CoreFoundation 0x00007fff49e151ad CFRunLoopRun + 1293
46 com.apple.CoreFoundation 0x00007fff49e14a07 CFRunLoopRunSpecific + 487
47 QtWebEngineCore 0x0000000113a81bbf 0x112e62000 + 12712895
48 QtWebEngineCore 0x0000000113a81554 0x112e62000 + 12711252
49 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
50 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
51 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
52 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
53 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
54 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
55 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 20:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff72319bf2 kevent + 10
1 QtWebEngineCore 0x0000000113f8f6d9 0x112e62000 + 18011865
2 QtWebEngineCore 0x0000000113f8c9cd 0x112e62000 + 18000333
3 QtWebEngineCore 0x0000000113a80c4f 0x112e62000 + 12708943
4 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
5 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
6 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
7 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
8 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 21:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7231a0a2 poll + 10
1 QtCore 0x0000000112265a80 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x00000001122670f9 QEventDispatcherUNIX::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 857
3 QtCore 0x000000011220e682 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 418
4 QtWebEngineCore 0x0000000112e8371a 0x112e62000 + 136986
5 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
6 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
7 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
8 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
9 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 22:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7231a0a2 poll + 10
1 QtCore 0x0000000112265a80 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x00000001122670f9 QEventDispatcherUNIX::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 857
3 QtCore 0x000000011220e682 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 418
4 QtWebEngineCore 0x0000000112e8371a 0x112e62000 + 136986
5 QtWebEngineCore 0x0000000113a7e3be 0x112e62000 + 12698558
6 QtWebEngineCore 0x0000000113aa27e1 0x112e62000 + 12847073
7 QtWebEngineCore 0x0000000113ad661b 0x112e62000 + 13059611
8 QtWebEngineCore 0x0000000113acf917 0x112e62000 + 13031703
9 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 23:
0 libsystem_kernel.dylib 0x00007fff72319292 workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff724e020e _pthread_wqthread + 1552
2 libsystem_pthread.dylib 0x00007fff724dfbe9 start_wqthread + 13

Thread 24:
0 libsystem_kernel.dylib 0x00007fff72319292 workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff724e020e _pthread_wqthread + 1552
2 libsystem_pthread.dylib 0x00007fff724dfbe9 start_wqthread + 13

Thread 25:
0 libsystem_kernel.dylib 0x00007fff72319292 workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff724e020e _pthread_wqthread + 1552
2 libsystem_pthread.dylib 0x00007fff724dfbe9 start_wqthread + 13

Thread 26:
0 libsystem_kernel.dylib 0x00007fff72319292 workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff724e020e _pthread_wqthread + 1552
2 libsystem_pthread.dylib 0x00007fff724dfbe9 start_wqthread + 13

Thread 27:
0 libsystem_kernel.dylib 0x00007fff72319292 workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff724e020e _pthread_wqthread + 1552
2 libsystem_pthread.dylib 0x00007fff724dfbe9 start_wqthread + 13

Thread 28:
0 libsystem_kernel.dylib 0x00007fff72319292 workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff724e020e _pthread_wqthread + 1552
2 libsystem_pthread.dylib 0x00007fff724dfbe9 start_wqthread + 13

Thread 29:
0 libsystem_kernel.dylib 0x00007fff72318a1e psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff724e1589 _pthread_cond_wait + 732
2 org.python.python 0x000000010e9d6c2e PyThread_acquire_lock_timed + 542
3 org.python.python 0x000000010e9dd76f acquire_timed + 111
4 org.python.python 0x000000010e9dd50c lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010e901b6b _PyCFunction_FastCallDict + 475
6 org.python.python 0x000000010e990050 call_function + 480
7 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
8 org.python.python 0x000000010e990bab _PyEval_EvalCodeWithName + 2715
9 org.python.python 0x000000010e991263 fast_function + 403
10 org.python.python 0x000000010e99002b call_function + 443
11 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
12 org.python.python 0x000000010e990bab _PyEval_EvalCodeWithName + 2715
13 org.python.python 0x000000010e991263 fast_function + 403
14 org.python.python 0x000000010e99002b call_function + 443
15 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
16 org.python.python 0x000000010e9912dd fast_function + 525
17 org.python.python 0x000000010e99002b call_function + 443
18 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
19 org.python.python 0x000000010e9912dd fast_function + 525
20 org.python.python 0x000000010e99002b call_function + 443
21 org.python.python 0x000000010e98cbbc _PyEval_EvalFrameDefault + 22716
22 org.python.python 0x000000010e9916d3 _PyFunction_FastCallDict + 835
23 org.python.python 0x000000010e8b43cf _PyObject_FastCallDict + 191
24 org.python.python 0x000000010e8b45ac _PyObject_Call_Prepend + 156
25 org.python.python 0x000000010e8b41c5 PyObject_Call + 101
26 org.python.python 0x000000010e9ddfe6 t_bootstrap + 70
27 libsystem_pthread.dylib 0x00007fff724e0661 _pthread_body + 340
28 libsystem_pthread.dylib 0x00007fff724e050d _pthread_start + 377
29 libsystem_pthread.dylib 0x00007fff724dfbf9 thread_start + 13

Thread 0 crashed with X86 Thread State (64-bit):

rax: 0x0000000000000000 rbx: 0x00007fffaa4ca380 rcx: 0x000000010ecb8a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x000000010ecb8a80 rsp: 0x000000010ecb8a48

r8: 0x000000010ecb8f48 r9: 0x00007fc3d4acc690 r10: 0x00007fffaa4ca3c8 r11: 0x0000000000000287

r12: 0x0000000000000307 r13: 0x00007fc3de2f9d90 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff72318b6e rfl: 0x0000000000000286 cr2: 0x0000000104b03000


Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133

Binary Images:

0x10e8a3000 - 0x10e8a3ff3 +edu.ucsf.cgl.ChimeraX (0.7.0 - 0.7.0.0) <A0931C61-70CE-30E0-BEB5-0E08FADDA609> /Users/USER/*/ChimeraX.app/Contents/MacOS/ChimeraX
0x10e8a6000 - 0x10ea79fff +org.python.python (3.6.4, [c] 2001-2017 Python Software Foundation. - 3.6.4) <05DCE1CB-DB9A-3216-932C-3DEC0D24E0E9> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/Python
0x10ee7f000 - 0x10ee80fff +_heapq.cpython-36m-darwin.so (0) <2070AE20-F76C-3D3E-8BFF-A4C3BBABEA0B> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_heapq.cpython-36m-darwin.so
0x10efcd000 - 0x10efd1ff7 +_struct.cpython-36m-darwin.so (0) <1CF756D9-3E4E-31C1-9144-CF577321A87C> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_struct.cpython-36m-darwin.so
0x10f0db000 - 0x10f0e7ff3 +_ssl.cpython-36m-darwin.so (0) <B98326A9-0A4E-3CC2-A5C7-41F96B1ECC79> /Users/USER/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_ssl.cpython-36m-darwin.so
0x10f0f7000 - 0x10f13cff7 +libssl.1.0.0.dylib (0) <405ACB09-E770-3C07-A223-D20BC9E7220F> /Users/USER/*/libssl.1.0.0.dylib
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0x7fff71e29000 - 0x7fff71e89ff3 libusrtcp.dylib (1229.51.2) <3D8806D9-4BA9-35EE-BC44-F58BC2A0962D> /usr/lib/libusrtcp.dylib
0x7fff71e8a000 - 0x7fff71e8dffb libutil.dylib (51.20.1) <216D18E5-0BAF-3EAF-A38E-F6AC37CBABD9> /usr/lib/libutil.dylib
0x7fff71e8e000 - 0x7fff71e9bfff libxar.1.dylib (400) <0316128D-3B47-3052-995D-97B4FE5491DC> /usr/lib/libxar.1.dylib
0x7fff71e9f000 - 0x7fff71f86fff libxml2.2.dylib (31.10) <503721DB-0D8D-379E-B743-18CE59304155> /usr/lib/libxml2.2.dylib
0x7fff71f87000 - 0x7fff71faffff libxslt.1.dylib (15.12) <4A5E011D-8B29-3135-A52B-9A9070ABD752> /usr/lib/libxslt.1.dylib
0x7fff71fb0000 - 0x7fff71fc2ffb libz.1.dylib (70) <48C67CFC-940D-3857-8DAD-857774605352> /usr/lib/libz.1.dylib
0x7fff7205e000 - 0x7fff72062ff7 libcache.dylib (80) <092479CB-1008-3A83-BECF-E115F24D13C1> /usr/lib/system/libcache.dylib
0x7fff72063000 - 0x7fff7206dff3 libcommonCrypto.dylib (60118.50.1) <029F5985-9B6E-3DCB-9B96-FD007678C6A7> /usr/lib/system/libcommonCrypto.dylib
0x7fff7206e000 - 0x7fff72075fff libcompiler_rt.dylib (62) <968B8E3F-3681-3230-9D78-BB8732024F6E> /usr/lib/system/libcompiler_rt.dylib
0x7fff72076000 - 0x7fff7207fffb libcopyfile.dylib (146.50.5) <3885083D-50D8-3EEC-B481-B2E605180D7F> /usr/lib/system/libcopyfile.dylib
0x7fff72080000 - 0x7fff72105fff libcorecrypto.dylib (562.50.17) <67007279-24E1-3F30-802D-A55CD5C27946> /usr/lib/system/libcorecrypto.dylib
0x7fff7218d000 - 0x7fff721c6ff7 libdispatch.dylib (913.50.12) <848EEE57-4235-3A61-9A52-C0097DD2AB5E> /usr/lib/system/libdispatch.dylib
0x7fff721c7000 - 0x7fff721e4ff7 libdyld.dylib (551.3) <CF59A5A5-288B-30E6-BD42-9056B4E4139A> /usr/lib/system/libdyld.dylib
0x7fff721e5000 - 0x7fff721e5ffb libkeymgr.dylib (28) <E34E283E-90FA-3C59-B48E-1277CDB9CDCE> /usr/lib/system/libkeymgr.dylib
0x7fff721e6000 - 0x7fff721f2ff3 libkxld.dylib (4570.51.2) <A209B8A2-F5C3-35B1-A70B-1938F25B0ABE> /usr/lib/system/libkxld.dylib
0x7fff721f3000 - 0x7fff721f3ff7 liblaunch.dylib (1205.50.76) <4D52BB64-C568-3A36-8935-2480427EE2A2> /usr/lib/system/liblaunch.dylib
0x7fff721f4000 - 0x7fff721f8ffb libmacho.dylib (906) <1902A611-081A-3452-B11E-EBD1B166E831> /usr/lib/system/libmacho.dylib
0x7fff721f9000 - 0x7fff721fbff3 libquarantine.dylib (86) <26C0BA22-8F93-3A07-9A4E-C8D53D2CE42E> /usr/lib/system/libquarantine.dylib
0x7fff721fc000 - 0x7fff721fdff3 libremovefile.dylib (45) <711E18B2-5BBE-3211-A916-56740C27D17A> /usr/lib/system/libremovefile.dylib
0x7fff721fe000 - 0x7fff72215fff libsystem_asl.dylib (356.50.1) <3B24F2D1-B578-359D-ADB2-0ED19A364C38> /usr/lib/system/libsystem_asl.dylib
0x7fff72216000 - 0x7fff72216fff libsystem_blocks.dylib (67) <17303FDF-0D2D-3963-B05E-B4DF63052D47> /usr/lib/system/libsystem_blocks.dylib
0x7fff72217000 - 0x7fff722a0ff7 libsystem_c.dylib (1244.50.9) <1187BFE8-4576-3247-8177-481554E1F9E7> /usr/lib/system/libsystem_c.dylib
0x7fff722a1000 - 0x7fff722a4ffb libsystem_configuration.dylib (963.50.8) <DF6B5287-203E-30CB-9947-78DF446C72B8> /usr/lib/system/libsystem_configuration.dylib
0x7fff722a5000 - 0x7fff722a8ffb libsystem_coreservices.dylib (51) <486000D3-D8CB-3BE7-8EE5-8BF380DE6DF7> /usr/lib/system/libsystem_coreservices.dylib
0x7fff722a9000 - 0x7fff722aafff libsystem_darwin.dylib (1244.50.9) <09C21A4A-9EE0-388B-A9D9-DFF8F6758791> /usr/lib/system/libsystem_darwin.dylib
0x7fff722ab000 - 0x7fff722b1ff7 libsystem_dnssd.dylib (878.50.17) <9033B909-BCF7-37EB-A040-ADE8081611D6> /usr/lib/system/libsystem_dnssd.dylib
0x7fff722b2000 - 0x7fff722fbff7 libsystem_info.dylib (517.30.1) <AB634A98-B8AA-3804-8436-38261FC8EC4D> /usr/lib/system/libsystem_info.dylib
0x7fff722fc000 - 0x7fff72322ff7 libsystem_kernel.dylib (4570.51.2) <7FF1E390-2FAC-33A7-A545-60D9BB6692D4> /usr/lib/system/libsystem_kernel.dylib
0x7fff72323000 - 0x7fff7236efcb libsystem_m.dylib (3147.50.1) <FC2E58BA-E6D5-3D2A-89CA-67F212294136> /usr/lib/system/libsystem_m.dylib
0x7fff7236f000 - 0x7fff7238efff libsystem_malloc.dylib (140.50.6) <7FD43735-9DDD-300E-8C4A-F909A74BDF49> /usr/lib/system/libsystem_malloc.dylib
0x7fff7238f000 - 0x7fff724bfff3 libsystem_network.dylib (1229.51.2) <F65ED095-8ABA-3355-93F8-B9D0505932F4> /usr/lib/system/libsystem_network.dylib
0x7fff724c0000 - 0x7fff724caffb libsystem_networkextension.dylib (767.50.25) <758F1414-796D-3422-83C9-92D2915A06CE> /usr/lib/system/libsystem_networkextension.dylib
0x7fff724cb000 - 0x7fff724d4ff3 libsystem_notify.dylib (172) <08012EC0-2CD2-34BE-BF93-E7F56491299A> /usr/lib/system/libsystem_notify.dylib
0x7fff724d5000 - 0x7fff724dcff7 libsystem_platform.dylib (161.50.1) <6355EE2D-5456-3CA8-A227-B96E8F1E2AF8> /usr/lib/system/libsystem_platform.dylib
0x7fff724dd000 - 0x7fff724e8fff libsystem_pthread.dylib (301.50.1) <0E51CCBA-91F2-34E1-BF2A-FEEFD3D321E4> /usr/lib/system/libsystem_pthread.dylib
0x7fff724e9000 - 0x7fff724ecfff libsystem_sandbox.dylib (765.50.51) <B48D256E-D7DB-3D4F-BC95-34557170C7AA> /usr/lib/system/libsystem_sandbox.dylib
0x7fff724ed000 - 0x7fff724eeff3 libsystem_secinit.dylib (30) <DE8D14E8-A276-3FF8-AE13-77F7040F33C1> /usr/lib/system/libsystem_secinit.dylib
0x7fff724ef000 - 0x7fff724f6ff7 libsystem_symptoms.dylib (820.50.37) <ED7350E0-B68B-374A-9AB7-DC1F195A8327> /usr/lib/system/libsystem_symptoms.dylib
0x7fff724f7000 - 0x7fff7250afff libsystem_trace.dylib (829.50.17) <6568D68B-1D4C-38EE-90A9-54821D6403C0> /usr/lib/system/libsystem_trace.dylib
0x7fff7250c000 - 0x7fff72511ff7 libunwind.dylib (35.3) <BEF3FB49-5604-3B5F-82B5-332B80023AC3> /usr/lib/system/libunwind.dylib
0x7fff72512000 - 0x7fff7253ffff libxpc.dylib (1205.50.76) <25DB244E-217D-3CE0-A8F2-0C4255783B42> /usr/lib/system/libxpc.dylib

External Modification Summary:

Calls made by other processes targeting this process:

task_for_pid: 2
thread_create: 0
thread_set_state: 0

Calls made by this process:

task_for_pid: 0
thread_create: 0
thread_set_state: 0

Calls made by all processes on this machine:

task_for_pid: 225075
thread_create: 0
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=541.1M resident=0K(0%) swapped_out_or_unallocated=541.1M(100%)
Writable regions: Total=535.3M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=535.3M(100%)

VIRTUAL REGION

REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 2
CG backing stores 6872K 8
CG image 32K 4
CoreAnimation 52K 8
CoreGraphics 8K 2
CoreImage 8K 3
CoreUI image data 1352K 16
CoreUI image file 180K 3
Dispatch continuations 16.0M 2
Foundation 28K 3
Kernel Alloc Once 8K 2
MALLOC 378.6M 168
MALLOC guard page 48K 11
MALLOC_LARGE (reserved) 1504K 9 reserved VM address space (unallocated)
Memory Tag 242 12K 2
OpenGL GLSL 512K 7
STACK GUARD 116K 30
Stack 27.5M 31
Stack Guard 55.7M 2
VM_ALLOCATE 101.7M 192
DATA 47.6M 405
FONT_DATA 4K 2
GLSLBUILTINS 2588K 2
LINKEDIT 207.1M 113
TEXT 334.1M 392
UNICODE 560K 2
mapped file 71.4M 29
shared memory 700K 14
=========== ======= =======
TOTAL 1.2G 1437
TOTAL, minus reserved VM space 1.2G 1437

Model: iMac13,2, BootROM IM131.0114.B00, 4 processors, Intel Core i7, 3.4 GHz, 32 GB, SMC 2.11f16
Graphics: NVIDIA GeForce GTX 680MX, NVIDIA GeForce GTX 680MX, PCIe
Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 0/DIMM1, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 1/DIMM1, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xF4), Broadcom BCM43xx 1.0 (7.21.190.18.1a3)
Bluetooth: Version 6.0.5f3, 3 services, 27 devices, 1 incoming serial ports
Network Service: Ethernet, Ethernet, en0
Serial ATA Device: APPLE HDD ST3000DM001, 3 TB
Serial ATA Device: APPLE SSD SM128E, 121.33 GB
USB Device: USB 2.0 Bus
USB Device: Hub
USB Device: FaceTime HD Camera (Built-in)
USB Device: USB 2.0 Bus
USB Device: Hub
USB Device: Hub
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
USB Device: USB 3.0 Bus
USB Device: BUP Fast HDD
USB Device: My Passport 25E2
USB Device: Advantage2 Keyboard
USB Device: SpaceNavigator
Thunderbolt Bus: iMac, Apple Inc., 23.4

comment:5 by Eric Pettersen, 7 years ago

Resolution: → fixed
Status: assigned → closed

"position changed" was being change-tracked on an unopened model (i.e. one that shouldn't be tracking changes)

Fix is in the next daily build.

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