Timeline



Jan 4, 2017:

5:14 PM Ticket #514 (Make mmCIF read aniso_u (temperature factors)) created by Tom Goddard
Would like the mmCIF file reader to read anisotropic temperature …
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Dec 29, 2016:

2:55 PM Ticket #513 (2dlabels "all" specifier stopped working) created by Elaine Meng
I'm 99.9% sure this used to work, as I verified before committing …

Dec 23, 2016:

3:22 PM Ticket #512 (4adx won't open) created by Greg Couch
Neither as either a PDB nor a mmCIF file. Interrupting the process …

Dec 22, 2016:

3:09 PM Ticket #511 (Report mmCIF assemblies in log when mmCIF opened) created by tef@…
Report the available mmCIF assemblies in the log when an mmCIF file is …
2:49 PM DeveloperMeetings edited by Conrad Huang
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2:49 PM 2016-12-22 created by Conrad Huang

Dec 20, 2016:

4:06 PM Ticket #510 (Mac graphics driver crash, virus capsid full lighting) created by Tom Goddard
open 2qa0 sym #1 as 1 hide ribbon show style sphere light full crash …
9:44 AM Ticket #502 (findclash misleading and wrong) closed by Conrad Huang
fixed: Fixed in 094e643. "other" is still not implemented, but …

Dec 19, 2016:

3:40 PM Ticket #509 (Status message slow rendering frame rate on Linux) created by tic20@…
Rendering a status message once per frame slows the frame rate from 55 …
1:55 PM 2016-12-19 edited by Scooter Morris
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1:39 PM 2016-12-19 created by Scooter Morris
12:25 PM DeveloperMeetings edited by Scooter Morris
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Dec 16, 2016:

6:23 PM Ticket #508 (Stereoscopic 360 camera broken if models moved) created by Tom Goddard
If any displayed models have transforms that are not the identity the …

Dec 15, 2016:

3:49 PM 2016-12-15 edited by Conrad Huang
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2:06 PM Ticket #507 (Make "help movie" show docs instead of list of subcommands) created by Tom Goddard
Want "help movie" to show the movie command manual page in the html …
1:52 PM DeveloperMeetings edited by Tom Ferrin
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1:52 PM 2016-12-15 created by Tom Ferrin
1:47 PM 2016-12-08 edited by Tom Ferrin
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Dec 14, 2016:

12:30 PM Ticket #506 (pip install overrides LD_LIBRARY_PATH) created by tic20@…
If I define a little bash script, chimera-python, wrapping ChimeraX's …

Dec 13, 2016:

3:19 PM Ticket #505 (Molecular surface (coloring?) breaks session restore) closed by Tom Goddard
fixed: Fixed. Session restore code was producing arrays of C++ pointers that …
11:17 AM Ticket #505 (Molecular surface (coloring?) breaks session restore) created by Elaine Meng
I had a session with a molecule, molecular surface, and a dx file …

Dec 12, 2016:

10:27 AM Ticket #504 (Changing the .selected attribute of Drawing objects doesn't propagate ...) created by tic20@…
TL;DR: changing the .selected attribute of Drawing objects doesn't …

Dec 9, 2016:

4:26 PM 2016-12-08 edited by Tom Ferrin
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1:07 PM Ticket #503 (Allow selection atoms through holes in mesh surface) created by tic20@…
Want ctrl-click to select atoms behind a mesh if click is not on a …
1:03 PM Ticket #501 (bysequence or byentity keywords) closed by Tom Goddard
fixed: Uncle. I replace color command bysequence with byentity and …

Dec 8, 2016:

3:52 PM 2016-12-08 edited by Tom Ferrin
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3:33 PM 2016-12-08 edited by Elaine Meng
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3:29 PM Ticket #502 (findclash misleading and wrong) created by Elaine Meng
ChimeraX findclash gives different results from Chimera findclash and …
2:54 PM DeveloperMeetings edited by Tom Ferrin
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2:53 PM 2016-12-08 created by Tom Ferrin
12:26 PM Ticket #501 (bysequence or byentity keywords) created by Elaine Meng
I find the "bysequence" and "sequence" keywords (in commands "color" …

Dec 7, 2016:

4:22 PM Ticket #498 (blank atomspecs cause errors) closed by Greg Couch
fixed: Reverted to grako 3.16.5.
2:27 PM FAI edited by pett
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12:46 PM FAI edited by pett
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11:44 AM Ticket #214 (Save image dialog bitrot) closed by Conrad Huang
wontfix: Since the switch to Qt, there has been no per-image-format options.
10:27 AM Ticket #411 (Copyright messes up Mac installer html) closed by Conrad Huang
fixed: Looks like it's fixed.
10:18 AM Ticket #486 (Blast Protein GUI won't run) closed by Conrad Huang
fixed: Fixed in 2724b10. Somehow a class name got mangled in one …
10:15 AM Ticket #150 (Ribbon slow creation) closed by Conrad Huang
fixed: Ribbon display for 5a5b now takes about 2-3 seconds. Still not ideal …

Dec 6, 2016:

4:28 PM Ticket #407 (Update status line during long computations) reopened by Tom Goddard
The fix of calling Qt prcoessEvents(ExcludeUserInputEvents) …
11:08 AM Ticket #500 (Allow selecting through holes in mesh surface) created by tic20@…
Begin forwarded message: From: Tristan Croll Subject: Suggestion: …

Dec 5, 2016:

5:59 PM Ticket #299 (Ability to add tool-specific keywords to open command) closed by Greg Couch
fixed: Done. Added to metadata.
2:36 PM Ticket #499 (Error at startup on Linux) closed by Greg Couch
fixed: Should be fixed.
2:21 PM Ticket #492 (Log help links broken) closed by pett
fixed
12:55 PM 2016-12-01 edited by Greg Couch
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12:54 PM 2016-12-01 edited by Greg Couch
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12:48 PM Ticket #499 (Error at startup on Linux) created by Tom Goddard
ChimeraX gives the following error on startup on Ubuntu 16.04 LTS. $ …
12:31 PM Ticket #498 (blank atomspecs cause errors) created by Elaine Meng
If the atomspec is blank, none of the special color names (byhet, …
12:04 PM Ticket #497 (Using tug atoms or ISOLDE on Mac cannot find OpenMM CPU platform) closed by Tom Goddard
fixed: Fixed tug atoms to set OPENMM_PLUGINS_DIR on Mac. Tristan, you will …
11:58 AM Ticket #497 (Using tug atoms or ISOLDE on Mac cannot find OpenMM CPU platform) created by tic20@…
OpenMM can only find the reference platform on Mac when using ISOLDE …
11:20 AM Ticket #496 (Toolshed does not indicate if tool was successfully installed) created by Tom Goddard
Pressing the Download button on the ISOLDE toolshed entry gives no …
11:17 AM Ticket #495 (Toolshed cannot install tool, write permission error) created by tic20@…
The Mac ChimeraX installs in /Applications as root and toolshed cannot …
7:46 AM Ticket #494 (Dropping one floating window into another and then tearing it away ...) created by tic20@…
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