Trac Ticket Queries

In addition to reports, Trac provides support for custom ticket queries, which can be used to display tickets that meet specified criteria.

To configure and execute a custom query, switch to the View Tickets module from the navigation bar, and select the Custom Query link.

Filters

When you first go to the query page, the default filter will display tickets relevant to you:

• If logged in then all open tickets, it will display open tickets assigned to you.
• If not logged in but you have specified a name or email address in the preferences, then it will display all open tickets where your email (or name if email not defined) is in the CC list.
• If not logged in and no name/email is defined in the preferences, then all open issues are displayed.

Current filters can be removed by clicking the button to the left with the minus sign on the label. New filters are added from the pulldown lists at the bottom corners of the filters box; 'And' conditions on the left, 'Or' conditions on the right. Filters with either a text box or a pulldown menu of options can be added multiple times to perform an Or on the criteria.

You can use the fields just below the filters box to group the results based on a field, or display the full description for each ticket.

After you have edited your filters, click the Update button to refresh your results.

Some shortcuts can be used to manipulate checkbox filters.

• Clicking on a filter row label toggles all checkboxes.
• Pressing the modifier key while clicking on a filter row label inverts the state of all checkboxes.
• Pressing the modifier key while clicking on a checkbox selects the checkbox and deselects all other checkboxes in the filter.

The modifier key is platform and browser dependent. On Mac the modified key is Option/Alt or Command. On Linux the modifier key is Ctrl + Alt. Opera on Windows seems to use Ctrl + Alt, while Alt is effective for other Windows browsers.

Navigating Tickets

Clicking on one of the query results will take you to that ticket. You can navigate through the results by clicking the Next Ticket or Previous Ticket links just below the main menu bar, or click the Back to Query link to return to the query page.

You can safely edit any of the tickets and continue to navigate through the results using the Next/Previous/Back to Query links after saving your results. When you return to the query any tickets which were edited will be displayed with italicized text. If one of the tickets was edited such that it no longer matches the query criteria , the text will also be greyed. Lastly, if a new ticket matching the query criteria has been created, it will be shown in bold.

The query results can be refreshed and cleared of these status indicators by clicking the Update button again.

Saving Queries

Trac allows you to save the query as a named query accessible from the reports module. To save a query ensure that you have Updated the view and then click the Save query button displayed beneath the results. You can also save references to queries in Wiki content, as described below.

Note: one way to easily build queries like the ones below, you can build and test the queries in the Custom report module and when ready - click Save query. This will build the query string for you. All you need to do is remove the extra line breaks.

Note: you must have the REPORT_CREATE permission in order to save queries to the list of default reports. The Save query button will only appear if you are logged in as a user that has been granted this permission. If your account does not have permission to create reports, you can still use the methods below to save a query.

Using TracLinks

You may want to save some queries so that you can come back to them later. You can do this by making a link to the query from any Wiki page.

[query:status=new|assigned|reopened&version=1.0 Active tickets against 1.0]

Which is displayed as:

Active tickets against 1.0

This uses a very simple query language to specify the criteria, see Query Language.

Alternatively, you can copy the query string of a query and paste that into the Wiki link, including the leading ? character:

[query:?status=new&status=assigned&status=reopened&group=owner Assigned tickets by owner]

Which is displayed as:

Assigned tickets by owner

Customizing the table format

You can also customize the columns displayed in the table format (format=table) by using col=<field>. You can specify multiple fields and what order they are displayed in by placing pipes (|) between the columns:

[[TicketQuery(max=3,status=closed,order=id,desc=1,format=table,col=resolution|summary|owner|reporter)]]

This is displayed as:

Results (1 - 3 of 13052)

1 2 3 4 5 6 7 8 9 10 11 →

Ticket	Resolution	Summary	Owner	Reporter
#19202	can't reproduce	Crash using open/save dialog	Eric Pettersen	chimerax-bug-report@…
#19200	can't reproduce	UnicodeDecodeError opening STL file	Tom Goddard	chimerax-bug-report@…
#19198	duplicate	ffmpeg: Permission denied	Zach Pearson	tplybrand@…

1 2 3 4 5 6 7 8 9 10 11 →

Full rows

In table format you can also have full rows by using rows=<field>:

[[TicketQuery(max=3,status=closed,order=id,desc=1,format=table,col=resolution|summary|owner|reporter,rows=description)]]

This is displayed as:

Results (1 - 3 of 13052)

1 2 3 4 5 6 7 8 9 10 11 →

Ticket	Resolution	Summary	Owner	Reporter
#19202	can't reproduce	Crash using open/save dialog	Eric Pettersen	chimerax-bug-report@…
Description	The following bug report has been submitted: Platform: Windows-10-10.0.26100 ChimeraX Version: 1.11.dev202510012017 (2025-10-01 20:17:39 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code Windows fatal exception: File code 0x"8001010e ", line 198Windows fatal exception: in code 0x_run_module_as_main8001010e Thread 0x000031d8 (most recent call first): File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py8001010e" , line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py"Windows fatal exception: code 0x8001010e , line 1229 in Windows fatal exception: code 0x File 8001010e" ", line 88 in _run_code File Windows fatal exception: "code 0x8001010e" , line 198 in _run_module_as_main Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e Thread 0xWindows fatal exception: 000031d8code 0x (most recent call first): 8001010e File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.pycode 0x"8001010e, line 324 in Windows fatal exception: show_open_file_dialogcode 0x 8001010e File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.pycode 0x"8001010e, line 276 in Windows fatal exception: code 0x 8001010e File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.pyWindows fatal exception: "code 0x, line 8001010e368 in event_loopWindows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py"Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e, line 1064 in Windows fatal exception: initcode 0x 8001010e File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.pyWindows fatal exception: "code 0x, line 8001010e1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in Windows fatal exception: code 0x 8001010e File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line Windows fatal exception: 368code 0x in 8001010eevent_loop File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py8001010e" Windows fatal exception: code 0x8001010e , line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.pyWindows fatal exception: "code 0x, line 8001010e1229 in Windows fatal exception: code 0x File 8001010e" "Windows fatal exception: , line code 0x888001010e in _run_code Windows fatal exception: File code 0x"8001010e ", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "Windows fatal exception: code 0x"8001010e, line 198 in _run_module_as_main Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e Thread 0xWindows fatal exception: 000031d8code 0x (most recent call first): 8001010e File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.pycode 0x"8001010e, line 324Windows fatal exception: in code 0xshow_open_file_dialog8001010e File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line code 0x2768001010e in Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py "Windows fatal exception: , line code 0x3688001010e in event_loopWindows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.pyWindows fatal exception: "code 0x8001010e Windows fatal exception: code 0x8001010e , line Windows fatal exception: 1064code 0x in 8001010einit Windows fatal exception: code 0x8001010e File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.pyWindows fatal exception: "code 0x, line 8001010e1229 in Windows fatal exception: code 0x File 8001010e" Windows fatal exception: "code 0x, line 8001010e88 in Windows fatal exception: _run_codecode 0x 8001010e File "Windows fatal exception: code 0x"8001010e, line 198Windows fatal exception: in code 0x_run_module_as_main8001010e Thread 0x000031d8 (most recent call first): File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.pycode 0x"8001010e, line 324 in show_open_file_dialogWindows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line Windows fatal exception: 276code 0x in 8001010e File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.pycode 0x"8001010e, line 368 in event_loopWindows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py"Windows fatal exception: , line code 0x1064 in init8001010e File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File Windows fatal exception: code 0x8001010e" ", line 88 in _run_codeWindows fatal exception: code 0x File 8001010e" ", line Windows fatal exception: 198code 0x in 8001010e_run_module_as_main Thread 0x000031d8 (most recent call first): File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\updateloop.py8001010e" , line 150 in Windows fatal exception: _redraw_timer_callback code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line code 0x324 in 8001010e show_open_file_dialog Windows fatal exception: File code 0x"8001010e C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e , line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000031d8 (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\ctypes\__init__.py", line 512 in cast File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\numpy\core\_internal.py", line 284 in data_as File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\atomic\molc.py", line 339 in pointer File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\selection.py", line 99 in trigger_fire_needed File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\atomic\structure.py", line 1994 in _update_graphics_if_needed File "", line 720 in __ior__ File "C:\Program Files\ChimeraX 1.11.dev202510012017\bin\Lib\site-packages\chimerax\core\triggerset.py", line 259 in _activate File Windows fatal exception: access violation ===== Log before crash start ===== UCSF ChimeraX version: 1.11.dev202510012017 (2025-10-01) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > ui tool show Boltz > boltz predict protein > MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM > forEachSmilesLigand > "POPS,CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](C(=O)O)N)OC(=O)CCCCCCC/C=C\CCCCCCCC" > affinity each Running Boltz prediction of protein with 188 residues, 1 ligands CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](C(=O)O)N)OC(=O)CCCCCCC/C=C\CCCCCCCC on gpu Using cached multiple sequence alignment C:\Users\jungs/Downloads/ChimeraX/BoltzMSA\KRAS4B_PIP2_msa Ligand CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](C(=O)O)N)OC(=O)CCCCCCC/C=C\CCCCCCCC predicted binding affinity 8.7 uM, predicted binding probability 0.59 Boltz prediction completed in 1197 seconds (start boltz 225 sec, sequence search 0 sec, load weights 118 sec, structure inference 247 sec, load affinity weights 145 sec, affinity inference 463 sec) Please cite Boltz-1 Democratizing Biomolecular Interaction Modeling. BioRxiv https://doi.org/10.1101/2024.11.19.624167 if you use these predictions. > open > C:\Users\jungs/Desktop/boltz_1\boltz_results_POPS\predictions\POPS\POPS_model_0.cif > logInfo false > save "C:/Users/jungs/boltz22/Data/human KRAS4B full sequence_POPS.cxs" ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.11.dev202510012017 (2025-10-01) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.0 NVIDIA 577.03 OpenGL renderer: NVIDIA GeForce MX570 A/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.11.9 Locale: en_US.cp1252 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: windows Manufacturer: HP Model: HP Pavilion Laptop 16-af0xxx OS: Microsoft Windows 11 Home (Build 26100) Memory: 33,816,174,592 MaxProcessMemory: 137,438,953,344 CPU: 14 Intel(R) Core(TM) Ultra 7 155U OSLanguage: en-US Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 asttokens: 3.0.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.9.1 build: 1.3.0 certifi: 2025.8.3 cftime: 1.6.4.post1 charset-normalizer: 3.4.3 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.0.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.17 ChimeraX-AtomicLibrary: 14.2 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.dev202510012017 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.1 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.17.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.2.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.11 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.4 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.2.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.10 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.2 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.48.3 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.5 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.3 comtypes: 1.4.11 contourpy: 1.3.3 coverage: 7.10.7 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.4 debugpy: 1.8.17 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.60.1 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2025.4.15 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.7 jedi: 0.19.2 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.5 matplotlib-inline: 0.1.7 msgpack: 1.1.1 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.13.1 numpy: 1.26.4 nvidia-nvjitlink-cu12: 12.9.86 OpenMM: 8.2.0 OpenMM-CUDA-12: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.4.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 psutil: 7.0.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.6 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.2.5 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 8.4.2 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 pytz: 2025.2 pywin32: 311 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 requests: 2.32.5 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.2 traitlets: 5.14.3 typing_extensions: 4.15.0 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.14 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14 WMI: 1.5.1
#19200	can't reproduce	UnicodeDecodeError opening STL file	Tom Goddard	chimerax-bug-report@…
Description	The following bug report has been submitted: Platform: macOS-15.6.1-arm64-arm-64bit ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC) Description Replace this text with list of actions that caused this problem to occur Log: UCSF ChimeraX version: 1.10.1 (2025-07-24) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/macbook/Desktop/ZIF-8.x3d Can only save, not open, .x3d files > open /Users/macbook/Desktop/ZIF-8.stl Traceback (most recent call last): File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/open_command/dialog.py", line 339, in _qt_safe run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + ("" File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/commands/run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/commands/cli.py", line 3221, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/open_command/cmd.py", line 132, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/commands/cli.py", line 3221, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/open_command/cmd.py", line 215, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/open_command/cmd.py", line 526, in collated_open return remember_data_format() ^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/open_command/cmd.py", line 497, in remember_data_format models, status = func(*func_args, **func_kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/stl/__init__.py", line 44, in open return stl.read_stl(session, path, file_name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/stl/stl.py", line 97, in read_stl va, na, ta = read_ascii_stl_geometry(path) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/stl/stl.py", line 166, in read_ascii_stl_geometry lines = f.readlines() ^^^^^^^^^^^^^ File "<frozen codecs>", line 322, in decode UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8f in position 85: invalid start byte UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8f in position 85: invalid start byte File "", line 322, in decode See log for complete Python traceback. > open /Users/macbook/Desktop/ZIF-8.his Unrecognized file suffix '.his' > open /Users/macbook/Desktop/ZIF-8.stl Traceback (most recent call last): File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/open_command/dialog.py", line 339, in _qt_safe run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + ("" File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/commands/run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/commands/cli.py", line 3221, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/open_command/cmd.py", line 132, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/commands/cli.py", line 3221, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/open_command/cmd.py", line 215, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/open_command/cmd.py", line 526, in collated_open return remember_data_format() ^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/open_command/cmd.py", line 497, in remember_data_format models, status = func(*func_args, **func_kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/stl/__init__.py", line 44, in open return stl.read_stl(session, path, file_name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/stl/stl.py", line 97, in read_stl va, na, ta = read_ascii_stl_geometry(path) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/stl/stl.py", line 166, in read_ascii_stl_geometry lines = f.readlines() ^^^^^^^^^^^^^ File "<frozen codecs>", line 322, in decode UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8f in position 85: invalid start byte UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8f in position 85: invalid start byte File "", line 322, in decode See log for complete Python traceback. OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M4 OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac16,1 Model Number: MW2U3TU/A Chip: Apple M4 Total Number of Cores: 10 (4 performance and 6 efficiency) Memory: 16 GB System Firmware Version: 11881.140.96 OS Loader Version: 11881.140.96 Software: System Software Overview: System Version: macOS 15.6.1 (24G90) Kernel Version: Darwin 24.6.0 Time since boot: 1 gün 8 saat 4 dakika Graphics/Displays: Apple M4: Chipset Model: Apple M4 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.6.1 build: 1.2.2.post1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.2 ChimeraX-AddCharge: 1.5.19 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.20.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.1.4 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.7 ChimeraX-AtomicLibrary: 14.1.19 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.5.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.6.2 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.10.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.19 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.3 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.1 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.45.2 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.2 coverage: 7.10.0 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.15 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.59.0 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.7 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.3.2 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.11.0 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.8 pluggy: 1.6.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.4.1 pytest-cov: 6.2.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pyzmq: 27.0.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.7 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tornado: 6.5.1 traitlets: 5.14.3 typing_extensions: 4.14.1 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14
#19198	duplicate	ffmpeg: Permission denied	Zach Pearson	tplybrand@…
Description	The following bug report has been submitted: Platform: macOS-13.7.8-x86_64-i386-64bit ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC) Description A simple mseries command with slider option generated this error report, apparently immediately before the MP4 file was about to be written to disk. Log: UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/terry/TF-work/GTFEx1/check-200ns.pdb Chain information for check-200ns.pdb #1 --- Chain | Description ? | No description available ? | No description available Computing secondary structure > open /Users/terry/TF-work/GTFEx1/check-500ns.pdb Chain information for check-500ns.pdb #2 --- Chain | Description ? | No description available ? | No description available Computing secondary structure > matchmaker #2:dc to #1:dc Using Nucleic matrix instead of BLOSUM-62 for matching Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | Nucleic SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker check-200ns.pdb, chain (blank) (#1) with check-500ns.pdb, chain (blank) (#2), sequence alignment score = 56 RMSD between 12 pruned atom pairs is 1.139 angstroms; (across all 14 pairs: 1.806) > open /Users/terry/TF-work/GTFEx1/check-800ns.pdb Chain information for check-800ns.pdb #3 --- Chain | Description ? | No description available ? | No description available Computing secondary structure > matchmaker #3:dc to #1:dc Using Nucleic matrix instead of BLOSUM-62 for matching Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | Nucleic SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker check-200ns.pdb, chain (blank) (#1) with check-800ns.pdb, chain (blank) (#3), sequence alignment score = 56 RMSD between 12 pruned atom pairs is 0.834 angstroms; (across all 14 pairs: 1.515) > open /Users/terry/TF-work/GTFEx1/check-1100ns.pdb Chain information for check-1100ns.pdb #4 --- Chain | Description ? | No description available ? | No description available Computing secondary structure > matchmaker #4:dc to #1:dc Using Nucleic matrix instead of BLOSUM-62 for matching Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | Nucleic SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker check-200ns.pdb, chain (blank) (#1) with check-1100ns.pdb, chain (blank) (#4), sequence alignment score = 56 RMSD between 13 pruned atom pairs is 1.008 angstroms; (across all 14 pairs: 1.271) > open /Users/terry/TF-work/GTFEx1/check-1400ns.pdb Chain information for check-1400ns.pdb #5 --- Chain | Description ? | No description available ? | No description available Computing secondary structure > matchmaker #5:dc to #1:dc Using Nucleic matrix instead of BLOSUM-62 for matching Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | Nucleic SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker check-200ns.pdb, chain (blank) (#1) with check-1400ns.pdb, chain (blank) (#5), sequence alignment score = 56 RMSD between 13 pruned atom pairs is 1.187 angstroms; (across all 14 pairs: 1.436) > open /Users/terry/TF-work/GTFEx1/check-1700ns.pdb Chain information for check-1700ns.pdb #6 --- Chain | Description ? | No description available ? | No description available Computing secondary structure > matchmaker #6:dc to #1:dc Using Nucleic matrix instead of BLOSUM-62 for matching Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | Nucleic SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker check-200ns.pdb, chain (blank) (#1) with check-1700ns.pdb, chain (blank) (#6), sequence alignment score = 56 RMSD between 11 pruned atom pairs is 0.990 angstroms; (across all 14 pairs: 1.946) > open /Users/terry/TF-work/GTFEx1/check-2000ns.pdb Chain information for check-2000ns.pdb #7 --- Chain | Description ? | No description available ? | No description available Computing secondary structure > matchmaker #7:dc to #1:dc Using Nucleic matrix instead of BLOSUM-62 for matching Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | Nucleic SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker check-200ns.pdb, chain (blank) (#1) with check-2000ns.pdb, chain (blank) (#7), sequence alignment score = 56 RMSD between 12 pruned atom pairs is 1.068 angstroms; (across all 14 pairs: 1.745) > open /Users/terry/TF-work/GTFEx1/check-2300ns.pdb Chain information for check-2300ns.pdb #8 --- Chain | Description ? | No description available ? | No description available Computing secondary structure > matchmaker #8:dc to #1:dc Using Nucleic matrix instead of BLOSUM-62 for matching Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | Nucleic SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker check-200ns.pdb, chain (blank) (#1) with check-2300ns.pdb, chain (blank) (#8), sequence alignment score = 56 RMSD between 11 pruned atom pairs is 0.753 angstroms; (across all 14 pairs: 1.990) > open /Users/terry/TF-work/GTFEx1/check-2600ns.pdb Chain information for check-2600ns.pdb #9 --- Chain | Description ? | No description available ? | No description available Computing secondary structure > matchmaker #9:dc to #1:dc Using Nucleic matrix instead of BLOSUM-62 for matching Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | Nucleic SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker check-200ns.pdb, chain (blank) (#1) with check-2600ns.pdb, chain (blank) (#9), sequence alignment score = 56 RMSD between 12 pruned atom pairs is 1.051 angstroms; (across all 14 pairs: 1.882) > open /Users/terry/TF-work/GTFEx1/check-2900ns.pdb Chain information for check-2900ns.pdb #10 --- Chain | Description ? | No description available ? | No description available Computing secondary structure > matchmaker #10:dc to #1:dc Using Nucleic matrix instead of BLOSUM-62 for matching Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | Nucleic SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker check-200ns.pdb, chain (blank) (#1) with check-2900ns.pdb, chain (blank) (#10), sequence alignment score = 56 RMSD between 10 pruned atom pairs is 0.820 angstroms; (across all 14 pairs: 2.274) > select :48 170 atoms, 160 bonds, 10 residues, 10 models selected > show sel atoms > style sel ball Changed 170 atom styles > select :100,117 630 atoms, 660 bonds, 20 residues, 10 models selected > nucleotides sel atoms > select :100 330 atoms, 350 bonds, 10 residues, 10 models selected > color sel lime > select :117 300 atoms, 310 bonds, 10 residues, 10 models selected > color sel yellow > select protein 11870 atoms, 11940 bonds, 700 residues, 10 models selected > hide sel atoms > select :48 170 atoms, 160 bonds, 10 residues, 10 models selected > style sel ball Changed 170 atom styles > show sel atoms > select HC 7210 atoms, 1020 residues, 10 models selected > hide sel atoms > select nucleic-acid 10060 atoms, 10840 bonds, 320 residues, 10 models selected > ui tool show "Color Actions" > color sel tan target c > select protein 11870 atoms, 11940 bonds, 700 residues, 10 models selected > color sel deep sky blue target c > color sel cyan target c > color sel deep sky blue target c > select ::name="K" 60 atoms, 60 residues, 10 models selected > delete atoms sel > delete bonds sel > select ::name="MG" 120 atoms, 120 residues, 10 models selected > delete atoms sel > delete bonds sel > select ::name="ZN" 40 atoms, 40 residues, 10 models selected > delete atoms sel > delete bonds sel > select :48 170 atoms, 160 bonds, 10 residues, 10 models selected > color sel byelement > select clear > help help:user > mseries slider #1-10 title MD > movie record > movie encode /Users/terry/Desktop/movie1.mp4 framerate 25.0 Traceback (most recent call last): File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/triggerset.py", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/widgets/slider.py", line 164, in next_value_cb self.stop() File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/widgets/slider.py", line 148, in stop self.record_cb() File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/widgets/slider.py", line 211, in record_cb run(ses, f'movie encode %s framerate %.1f' File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/commands/run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/commands/cli.py", line 3221, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/movie/moviecmd.py", line 202, in movie_encode encode_op(session, output[-1], format, quality, qscale, bitrate, File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/movie/moviecmd.py", line 260, in encode_op movie.start_encoding(output, f['ffmpeg_name'], output_size, f['ffmpeg_codec'], "yuv420p", f['size_restriction'], File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/movie/movie.py", line 324, in start_encoding self.encoder.run(Status_Reporter()) File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/movie/encode.py", line 232, in run p = Popen(self.arg_list, stdin=DEVNULL, stdout=PIPE, stderr=PIPE) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py", line 1026, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py", line 1950, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) PermissionError: [Errno 13] Permission denied: '/Applications/ChimeraX-1.10.app/Contents/bin/ffmpeg' Error processing trigger "new frame": PermissionError: [Errno 13] Permission denied: '/Applications/ChimeraX-1.10.app/Contents/bin/ffmpeg' File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py", line 1950, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) See log for complete Python traceback. OpenGL version: 4.1 ATI-4.14.4 OpenGL renderer: AMD Radeon Pro 555 OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac18,2 Processor Name: Quad-Core Intel Core i5 Processor Speed: 3 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Memory: 8 GB System Firmware Version: 529.140.2.0.0 OS Loader Version: 577.140.2~30 SMC Version (system): 2.40f1 Software: System Software Overview: System Version: macOS 13.7.8 (22H730) Kernel Version: Darwin 22.6.0 Time since boot: 1 day, 2 hours, 28 minutes Graphics/Displays: Radeon Pro 555: Chipset Model: Radeon Pro 555 Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 2 GB Vendor: AMD (0x1002) Device ID: 0x67ef Revision ID: 0x00c7 ROM Revision: 113-C980AA-921 VBIOS Version: 113-C9810A1P-017 EFI Driver Version: 01.00.921 Metal Support: Metal 2 Displays: iMac: Display Type: Built-In Retina LCD Resolution: 4096 x 2304 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.4.0 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.5.0 build: 1.2.2.post1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.2 ChimeraX-AddCharge: 1.5.19 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.20.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.1.4 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.7 ChimeraX-AtomicLibrary: 14.1.18 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.5.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.6.2 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.10.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.19 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.1 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.45.2 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.2 coverage: 7.9.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.14 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.58.4 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.7 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.4.4 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.11.0 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.8 pluggy: 1.6.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.32 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.4.1 pytest-cov: 6.2.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pyzmq: 27.0.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.7 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tornado: 6.5.1 traitlets: 5.14.3 typing_extensions: 4.14.0 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14

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Query Language

query: TracLinks and the [[TicketQuery]] macro both use a mini “query language” for specifying query filters. Filters are separated by ampersands (&). Each filter consists of the ticket field name, an operator and one or more values. More than one value are separated by a pipe (|), meaning that the filter matches any of the values. To include a literal & or | in a value, escape the character with a backslash (\).

The available operators are:

=	the field content exactly matches one of the values
~=	the field content contains one or more of the values
^=	the field content starts with one of the values
$=	the field content ends with one of the values

All of these operators can also be negated:

!=	the field content matches none of the values
!~=	the field content does not contain any of the values
!^=	the field content does not start with any of the values
!$=	the field content does not end with any of the values

The date fields created and modified can be constrained by using the = operator and specifying a value containing two dates separated by two dots (..). Either end of the date range can be left empty, meaning that the corresponding end of the range is open. The date parser understands a few natural date specifications like "3 weeks ago", "last month" and "now", as well as Bugzilla-style date specifications like "1d", "2w", "3m" or "4y" for 1 day, 2 weeks, 3 months and 4 years, respectively. Spaces in date specifications can be omitted to avoid having to quote the query string.

created=2007-01-01..2008-01-01	query tickets created in 2007
created=lastmonth..thismonth	query tickets created during the previous month
modified=1weekago..	query tickets that have been modified in the last week
modified=..30daysago	query tickets that have been inactive for the last 30 days

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See also: TracTickets, TracReports, TracGuide, TicketQuery