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Timeline
Jan 23, 2018:
- 5:32 PM 2018-01-18 edited by
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- 5:29 PM 2018-01-18 edited by
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- 5:05 PM 2018-01-18 edited by
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- 5:03 PM 2018-01-18 edited by
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- 3:47 PM 2018-01-18 edited by
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- 3:47 PM 2018-01-18 edited by
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- 2:02 PM Ticket #1014 (mmCIF not assigning ss_id correctly) created by
- If 2gbp is read from mmCIF (but not PDB), ss_id = 1 refers to the …
- 12:01 PM 2018-01-18 edited by
- (diff)
- 11:38 AM Ticket #1013 ("info models" gives traceback if attr name incorrect) created by
- I'm guessing this is because the attribute name I tried doesn't exist. …
- 11:15 AM Ticket #1012 (Methods for fast automatic object deletion) closed by
- not a bug: Yes, as you discovered, DestructionBatcher prevents individual …
- 1:52 AM Ticket #1012 (Methods for fast automatic object deletion) created by
- I have a working C++ dihedral implementation along with a manager that …
Jan 22, 2018:
- 6:07 PM Ticket #1010 (weird interaction between cartoon, transparent surface, and lighting) closed by
- fixed: Fixed. Transparency changes now cause shadow update.
- 3:00 PM Ticket #1011 (atomspec should not include bonds with only one end specified) created by
- It may be because my specification has a negation (~): sel C & ~ …
Jan 18, 2018:
- 3:39 PM Ticket #1008 (Reversing a Collection via slicing causes a segfault) closed by
- fixed: Fixed. The C++ code that gets attributes from arrays of pointers …
- 2:53 PM 2018-01-18 created by
- 2:06 PM DeveloperMeetings edited by
- (diff)
- 12:22 PM Ticket #1010 (weird interaction between cartoon, transparent surface, and lighting) created by
- Turning off cartoon inside a transparent surface causes some kind of …
- 12:12 PM Ticket #1009 (molecular surface not included in command-line specifiers of ...) created by
- For example, structure 1ncc is antibody H and L chains, and N chain …
- 11:26 AM 2018-01-11 edited by
- (diff)
- 10:05 AM Ticket #967 (RFE: ViewdockX select multiple compounds and change status en masse) closed by
- fixed: We discussed possibly adding Shift-click to more easily select a long …
- 4:41 AM Ticket #1008 (Reversing a Collection via slicing causes a segfault) created by
- With a single atomic model loaded: […] The below fixes it: […]
Jan 17, 2018:
- 6:12 PM Ticket #1007 (AtomicStructures not freed when closed) created by
- The attached program, slowleak.py, shows what objects stick around …
- 1:02 PM Ticket #1006 (messed-up selection of residues with helix tubes) closed by
- fixed: Fixed.
Jan 16, 2018:
- 5:17 PM 2018-01-11 edited by
- (diff)
- 4:44 PM Ticket #1006 (messed-up selection of residues with helix tubes) created by
- I could have sworn I used to be able to select individual residues in …
- 12:04 PM Ticket #1005 (Open File dialog gives lots of Debug output on Windows) created by
- Using Open / File... on Windows spews lots of debug output to the …
- 11:12 AM Ticket #1004 (VIewDockX Plot sometimes gives Uncaught Error) closed by
- fixed: I think this is fixed by [changeset 5de467abd]. When the window gets …
- 9:26 AM Ticket #1004 (VIewDockX Plot sometimes gives Uncaught Error) created by
- Probably when my overall window is rather small to start with, …
- 8:03 AM Ticket #803 (Multiprocessing "spawn" method does not work) closed by
- fixed
Jan 12, 2018:
- 1:05 PM Ticket #1003 (IHM "Invalid cross-device link") created by
- Opening nup84 IHM example on Linux with /tmp and ~/Downloads on …
Jan 11, 2018:
- 11:32 PM Ticket #1002 (color modify error on pseudobonds) closed by
- fixed: typo
- 4:14 PM ChangeLog edited by
- (diff)
- 4:12 PM ChangeLog edited by
- (diff)
- 3:48 PM Ticket #1001 (model_panel.tool._fill_tree() fails for complex model trees) closed by
- fixed: Thanks for the patch. I tested and it looks good. It's committed to …
- 3:02 PM 2018-01-11 edited by
- (diff)
- 1:34 PM Ticket #1002 (color modify error on pseudobonds) created by
- open 2mnr color mod hue 10 targ p Traceback (most recent call last): …
- 1:21 PM Ticket #1000 (Could not parse stylesheet of object 0x291a87f5ce0) closed by
- fixed: Fixed by using pathname2url around the file name. Doesn't actually …
- 12:15 PM 2018-01-11 edited by
- (diff)
- 10:17 AM 2018-01-11 created by
- 10:06 AM DeveloperMeetings edited by
- (diff)
- 10:04 AM DeveloperMeetings2017 created by
- 6:28 AM Ticket #1001 (model_panel.tool._fill_tree() fails for complex model trees) created by
- To replicate: […] This will fire a long string of tracebacks like …
Jan 10, 2018:
- 6:08 PM Ticket #1000 (Could not parse stylesheet of object 0x291a87f5ce0) created by
- I believe model panel changing the color in its color buttons is …
- 5:57 PM Ticket #999 (SignalViewer playback error) closed by
- fixed: Fixed. Was trying to use last slider value that started off as None.
- 4:05 PM Ticket #789 (Optimize atom radius lookup) closed by
- fixed: Atomic radii caching implemented. The ability to revert to default …
- 4:05 PM Ticket #999 (SignalViewer playback error) created by
- Pressing Play button next to signal viewer slider after loading .npz …
- 4:00 PM Ticket #998 (Toolshed tool install gives long traceback when no permission to ...) created by
- Tried installing SignalViewer from Toolshed for All Users and it gives …
- 2:29 PM Ticket #997 (color modify blackness/whiteness 100 doesn't give black/white) closed by
- not a bug: just a misunderstanding of the HWB colorspace, of which these are the …
- 2:15 PM Ticket #997 (color modify blackness/whiteness 100 doesn't give black/white) created by
- would expect "color mod black 100" to give black and "color mod white …
Jan 9, 2018:
- 4:10 PM Ticket #980 (cannot change surface color/transparency after color zone) closed by
- fixed: Partly fixed. The transparency command can now change the per-vertex …
- 1:03 AM Ticket #996 (Issue reading PDB files) created by
- […]
Jan 8, 2018:
- 11:34 PM Ticket #984 (Depth cueing fails if an empty Model is added before first AtomicStructure) closed by
- fixed: Fixed. Lighting was not being updated the first time the scene was …
- 11:24 PM Ticket #995 (Mouse modes roll over shows no icons) created by
- The mouse model toolbar roll-over of two down arrows at the bottom of …
- 11:02 PM Ticket #994 (Report mouse position in image data) created by
- Sophie Dumont lab interested in having mouse over image report pixel …
- 10:59 PM Ticket #993 (Port measure blobs tool) created by
- Sophie Dumont lab is interested in using measure blobs tool in ChimeraX.
- 10:57 PM Ticket #992 (Scale bar tool) created by
- Would like a scale bar tool. Would prefer this is 2d overlay graphics …
- 10:54 PM Ticket #991 (Command to set exact zoom factor for image data) created by
- Would like a command to set the zoom level so that light microscopy …
- 10:47 PM Ticket #990 (Preference setting for orthographic camera mode) created by
- Sophie Dumont at UCSF was interested in having a ChimeraX to use …
- 10:45 PM Ticket #989 (Preference for linear volumetric brightness) created by
- Sophie Dumont at UCSF Parnassus wants a preference setting so that …
- 10:43 PM Ticket #988 (Fix volume linear interpolation) created by
- Torsten Wittmann at UCSF Parnassus wanted light microscopy display to …
- 5:11 PM Ticket #974 (problems with "reveal" option of hbonds, contacts, clashes) closed by
- fixed: In both hbonds and clashes/contacts, backbone wasn't handled right …
- 2:32 PM Ticket #987 (change/add pseudobond selection cascade) created by
- Now that pseudobonds can be selected separately from their endpoint …
- 1:24 PM Ticket #986 (impressions of chimeraX) created by
- […] firsttry.mol2
- 1:13 PM Ticket #976 (viewdockx unhappy after closing previous viewdockx table) closed by
- fixed: Fixed in 75e1ca1d9. The "delete" method for the viewdockx …
- 9:41 AM Ticket #985 (persistent nucleotide slabs after deleting chain) created by
- open 5cd4 hide protein nuc slab del /x ... I still see slabs for …
- 6:54 AM Ticket #984 (Depth cueing fails if an empty Model is added before first AtomicStructure) created by
- If I do: […] ... then load an atomic structure, ChimeraX fails to …
- 1:28 AM Ticket #983 (ffmpeg on OSX 10.11: dyld: Symbol not found: _clock_gettime) created by
- […] [[Image(...)]] …
Jan 7, 2018:
- 11:41 PM Ticket #982 (Remember microscopy file sets in file history) created by
- Currently file history can only remember a single file or path with a …
- 10:29 PM Ticket #971 (nucleotides error showing slabs for 5cd4) closed by
- fixed: This was fixed last Thursday.
Jan 5, 2018:
- 5:59 PM Ticket #979 (traceback using transparency command on map surf colored by zone) closed by
- fixed: Fixed. Code was broken a few weeks ago by changes to improve volume …
- 3:05 PM Ticket #981 (Command to select atoms of pseudobonds) created by
- Want a command like "select atoms pbonds" that selects the atom …
- 2:57 PM Ticket #977 (can't load PDB's larger than a certain size?) closed by
- wontfix: Hi Chuck, Well I tried your files on a 2012 MacBook Pro running a …
- 9:05 AM Ticket #980 (cannot change surface color/transparency after color zone) created by
- example: open 4hhb rainbow molmap /a 8 color #2 zone #1 dist 5 Then …
- 9:01 AM Ticket #979 (traceback using transparency command on map surf colored by zone) created by
- example: open 4hhb rainbow molmap /a 8 color #2 zone #1 dist 5 transp …
- 12:02 AM Ticket #978 (Use mmCIF res->seq correspondence info) created by
- Doesn't matter if it is mmCIF or PDB format. Traceback: […]
Jan 4, 2018:
- 3:32 PM Ticket #977 (can't load PDB's larger than a certain size?) created by
- […] adp_stateA_actin_chimera.pdb AM.pdb
- 2:27 PM Ticket #976 (viewdockx unhappy after closing previous viewdockx table) created by
- Maybe this is obscure... prioritize as desired: start ChimeraX, open …
- 2:14 PM Ticket #975 (Add "select" option to hbonds command) created by
- Add "select" option analogous to that in clashes/contacts (less …
- 2:00 PM Ticket #974 (problems with "reveal" option of hbonds, contacts, clashes) created by
- In "hbonds", this option should show the whole residue with an …
- 2:43 AM Ticket #961 (Toolshed not opening from ChimeraX in Linux (CentOS 7)) closed by
- nonchimerax: This was happening both in CentOS 7 and Fedora 24, but the problem is …
Jan 3, 2018:
- 2:07 PM Ticket #973 (Toolbar icons should not show keyboard shortcut status messages) closed by
- fixed: Fixed.
- 12:34 PM Ticket #973 (Toolbar icons should not show keyboard shortcut status messages) created by
- Make clicking a toolbar icon not report the equivalent keyboard …
- 12:16 PM Ticket #972 (open() opens text as ascii rather than unicode when Mac build is run ...) closed by
- nonchimerax: Take a look at the Python 3 open() documentation. …
- 9:22 AM Ticket #972 (open() opens text as ascii rather than unicode when Mac build is run ...) created by
- With a fresh installation of today's ChimeraX 0.5 on the Mac: If I …
Jan 2, 2018:
- 1:24 PM Ticket #971 (nucleotides error showing slabs for 5cd4) created by
- open 5cd4 hide protein nuc slab (nuc ladder works if you haven't …
- 5:05 AM Ticket #970 (GUI occasionally fails to respond to window resize) created by
- Probably another Linux-specific PyQt bug? On my Linux machine, …
Dec 28, 2017:
- 9:24 AM Ticket #969 (Color subcommands for zone, map, etc.) created by
- Tom G: Maybe the color command would be easier to grasp if zone and …
Dec 27, 2017:
- 2:37 PM Ticket #968 (nucleotides not saved in sessions) created by
- UCSF ChimeraX version: 0.5 (2017-12-26) Maybe this is known, but if I …
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