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Timeline
Jul 26, 2017:
- 5:43 PM Ticket #767 (image save from this session gives quadrant missing silhouette edges) created by
- On my Mac laptop with Intel graphics, OpenGL version: 4.1 …
Jul 25, 2017:
- 4:27 PM Ticket #766 (2dlabels ignores newline \n) created by
- Example: 2d create lab color orange text 'phosphorylated \n …
Jul 24, 2017:
- 6:42 PM Ticket #598 (Use QPainter to draw label text instead of PIL so Qt can handle fonts) closed by
- fixed: Done. Both 2d and 3d labels now use Qt instead of Pillow to draw …
- 4:11 PM Ticket #751 (contacts command fails) closed by
- fixed: Updated to networkx 2.0 (prerelease) from current git source code. …
- 1:23 PM Ticket #765 ("usage blast" gives traceback (delayed registration failed)) closed by
- fixed: Fixed in 2837440. Wrong ChimeraX classifiers were added …
- 12:16 PM Ticket #765 ("usage blast" gives traceback (delayed registration failed)) created by
- usage blast Traceback (most recent call last): File …
- 10:36 AM Ticket #764 (Error closing pseudobond group) closed by
- fixed: Moved pbg removal from open models list from pbg.delete() to …
- 10:26 AM Ticket #763 (undisplayed labels make everything really slow (and closing gives ...) closed by
- fixed: Decided to let Eric fix the pseudobond group delete problem, made new …
- 10:24 AM Ticket #764 (Error closing pseudobond group) created by
- open 2gbp close gives error below. Apparently trying to remove a …
- 9:35 AM Ticket #763 (undisplayed labels make everything really slow (and closing gives ...) created by
- I don't know if the traceback is from the undisplayed labels, but I'm …
Jul 21, 2017:
- 7:21 PM Ticket #762 (Histogram mouse over does not work on Mac retina display) closed by
- fixed: I put in a hack to fix this by multiplying mouse positions by 2 on …
- 7:18 PM Ticket #762 (Histogram mouse over does not work on Mac retina display) created by
- Mousing over a histogram of pseudobond lengths does not highlight the …
Jul 20, 2017:
- 4:37 PM Ticket #761 (Need user interface to be able to choose which tools autostart) closed by
- fixed
- 4:37 PM Ticket #761 (Need user interface to be able to choose which tools autostart) created by
- per summary
- 3:11 PM Ticket #759 (matchmaker broken (couldn't find alignment module)) closed by
- fixed: Seems to be working now... tested in 2017-07-19 build,
- 9:31 AM Ticket #760 (ChimeraX/Isolde error: can't import clipper) created by
- […]
Jul 19, 2017:
- 2:42 PM Ticket #588 (unstable tube orientation in morph) closed by
- fixed: Fixed in 5f5b11940. The unstable helix is six residues …
Jul 18, 2017:
- 5:11 PM Ticket #757 (Save multimodel PDB error) closed by
- fixed: Same problem as #758
- 5:09 PM Ticket #758 (save pdb crashes) closed by
- fixed: PDB saving was basically redeclaring the "models" keyword as a …
- 2:52 PM Ticket #759 (matchmaker broken (couldn't find alignment module)) created by
- I don't think it matters what data, but here's an example: open 2mnr …
- 1:48 PM WikiStart edited by
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- 1:41 PM Ticket #754 (file-history thumbnails don't account for saving selected-only or ...) closed by
- wontfix: To create a correct file history icon when saving a part of a model …
- 1:24 PM Ticket #758 (save pdb crashes) created by
- open 1r7z save test.pdb model #1.1 crashes Fatal Python error: …
- 1:19 PM Ticket #756 (file-history logic doesn't account for multi-save with model name/ID ...) closed by
- fixed: Made it so nothing is added to file history in cases where the save …
- 12:56 PM Ticket #757 (Save multimodel PDB error) created by
- open 1r7z save test[ID].pdb model #1 Traceback (most recent call …
- 9:56 AM Ticket #756 (file-history logic doesn't account for multi-save with model name/ID ...) created by
- Example with NMR ensemble: open 1g1p save ~/Desktop/junk[ID].pdb ... …
Jul 17, 2017:
- 5:44 PM 2017-07-06 edited by
- (diff)
- 1:33 PM Ticket #755 (Fetch mmcif files from rcsb instead of erratic www.pdb.org) closed by
- fixed: Changed fetching of mmCIF and PDB files to use files.rcsb.org instead …
- 1:04 PM Ticket #755 (Fetch mmcif files from rcsb instead of erratic www.pdb.org) created by
- ChimeraX fetches mmCIF files from www.pdb.org. That site is currently …
- 11:00 AM Ticket #754 (file-history thumbnails don't account for saving selected-only or ...) created by
- The logic for saving an image in file history doesn’t account for …
Jul 16, 2017:
Jul 15, 2017:
Jul 14, 2017:
- 12:56 PM BundleReformatting edited by
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- 10:36 AM Ticket #726 (opening CFTR structure and multiple sequence alignment in either order ...) closed by
- fixed: Okay, fixed, but it brings up another issue. The resulting …
Jul 13, 2017:
- 10:34 PM BundleReformatting edited by
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- 5:39 PM Ticket #731 (Side View starts too small (can only see checkboxes)) closed by
- fixed: Fixed in [develop 8239d1612].
- 4:34 PM Ticket #753 (Support saving trajectories into multiple PDB files) created by
- Is there a way to save a trajectory to multiple files? I could save …
- 4:27 PM Ticket #636 (Side View does not renormalize) closed by
- fixed: Should be fixed by [develop 1b2e98ec3].
Jul 12, 2017:
- 10:29 PM BundleReformatting edited by
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- 2:31 PM Ticket #601 (Add ability to write PDB) closed by
- fixed: The call-back-into-Python stuff isn't working, but that isn't essential.
- 1:15 PM BundleReformatting edited by
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Jul 7, 2017:
- 9:15 PM BundleReformatting edited by
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- 5:49 PM BundleReformatting edited by
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- 5:11 PM BundleReformatting edited by
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- 3:55 PM WikiStart edited by
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Jul 6, 2017:
- 1:53 PM 2017-07-06 created by
- 1:41 PM DeveloperMeetings edited by
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- 1:40 PM BundleReformatting edited by
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Jul 5, 2017:
- 4:44 PM WikiStart edited by
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- 12:16 PM BundleReformatting edited by
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- 3:36 AM Ticket #752 (CIF/PDB I/O problems) created by
- I'm looking at a fairly large structure (4ljz) which has zinc ions in …
Jul 3, 2017:
- 5:53 PM Ticket #699 (core.commands.rename issues) closed by
- fixed: Fixed the model-panel issues of this ticket.
- 3:02 PM Ticket #751 (contacts command fails) created by
- 'contacts #1' fails when running 'debug test'. Easily reproducible …
Jun 30, 2017:
- 5:20 PM BundleReformatting edited by
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- 4:45 PM BundleReformatting edited by
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- 1:19 PM Ticket #749 (Session ids for different pseudobonds are identical) closed by
- fixed: Needed to set up the pseudobond session IDs earlier in the save …
Jun 29, 2017:
- 12:23 PM Ticket #750 (could not save dcd, at least for PDB entries opened with "coord true") closed by
- fixed: Fixed. I made specifying models in the save dcd command optional -- …
- 11:20 AM Ticket #750 (could not save dcd, at least for PDB entries opened with "coord true") created by
- I tried both NMR ensembles 1g1p and 1plx. Example open 1g1p coord t …
Jun 28, 2017:
- 6:55 PM Ticket #749 (Session ids for different pseudobonds are identical) created by
- When I try to save a session with 3d labels on pseudobonds the label …
- 1:35 PM Ticket #634 ("windowsize" as first command after starting ChimeraX does not work) closed by
- fixed: Need to force Rapid Access off for accurate window size
- 1:22 PM Ticket #748 (trying to color single selected pseudobond colors the whole pseudobond ...) closed by
- fixed: Fixed. Problem was that the selection includes the pseudobond group …
- 12:16 PM Ticket #747 (Model panel close of submodel closes everything) closed by
- fixed
- 12:12 PM Ticket #748 (trying to color single selected pseudobond colors the whole pseudobond ...) created by
- Example: open 2gbp view ions zoom .8 (Ctrl-click to select one of the …
- 11:43 AM Ticket #747 (Model panel close of submodel closes everything) created by
- open 5igy Click model #1.1 hydrogen bonds in Model Panel and press …
- 8:10 AM Ticket #746 (Global pseudobonds not hidden if model hidden) closed by
- fixed: Fixed
Jun 27, 2017:
- 5:23 PM Ticket #742 (hbonds selrestrict "both" or atomspec gives traceback) closed by
- fixed: Testing a Collection for equality against a string wasn't returning …
- 5:16 PM Ticket #743 (hbonds intramol f gives traceback) closed by
- fixed: Fixed typo
- 5:10 PM Ticket #744 (hbonds retain true makes retained H-bonds into tater tots) closed by
- fixed: Radius setting was badly messed up.
- 2:53 PM Ticket #745 ("hbonds" doesn't like ensembles, I guess) closed by
- fixed
- 2:51 PM Ticket #746 (Global pseudobonds not hidden if model hidden) created by
- Whereas pseudobonds in per-structure groups (e.g. metal-coordination …
- 2:22 PM Ticket #745 ("hbonds" doesn't like ensembles, I guess) created by
- I tried 2 different ensembles, seemingly unrelated: 1g1p and 2nbk …
- 1:39 PM Ticket #614 (Add support for zones and attributes in atom spec) closed by
- fixed: First implemention has been committed bb266f8. Probably …
- 11:54 AM Ticket #744 (hbonds retain true makes retained H-bonds into tater tots) created by
- If I use "hb retain t" the pre-existing H-bonds become really fat and …
- 11:41 AM Ticket #743 (hbonds intramol f gives traceback) created by
- Example: open 1zik hb intramol f hbonds intraMol false Traceback …
- 11:36 AM Ticket #742 (hbonds selrestrict "both" or atomspec gives traceback) created by
- However, selrestrict "cross" or "any" seem to be working fine. …
Jun 26, 2017:
- 3:47 PM Ticket #533 (Hydrogen bond finder) closed by
- fixed: For the purposes of this ticket, this is completed. For final …
- 3:15 PM Ticket #726 (opening CFTR structure and multiple sequence alignment in either order ...) reopened by
- The problem is that a temporary StructureSeq in the C++ layer gets …
- 10:14 AM Ticket #741 (style command "dashes" but not "pseudobondRadius" works with pb model spec) closed by
- fixed: Fixed. Just forgot to make this work when I added support for …
- 9:54 AM Ticket #741 (style command "dashes" but not "pseudobondRadius" works with pb model spec) created by
- The style command "dashes" option works with pb model specified …
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